Wall clock time and date at job start Thu Apr 9 2020 13:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46964 * 2 1 4 4 C 1.46492 * 120.00321 * 269.99930 * 3 2 1 5 5 C 1.50698 * 109.47527 * 270.00548 * 4 3 2 6 6 H 1.08005 * 120.00069 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00239 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00165 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47249 * 90.00138 * 9 7 5 11 11 H 1.48499 * 109.47510 * 210.00364 * 9 7 5 12 12 H 1.48500 * 109.47137 * 330.00451 * 9 7 5 13 13 C 1.34779 * 119.99726 * 90.00183 * 3 2 1 14 14 O 1.21280 * 119.99859 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00088 * 0.02562 * 13 3 2 16 16 C 1.52997 * 109.46983 * 179.97438 * 15 13 3 17 17 C 1.50707 * 109.46986 * 179.97438 * 16 15 13 18 18 C 1.38289 * 119.96926 * 270.01927 * 17 16 15 19 19 C 1.38240 * 120.11036 * 180.02562 * 18 17 16 20 20 C 1.38173 * 120.05812 * 359.67646 * 19 18 17 21 21 C 1.38709 * 119.93675 * 0.57760 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.72475 * 21 20 19 23 23 C 1.38116 * 119.97322 * 89.99956 * 17 16 15 24 24 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47209 * 299.99946 * 1 2 3 26 26 H 1.09000 * 109.47636 * 59.99117 * 1 2 3 27 27 H 1.08999 * 109.47111 * 240.00690 * 2 1 3 28 28 H 1.08997 * 109.47084 * 120.00126 * 2 1 3 29 29 H 1.09005 * 109.47072 * 30.00649 * 4 3 2 30 30 H 1.09002 * 109.47494 * 150.00014 * 4 3 2 31 31 H 0.96998 * 119.99783 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47472 * 59.99277 * 15 13 3 33 33 H 1.09007 * 109.46797 * 299.99211 * 15 13 3 34 34 H 1.09002 * 109.47572 * 59.99381 * 16 15 13 35 35 H 1.09000 * 109.47040 * 299.99035 * 16 15 13 36 36 H 1.08001 * 119.94341 * 0.02562 * 18 17 16 37 37 H 1.08006 * 119.97312 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.03009 * 180.29712 * 20 19 18 39 39 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 40 40 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3898 -2.8779 8 7 3.3489 3.1259 -3.6180 9 14 5.9133 2.0968 -3.4169 10 1 5.9773 0.8756 -4.2593 11 1 6.3920 3.2641 -4.2003 12 1 6.7735 1.9179 -2.2197 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9923 1.3059 2.4723 16 6 2.3242 2.2431 3.6352 17 6 2.0731 1.5326 4.9404 18 6 0.8285 1.6063 5.5386 19 6 0.5950 0.9562 6.7361 20 6 1.6033 0.2253 7.3348 21 6 2.8540 0.1543 6.7394 22 8 3.8490 -0.5592 7.3291 23 6 3.0860 0.8081 5.5377 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5816 1.6879 -2.0283 30 1 2.0955 3.1412 -1.1383 31 1 3.6750 3.5164 -4.4438 32 1 2.6228 0.4186 2.5298 33 1 0.9444 1.0114 2.5303 34 1 1.6941 3.1307 3.5779 35 1 3.3722 2.5371 3.5771 36 1 0.0375 2.1727 5.0695 37 1 -0.3778 1.0155 7.2016 38 1 1.4190 -0.2863 8.2678 39 1 4.3923 -0.0445 7.9415 40 1 4.0578 0.7510 5.0701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520818051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:20 Heat of formation + Delta-G solvation = -92.019260 kcal Electronic energy + Delta-G solvation = -20949.566015 eV Core-core repulsion = 17727.957418 eV Total energy + Delta-G solvation = -3221.608596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98746 -40.43563 -37.88003 -36.96916 -35.06120 -34.54664 -31.68644 -31.13409 -30.45274 -28.93180 -26.12710 -24.59476 -23.81931 -23.46841 -21.99665 -19.81286 -18.99034 -18.61326 -17.80635 -17.25617 -17.17644 -16.94034 -16.30444 -16.06009 -15.98538 -14.91194 -14.83242 -14.65428 -14.47100 -14.04683 -13.81318 -13.62937 -13.51203 -13.23681 -13.10479 -12.83564 -12.71731 -12.66871 -12.48550 -12.35518 -12.18867 -12.01718 -11.75397 -11.70794 -11.35449 -10.65012 -10.59962 -9.76778 -9.49493 -9.43177 -8.23187 -6.38274 0.32190 0.39712 1.35290 1.38330 1.48721 1.85359 2.30718 2.44985 2.73060 3.05966 3.31221 3.61721 3.94542 4.02139 4.11154 4.18107 4.21608 4.29821 4.42808 4.46049 4.57577 4.63417 4.66065 4.84111 4.97562 4.99886 5.01922 5.05642 5.09933 5.20729 5.22716 5.39798 5.49510 5.50633 5.57799 5.69277 5.86545 5.95196 6.06384 6.69427 6.81749 6.87809 7.27741 7.50053 8.83847 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003678 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.811711 B = 7610.879354 C = 8138.969959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.599 6.599 15 C -0.116 4.116 16 C -0.061 4.061 17 C -0.065 4.065 18 C -0.131 4.131 19 C -0.098 4.098 20 C -0.155 4.155 21 C 0.098 3.902 22 O -0.512 6.512 23 C -0.157 4.157 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.021 0.979 30 H -0.004 1.004 31 H 0.267 0.733 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.409 0.591 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -9.194 21.494 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.335 5.335 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.481 6.481 15 C -0.155 4.155 16 C -0.098 4.098 17 C -0.065 4.065 18 C -0.149 4.149 19 C -0.115 4.115 20 C -0.173 4.173 21 C 0.054 3.946 22 O -0.326 6.326 23 C -0.176 4.176 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.038 0.962 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.268 0.732 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.230 -8.986 20.977 23.656 hybrid contribution 1.255 0.703 -0.662 1.583 sum -4.976 -8.284 20.315 22.496 Atomic orbital electron populations 1.22148 0.94477 1.03487 1.01749 1.21738 0.95414 0.81384 1.03774 1.48314 1.63808 1.15073 1.06331 1.18684 0.95207 0.91503 0.80581 1.21725 0.97955 1.32035 1.06555 0.92969 1.25873 1.02475 0.94437 0.96414 1.70054 1.37814 1.34178 1.14789 0.85406 0.78905 0.78241 0.78199 1.18760 1.20536 1.19815 1.21412 0.76970 0.86534 0.86744 1.90629 1.48344 1.20872 1.88243 1.21649 1.05283 0.99373 0.89226 1.20242 1.02472 0.97243 0.89887 1.19700 0.94102 0.97111 0.95631 1.21336 0.96412 1.00789 0.96368 1.21338 0.99879 0.95534 0.94796 1.21655 0.92981 1.00889 1.01788 1.18582 0.89276 0.93774 0.92999 1.84771 1.45459 1.39254 1.63067 1.21435 1.00255 0.98870 0.97039 0.88701 0.91914 0.94308 0.91168 0.88313 0.96150 0.98597 0.92389 0.87749 0.86562 0.90831 0.92036 0.84449 0.82869 0.83767 0.73247 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.10 3.09 5.93 86.38 0.51 3.60 16 3 N -0.60 -26.10 2.46 -826.17 -2.03 -28.13 16 4 C 0.26 14.47 5.16 85.63 0.44 14.91 16 5 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 9 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.49 20.77 7.67 87.66 0.67 21.44 16 14 O -0.60 -31.46 15.56 -3.03 -0.05 -31.51 16 15 C -0.12 -3.27 4.23 29.85 0.13 -3.14 16 16 C -0.06 -1.66 4.63 29.85 0.14 -1.52 16 17 C -0.07 -1.46 5.13 -19.88 -0.10 -1.56 16 18 C -0.13 -2.41 9.70 22.28 0.22 -2.19 16 19 C -0.10 -1.47 10.04 22.25 0.22 -1.25 16 20 C -0.15 -2.51 9.99 22.37 0.22 -2.29 16 21 C 0.10 1.92 6.70 22.51 0.15 2.07 16 22 O -0.51 -8.95 13.50 -92.48 -1.25 -10.20 16 23 C -0.16 -3.49 9.64 22.36 0.22 -3.27 16 24 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.43 7.22 -2.38 -0.02 1.41 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 28 H 0.10 2.42 6.44 -2.39 -0.02 2.40 16 29 H 0.02 1.15 8.07 -2.38 -0.02 1.13 16 30 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 32 H 0.10 2.63 7.40 -2.39 -0.02 2.61 16 33 H 0.12 2.62 7.19 -2.38 -0.02 2.60 16 34 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 35 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.41 3.17 9.06 -74.05 -0.67 2.50 16 40 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -78.07 341.18 3.61 -74.46 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.36 Total: 11.99 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.26 Total: -7.47 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.74 Total: -84.93 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.30 Total: -41.71 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.07 3.61 -74.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520818051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.558 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds