Wall clock time and date at job start Thu Apr 9 2020 13:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46964 * 2 1 4 4 C 1.46492 * 120.00321 * 269.99930 * 3 2 1 5 5 C 1.50698 * 109.47527 * 270.00548 * 4 3 2 6 6 H 1.08005 * 120.00069 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00239 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00165 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47249 * 90.00138 * 9 7 5 11 11 H 1.48499 * 109.47510 * 210.00364 * 9 7 5 12 12 H 1.48500 * 109.47137 * 330.00451 * 9 7 5 13 13 C 1.34779 * 119.99726 * 90.00183 * 3 2 1 14 14 O 1.21280 * 119.99859 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00088 * 0.02562 * 13 3 2 16 16 C 1.52997 * 109.46983 * 179.97438 * 15 13 3 17 17 C 1.50707 * 109.46986 * 179.97438 * 16 15 13 18 18 C 1.38289 * 119.96926 * 270.01927 * 17 16 15 19 19 C 1.38240 * 120.11036 * 180.02562 * 18 17 16 20 20 C 1.38173 * 120.05812 * 359.67646 * 19 18 17 21 21 C 1.38709 * 119.93675 * 0.57760 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.72475 * 21 20 19 23 23 C 1.38116 * 119.97322 * 89.99956 * 17 16 15 24 24 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47209 * 299.99946 * 1 2 3 26 26 H 1.09000 * 109.47636 * 59.99117 * 1 2 3 27 27 H 1.08999 * 109.47111 * 240.00690 * 2 1 3 28 28 H 1.08997 * 109.47084 * 120.00126 * 2 1 3 29 29 H 1.09005 * 109.47072 * 30.00649 * 4 3 2 30 30 H 1.09002 * 109.47494 * 150.00014 * 4 3 2 31 31 H 0.96998 * 119.99783 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47472 * 59.99277 * 15 13 3 33 33 H 1.09007 * 109.46797 * 299.99211 * 15 13 3 34 34 H 1.09002 * 109.47572 * 59.99381 * 16 15 13 35 35 H 1.09000 * 109.47040 * 299.99035 * 16 15 13 36 36 H 1.08001 * 119.94341 * 0.02562 * 18 17 16 37 37 H 1.08006 * 119.97312 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.03009 * 180.29712 * 20 19 18 39 39 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 40 40 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3898 -2.8779 8 7 3.3489 3.1259 -3.6180 9 14 5.9133 2.0968 -3.4169 10 1 5.9773 0.8756 -4.2593 11 1 6.3920 3.2641 -4.2003 12 1 6.7735 1.9179 -2.2197 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9923 1.3059 2.4723 16 6 2.3242 2.2431 3.6352 17 6 2.0731 1.5326 4.9404 18 6 0.8285 1.6063 5.5386 19 6 0.5950 0.9562 6.7361 20 6 1.6033 0.2253 7.3348 21 6 2.8540 0.1543 6.7394 22 8 3.8490 -0.5592 7.3291 23 6 3.0860 0.8081 5.5377 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5816 1.6879 -2.0283 30 1 2.0955 3.1412 -1.1383 31 1 3.6750 3.5164 -4.4438 32 1 2.6228 0.4186 2.5298 33 1 0.9444 1.0114 2.5303 34 1 1.6941 3.1307 3.5779 35 1 3.3722 2.5371 3.5771 36 1 0.0375 2.1727 5.0695 37 1 -0.3778 1.0155 7.2016 38 1 1.4190 -0.2863 8.2678 39 1 4.3923 -0.0445 7.9415 40 1 4.0578 0.7510 5.0701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520818051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:20 Heat of formation + Delta-G solvation = -69.198080 kcal Electronic energy + Delta-G solvation = -20948.576414 eV Core-core repulsion = 17727.957418 eV Total energy + Delta-G solvation = -3220.618996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98731 -39.02288 -37.07776 -35.30113 -33.70304 -32.72558 -30.32633 -30.03965 -29.48083 -27.12127 -24.70238 -22.98748 -22.73036 -22.33680 -21.02007 -18.23755 -18.14823 -16.61329 -16.45981 -16.18374 -16.01110 -15.44799 -15.21170 -14.78401 -14.31159 -13.93977 -13.53404 -13.33990 -13.15759 -12.85908 -12.52995 -12.27664 -12.05287 -11.82965 -11.76248 -11.71093 -11.42345 -11.15540 -10.92003 -10.87347 -10.62300 -10.56745 -10.47147 -10.10937 -9.61264 -9.05567 -8.86535 -8.64879 -8.41947 -7.62954 -6.02728 -4.07307 1.09070 1.17984 3.30970 3.37386 3.40856 3.45374 3.48732 3.93863 4.07368 4.46100 4.69043 4.73966 4.97068 5.15733 5.22163 5.24407 5.31121 5.34442 5.37402 5.44159 5.62658 5.69156 5.72037 5.85802 5.86986 6.02153 6.10938 6.24310 6.25628 6.26402 6.31068 6.51671 6.54200 6.68283 7.10046 7.45611 7.47161 7.58511 7.94127 8.26010 8.46833 8.92476 9.13555 9.57860 11.05340 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003678 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.811711 B = 7610.879354 C = 8138.969959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.544 6.544 15 C -0.134 4.134 16 C -0.068 4.068 17 C -0.056 4.056 18 C -0.126 4.126 19 C -0.103 4.103 20 C -0.155 4.155 21 C 0.103 3.897 22 O -0.501 6.501 23 C -0.142 4.142 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.389 0.611 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -7.053 19.592 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.422 6.422 15 C -0.174 4.174 16 C -0.105 4.105 17 C -0.057 4.057 18 C -0.144 4.144 19 C -0.121 4.121 20 C -0.173 4.173 21 C 0.059 3.941 22 O -0.311 6.311 23 C -0.160 4.160 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.244 0.756 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.798 -6.802 19.049 21.042 hybrid contribution 1.149 0.040 -0.134 1.158 sum -4.649 -6.762 18.915 20.618 Atomic orbital electron populations 1.22216 0.96860 1.01365 1.02263 1.21408 0.93470 0.84269 1.02653 1.48264 1.63670 1.13221 1.07810 1.19251 0.96187 0.93629 0.78266 1.21449 0.96982 1.31802 1.06190 0.92507 1.24937 0.97843 0.94941 0.96422 1.69935 1.35689 1.33492 1.14331 0.86503 0.84724 0.77657 0.78582 1.20658 1.21091 1.19905 1.20329 0.78446 0.86945 0.85207 1.90663 1.45990 1.18229 1.87332 1.21693 1.03208 0.99594 0.92886 1.20391 1.03929 0.97400 0.88814 1.19931 0.93089 0.96341 0.96309 1.21149 0.96811 1.00604 0.95815 1.21016 0.98779 0.96760 0.95547 1.21369 0.93548 1.01219 1.01203 1.18475 0.88454 0.93982 0.93161 1.84829 1.45199 1.38566 1.62503 1.21401 1.00419 0.97975 0.96232 0.92230 0.93062 0.92095 0.90062 0.91681 0.95121 0.93942 0.92753 0.89480 0.89526 0.89970 0.89980 0.85618 0.85702 0.85755 0.75558 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.67 2.46 -175.06 -0.43 -13.10 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 5 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.50 10.40 7.67 -10.99 -0.08 10.31 16 14 O -0.54 -13.59 15.56 5.56 0.09 -13.50 16 15 C -0.13 -1.97 4.23 -27.89 -0.12 -2.09 16 16 C -0.07 -0.93 4.63 -27.88 -0.13 -1.06 16 17 C -0.06 -0.67 5.13 -104.64 -0.54 -1.21 16 18 C -0.13 -1.31 9.70 -39.56 -0.38 -1.70 16 19 C -0.10 -0.95 10.04 -39.60 -0.40 -1.35 16 20 C -0.15 -1.50 9.99 -39.43 -0.39 -1.89 16 21 C 0.10 1.12 6.70 -39.22 -0.26 0.86 16 22 O -0.50 -4.87 13.50 -19.44 -0.26 -5.13 16 23 C -0.14 -1.65 9.64 -39.43 -0.38 -2.03 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.65 7.22 -51.92 -0.38 0.28 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.89 6.44 -51.93 -0.33 0.56 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 33 H 0.09 1.11 7.19 -51.92 -0.37 0.73 16 34 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 35 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.39 1.88 9.06 45.56 0.41 2.29 16 40 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -34.48 341.18 -7.72 -42.20 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.19 Total: 1.10 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.78 Total: -7.64 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.31 Total: -39.18 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.18 Total: -18.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.48 -7.72 -42.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520818051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.999 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds