Wall clock time and date at job start Thu Apr 9 2020 13:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47165 * 2 1 4 4 C 1.46493 * 120.00047 * 270.00113 * 3 2 1 5 5 C 1.50705 * 109.47050 * 269.99763 * 4 3 2 6 6 H 1.08001 * 119.99379 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31507 * 119.99882 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47026 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46949 * 120.00138 * 9 7 5 12 12 H 1.48498 * 109.46958 * 239.99821 * 9 7 5 13 13 C 1.34781 * 119.99843 * 89.99620 * 3 2 1 14 14 O 1.21284 * 119.99817 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99795 * 359.97438 * 13 3 2 16 16 C 1.50706 * 109.46894 * 179.97438 * 15 13 3 17 17 C 1.38289 * 119.94594 * 265.00260 * 16 15 13 18 18 C 1.38116 * 120.05752 * 180.02562 * 17 16 15 19 19 C 1.38755 * 119.94255 * 359.97438 * 18 17 16 20 20 O 1.35905 * 120.05367 * 179.97438 * 19 18 17 21 21 C 1.38709 * 119.89228 * 0.27369 * 19 18 17 22 22 C 1.38171 * 119.93737 * 359.49050 * 21 19 18 23 23 C 1.50701 * 119.96764 * 180.23073 * 22 21 19 24 24 H 1.09008 * 109.47266 * 60.00317 * 1 2 3 25 25 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47638 * 300.00502 * 1 2 3 27 27 H 1.08992 * 109.47337 * 240.00217 * 2 1 3 28 28 H 1.09003 * 109.46858 * 119.99510 * 2 1 3 29 29 H 1.08997 * 109.47539 * 29.99577 * 4 3 2 30 30 H 1.08998 * 109.47414 * 149.99890 * 4 3 2 31 31 H 0.96999 * 119.99628 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47424 * 60.00412 * 15 13 3 33 33 H 1.08992 * 109.47489 * 300.00008 * 15 13 3 34 34 H 1.08005 * 119.96801 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.03129 * 179.97438 * 18 17 16 36 36 H 0.96705 * 113.99576 * 90.00130 * 20 19 18 37 37 H 1.07996 * 120.03256 * 179.72793 * 21 19 18 38 38 H 1.09003 * 109.47398 * 270.25770 * 23 22 21 39 39 H 1.09001 * 109.47368 * 30.25927 * 23 22 21 40 40 H 1.09000 * 109.47060 * 150.25759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0960 7 6 4.1495 2.3905 -2.8773 8 7 3.3495 3.1265 -3.6174 9 14 5.9140 2.0975 -3.4161 10 1 6.6011 1.2413 -2.4162 11 1 5.9220 1.4190 -4.7371 12 1 6.6212 3.3989 -3.5238 13 6 2.2429 2.0166 1.1673 14 8 2.6467 3.1602 1.1673 15 6 1.9911 1.3063 2.4723 16 6 2.3181 2.2294 3.6178 17 6 3.5666 2.1787 4.2104 18 6 3.8686 3.0232 5.2607 19 6 2.9183 3.9235 5.7209 20 8 3.2130 4.7551 6.7546 21 6 1.6651 3.9689 5.1282 22 6 1.3696 3.1253 4.0746 23 6 0.0099 3.1777 3.4268 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5818 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.6758 3.5176 -4.4429 32 1 2.6209 0.4187 2.5304 33 1 0.9430 1.0126 2.5298 34 1 4.3061 1.4780 3.8516 35 1 4.8437 2.9829 5.7235 36 1 3.5948 5.6009 6.4823 37 1 0.9222 4.6657 5.4874 38 1 -0.6620 2.4866 3.9358 39 1 -0.3878 4.1900 3.4982 40 1 0.0961 2.8943 2.3778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345666690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:45 Heat of formation + Delta-G solvation = -88.345655 kcal Electronic energy + Delta-G solvation = -21607.887182 eV Core-core repulsion = 18386.437886 eV Total energy + Delta-G solvation = -3221.449297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.29600 -40.20126 -37.97741 -36.84014 -34.93569 -33.57898 -32.92871 -31.53207 -29.54370 -28.33486 -27.25723 -24.88608 -24.08025 -23.14862 -22.05756 -19.83481 -18.91594 -18.61717 -17.88611 -17.41062 -17.14784 -16.63736 -16.20899 -15.94708 -15.60890 -14.86022 -14.64529 -14.47940 -14.43053 -14.14518 -14.03345 -13.75448 -13.49821 -13.23371 -13.06050 -12.97667 -12.72570 -12.60430 -12.53028 -12.46844 -12.15614 -12.12673 -11.80815 -11.67295 -11.36942 -10.64799 -10.60175 -9.72709 -9.39908 -9.32650 -8.22037 -6.36641 0.26260 0.41729 1.35583 1.37895 1.49598 1.89797 2.29997 2.42577 2.75137 3.07542 3.32702 3.72351 3.86132 3.93086 4.02755 4.18846 4.27556 4.33035 4.46331 4.54449 4.57304 4.67048 4.75627 4.79211 4.88306 4.98293 5.02621 5.06327 5.08570 5.22467 5.25794 5.40139 5.43399 5.45727 5.59912 5.68374 5.88968 5.92994 6.08165 6.71901 6.83567 6.85655 7.29821 7.54928 8.85056 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.004826 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.267385 B = 5800.660969 C = 6646.326252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.502 3.498 14 O -0.590 6.590 15 C -0.090 4.090 16 C -0.087 4.087 17 C -0.099 4.099 18 C -0.160 4.160 19 C 0.097 3.903 20 O -0.508 6.508 21 C -0.157 4.157 22 C -0.064 4.064 23 C -0.115 4.115 24 H 0.036 0.964 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.020 0.980 30 H -0.006 1.006 31 H 0.266 0.734 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.408 0.592 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -5.739 16.637 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.471 6.471 15 C -0.130 4.130 16 C -0.088 4.088 17 C -0.117 4.117 18 C -0.179 4.179 19 C 0.053 3.947 20 O -0.321 6.321 21 C -0.175 4.175 22 C -0.064 4.064 23 C -0.171 4.171 24 H 0.056 0.944 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.038 0.962 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.266 0.734 37 H 0.158 0.842 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.339 -5.518 16.792 18.464 hybrid contribution 1.175 0.806 -1.143 1.827 sum -4.164 -4.713 15.649 16.865 Atomic orbital electron populations 1.22166 0.94571 1.03538 1.01729 1.21772 0.95361 0.81377 1.03973 1.48290 1.64062 1.15101 1.06119 1.18665 0.95166 0.91441 0.80586 1.21755 0.97944 1.31737 1.06420 0.92869 1.25848 1.02298 0.94528 0.96485 1.70058 1.37672 1.34350 1.14859 0.85389 0.79145 0.77965 0.78435 1.19050 1.19411 1.20893 1.21112 0.77204 0.86504 0.86107 1.90654 1.47767 1.20667 1.88024 1.20772 1.05986 0.98259 0.87947 1.19451 0.94578 0.98192 0.96555 1.21114 0.95884 0.99321 0.95423 1.21518 1.00297 0.98050 0.97989 1.18521 0.93086 0.93933 0.89154 1.84730 1.84834 1.31841 1.30657 1.21409 0.97646 1.01560 0.96911 1.19845 0.97021 0.94512 0.95063 1.20857 0.92784 1.03687 0.99775 0.94441 0.88619 0.91858 0.91138 0.87952 0.96165 0.98744 0.92480 0.86087 0.85623 0.84782 0.84090 0.73377 0.84160 0.88306 0.90906 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.05 16 2 C 0.10 2.85 5.93 86.38 0.51 3.36 16 3 N -0.60 -25.15 2.46 -826.16 -2.03 -27.18 16 4 C 0.26 14.24 5.16 85.64 0.44 14.68 16 5 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.41 5.46 84.66 0.46 0.88 16 8 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 9 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 C 0.50 20.46 6.89 87.66 0.60 21.06 16 14 O -0.59 -30.62 15.61 -3.04 -0.05 -30.67 16 15 C -0.09 -2.50 3.70 29.10 0.11 -2.39 16 16 C -0.09 -2.57 4.37 -19.85 -0.09 -2.66 16 17 C -0.10 -2.80 9.67 22.25 0.22 -2.58 16 18 C -0.16 -4.20 9.99 22.36 0.22 -3.98 16 19 C 0.10 2.53 6.70 22.51 0.15 2.68 16 20 O -0.51 -11.06 13.50 -92.48 -1.25 -12.31 16 21 C -0.16 -4.12 9.64 22.37 0.22 -3.90 16 22 C -0.06 -1.80 5.88 -19.88 -0.12 -1.91 16 23 C -0.11 -2.73 9.21 71.24 0.66 -2.08 16 24 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 27 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 28 H 0.10 2.23 6.44 -2.39 -0.02 2.22 16 29 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 30 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.12 2.70 7.31 -2.39 -0.02 2.69 16 33 H 0.13 2.71 6.03 -2.39 -0.01 2.69 16 34 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.41 5.25 9.06 -74.05 -0.67 4.58 16 37 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 40 H 0.05 1.43 6.15 -2.39 -0.01 1.42 16 Total: -1.00 -78.26 336.53 3.72 -74.54 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.37 Total: 15.73 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.36 Total: -10.92 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.74 Total: -83.56 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.30 Total: -42.98 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -78.26 3.72 -74.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345666690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.808 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds