Wall clock time and date at job start Thu Apr 9 2020 13:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47165 * 2 1 4 4 C 1.46493 * 120.00047 * 270.00113 * 3 2 1 5 5 C 1.50705 * 109.47050 * 269.99763 * 4 3 2 6 6 H 1.08001 * 119.99379 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31507 * 119.99882 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47026 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46949 * 120.00138 * 9 7 5 12 12 H 1.48498 * 109.46958 * 239.99821 * 9 7 5 13 13 C 1.34781 * 119.99843 * 89.99620 * 3 2 1 14 14 O 1.21284 * 119.99817 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99795 * 359.97438 * 13 3 2 16 16 C 1.50706 * 109.46894 * 179.97438 * 15 13 3 17 17 C 1.38289 * 119.94594 * 265.00260 * 16 15 13 18 18 C 1.38116 * 120.05752 * 180.02562 * 17 16 15 19 19 C 1.38755 * 119.94255 * 359.97438 * 18 17 16 20 20 O 1.35905 * 120.05367 * 179.97438 * 19 18 17 21 21 C 1.38709 * 119.89228 * 0.27369 * 19 18 17 22 22 C 1.38171 * 119.93737 * 359.49050 * 21 19 18 23 23 C 1.50701 * 119.96764 * 180.23073 * 22 21 19 24 24 H 1.09008 * 109.47266 * 60.00317 * 1 2 3 25 25 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47638 * 300.00502 * 1 2 3 27 27 H 1.08992 * 109.47337 * 240.00217 * 2 1 3 28 28 H 1.09003 * 109.46858 * 119.99510 * 2 1 3 29 29 H 1.08997 * 109.47539 * 29.99577 * 4 3 2 30 30 H 1.08998 * 109.47414 * 149.99890 * 4 3 2 31 31 H 0.96999 * 119.99628 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47424 * 60.00412 * 15 13 3 33 33 H 1.08992 * 109.47489 * 300.00008 * 15 13 3 34 34 H 1.08005 * 119.96801 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.03129 * 179.97438 * 18 17 16 36 36 H 0.96705 * 113.99576 * 90.00130 * 20 19 18 37 37 H 1.07996 * 120.03256 * 179.72793 * 21 19 18 38 38 H 1.09003 * 109.47398 * 270.25770 * 23 22 21 39 39 H 1.09001 * 109.47368 * 30.25927 * 23 22 21 40 40 H 1.09000 * 109.47060 * 150.25759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0960 7 6 4.1495 2.3905 -2.8773 8 7 3.3495 3.1265 -3.6174 9 14 5.9140 2.0975 -3.4161 10 1 6.6011 1.2413 -2.4162 11 1 5.9220 1.4190 -4.7371 12 1 6.6212 3.3989 -3.5238 13 6 2.2429 2.0166 1.1673 14 8 2.6467 3.1602 1.1673 15 6 1.9911 1.3063 2.4723 16 6 2.3181 2.2294 3.6178 17 6 3.5666 2.1787 4.2104 18 6 3.8686 3.0232 5.2607 19 6 2.9183 3.9235 5.7209 20 8 3.2130 4.7551 6.7546 21 6 1.6651 3.9689 5.1282 22 6 1.3696 3.1253 4.0746 23 6 0.0099 3.1777 3.4268 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5818 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.6758 3.5176 -4.4429 32 1 2.6209 0.4187 2.5304 33 1 0.9430 1.0126 2.5298 34 1 4.3061 1.4780 3.8516 35 1 4.8437 2.9829 5.7235 36 1 3.5948 5.6009 6.4823 37 1 0.9222 4.6657 5.4874 38 1 -0.6620 2.4866 3.9358 39 1 -0.3878 4.1900 3.4982 40 1 0.0961 2.8943 2.3778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345666690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:45 Heat of formation + Delta-G solvation = -65.051095 kcal Electronic energy + Delta-G solvation = -21606.877055 eV Core-core repulsion = 18386.437886 eV Total energy + Delta-G solvation = -3220.439169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.08557 -38.83031 -36.93163 -35.21980 -32.90802 -32.51533 -31.69989 -30.07788 -28.05577 -27.00964 -25.90412 -23.07245 -22.77584 -22.01214 -20.93048 -18.30392 -17.94823 -16.59458 -16.29477 -16.14093 -15.87985 -15.30138 -14.82742 -14.40440 -14.13885 -13.63593 -13.42558 -13.35415 -13.06127 -12.98325 -12.72351 -12.31088 -12.06402 -11.83785 -11.69339 -11.60314 -11.35358 -11.25899 -11.05982 -10.89198 -10.71436 -10.51756 -10.39111 -10.12764 -9.61262 -8.97016 -8.67290 -8.43998 -8.23563 -7.64808 -6.04507 -4.08942 1.32539 1.46864 3.29108 3.36399 3.39418 3.46127 3.59480 4.05789 4.27925 4.45100 4.84438 4.89841 5.03987 5.18650 5.28607 5.30321 5.34677 5.38358 5.53333 5.62960 5.65630 5.68311 5.74650 5.81236 5.91449 6.02748 6.06348 6.22474 6.23583 6.44383 6.48470 6.49756 6.75442 6.91015 7.08627 7.45307 7.56494 7.66313 7.92461 8.24132 8.44109 8.91151 9.12325 9.56357 11.03607 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.004826 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.267385 B = 5800.660969 C = 6646.326252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.533 6.533 15 C -0.107 4.107 16 C -0.062 4.062 17 C -0.087 4.087 18 C -0.149 4.149 19 C 0.098 3.902 20 O -0.503 6.503 21 C -0.145 4.145 22 C -0.053 4.053 23 C -0.117 4.117 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.388 0.612 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -4.114 15.155 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.294 3.706 14 O -0.409 6.409 15 C -0.147 4.147 16 C -0.063 4.063 17 C -0.106 4.106 18 C -0.168 4.168 19 C 0.054 3.946 20 O -0.313 6.313 21 C -0.164 4.164 22 C -0.053 4.053 23 C -0.173 4.173 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.243 0.757 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.501 -3.855 15.295 16.705 hybrid contribution 1.258 0.240 -0.736 1.477 sum -4.243 -3.615 14.558 15.589 Atomic orbital electron populations 1.22228 0.96854 1.01423 1.02284 1.21420 0.93476 0.84312 1.02679 1.48267 1.63939 1.13219 1.07686 1.19253 0.96218 0.93617 0.78182 1.21478 0.96963 1.31709 1.06182 0.92473 1.24931 0.97799 0.94954 0.96423 1.69939 1.35570 1.33543 1.14366 0.86463 0.84728 0.78048 0.78299 1.19828 1.20972 1.20896 1.20132 0.78825 0.87007 0.84685 1.90692 1.45224 1.17938 1.87082 1.20825 1.03672 0.98342 0.91852 1.19281 0.93887 0.97146 0.95972 1.20871 0.95781 0.98837 0.95072 1.21280 0.99408 0.98154 0.97955 1.18380 0.93074 0.93846 0.89309 1.84787 1.84644 1.30833 1.31076 1.21170 0.97054 1.01312 0.96860 1.19547 0.96278 0.94668 0.94808 1.20838 0.92983 1.02544 1.00962 0.92045 0.92164 0.93090 0.89982 0.91721 0.95081 0.93966 0.92806 0.88651 0.88523 0.85702 0.85719 0.75678 0.85733 0.91179 0.91428 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 5 C -0.52 -14.82 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.30 6.89 -10.98 -0.08 10.23 16 14 O -0.53 -13.32 15.61 5.55 0.09 -13.24 16 15 C -0.11 -1.58 3.70 -29.03 -0.11 -1.69 16 16 C -0.06 -0.96 4.37 -104.60 -0.46 -1.41 16 17 C -0.09 -1.28 9.67 -39.61 -0.38 -1.66 16 18 C -0.15 -2.05 9.99 -39.43 -0.39 -2.45 16 19 C 0.10 1.34 6.70 -39.22 -0.26 1.08 16 20 O -0.50 -5.94 13.50 -19.44 -0.26 -6.20 16 21 C -0.15 -2.00 9.64 -39.43 -0.38 -2.38 16 22 C -0.05 -0.77 5.88 -104.64 -0.62 -1.39 16 23 C -0.12 -1.47 9.21 36.01 0.33 -1.14 16 24 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 27 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 32 H 0.10 1.22 7.31 -51.93 -0.38 0.84 16 33 H 0.10 1.19 6.03 -51.93 -0.31 0.88 16 34 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.39 2.85 9.06 45.56 0.41 3.26 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.07 1.02 6.15 -51.93 -0.32 0.70 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -34.64 336.53 -7.29 -41.93 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.03 Total: 2.36 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.44 Total: -8.14 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.31 Total: -38.63 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.18 Total: -19.44 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.64 -7.29 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345666690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.124 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds