Wall clock time and date at job start Thu Apr 9 2020 13:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00025 * 2 1 4 4 H 1.09001 * 109.47425 * 330.00524 * 3 2 1 5 5 C 1.53000 * 109.47015 * 90.00204 * 3 2 1 6 6 C 1.52996 * 109.47072 * 210.00207 * 3 2 1 7 7 N 1.46493 * 109.47161 * 65.00286 * 6 3 2 8 8 C 1.34786 * 120.00022 * 179.97438 * 7 6 3 9 9 O 1.21277 * 119.99553 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99612 * 179.97438 * 8 7 6 11 11 H 1.08990 * 109.47912 * 321.80694 * 10 8 7 12 12 C 1.50705 * 109.46854 * 81.81299 * 10 8 7 13 13 H 1.07993 * 120.00390 * 54.38466 * 12 10 8 14 14 C 1.37882 * 119.99479 * 234.37661 * 12 10 8 15 15 N 1.31512 * 119.99947 * 172.37721 * 14 12 10 16 16 Si 1.86798 * 120.00166 * 352.38096 * 14 12 10 17 17 H 1.48497 * 109.47453 * 83.58958 * 16 14 12 18 18 H 1.48505 * 109.46920 * 203.59092 * 16 14 12 19 19 H 1.48506 * 109.47194 * 323.58826 * 16 14 12 20 20 C 1.50700 * 109.46849 * 201.80334 * 10 8 7 21 21 C 1.38239 * 120.00507 * 292.62635 * 20 10 8 22 22 C 1.38236 * 119.99932 * 179.78092 * 21 20 10 23 23 C 1.38234 * 119.99791 * 0.44590 * 22 21 20 24 24 C 1.38229 * 120.00455 * 359.81042 * 23 22 21 25 25 C 1.38235 * 119.99962 * 359.97438 * 24 23 22 26 26 H 1.09010 * 109.47246 * 299.99817 * 1 2 3 27 27 H 1.09000 * 109.47687 * 59.99337 * 1 2 3 28 28 H 1.08999 * 109.47682 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47356 * 300.00343 * 5 3 2 30 30 H 1.09005 * 109.47221 * 59.99718 * 5 3 2 31 31 H 1.09001 * 109.47542 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46920 * 184.99980 * 6 3 2 33 33 H 1.09004 * 109.47183 * 304.99908 * 6 3 2 34 34 H 0.97002 * 120.00420 * 359.97438 * 7 6 3 35 35 H 0.96996 * 120.00183 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.99784 * 359.97438 * 21 20 10 37 37 H 1.07999 * 119.99768 * 180.27239 * 22 21 20 38 38 H 1.08006 * 119.99249 * 179.82652 * 23 22 21 39 39 H 1.08002 * 120.00356 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.99877 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3588 1.2632 -0.7213 7 7 3.1475 0.9331 -2.1328 8 6 4.2012 0.8406 -2.9683 9 8 5.3240 1.0311 -2.5515 10 6 3.9838 0.5005 -4.4202 11 1 3.1893 -0.2408 -4.5048 12 6 3.5920 1.7450 -5.1744 13 1 4.2176 2.6241 -5.1279 14 6 2.4349 1.7612 -5.9241 15 7 2.0138 2.8862 -6.4593 16 14 1.4653 0.1851 -6.1794 17 1 0.5734 -0.0418 -5.0139 18 1 0.6474 0.3015 -7.4134 19 1 2.4043 -0.9575 -6.3140 20 6 5.2568 -0.0590 -5.0011 21 6 6.3660 0.7533 -5.1459 22 6 7.5351 0.2388 -5.6745 23 6 7.5922 -1.0854 -6.0669 24 6 6.4814 -1.8963 -5.9270 25 6 5.3137 -1.3830 -5.3943 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.2569 1.8013 1.9564 30 1 2.8829 1.0773 1.9564 31 1 2.6606 2.7673 1.4426 32 1 3.8426 2.2370 -0.6443 33 1 3.9931 0.5051 -0.2618 34 1 2.2494 0.7811 -2.4663 35 1 1.1996 2.8977 -6.9863 36 1 6.3201 1.7890 -4.8431 37 1 8.4030 0.8723 -5.7836 38 1 8.5048 -1.4866 -6.4825 39 1 6.5262 -2.9310 -6.2332 40 1 4.4460 -2.0167 -5.2846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531770346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:23 Heat of formation + Delta-G solvation = -68.999020 kcal Electronic energy + Delta-G solvation = -21672.386018 eV Core-core repulsion = 18451.775655 eV Total energy + Delta-G solvation = -3220.610364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.37171 -38.46038 -37.60219 -34.16136 -33.58664 -31.62882 -31.35240 -30.09994 -27.98610 -26.83945 -25.68723 -23.42114 -21.81903 -21.47114 -20.86233 -19.21750 -17.15066 -16.87648 -16.47775 -16.05490 -15.66990 -15.08322 -14.65904 -14.54512 -14.16173 -13.93769 -13.67675 -13.05174 -12.90158 -12.72553 -12.60504 -12.50639 -12.20670 -12.18354 -11.96226 -11.70622 -11.43358 -11.12217 -11.05603 -10.72424 -10.46093 -10.13018 -10.01029 -9.72301 -9.50929 -9.01840 -8.66331 -8.37257 -8.10286 -7.78827 -6.31587 -4.33085 2.17291 2.24416 3.09701 3.22610 3.25273 3.66073 3.73637 3.93663 4.19863 4.66022 4.81822 5.04206 5.07052 5.12991 5.25428 5.35457 5.55084 5.57399 5.61362 5.62995 5.67755 5.75134 5.89136 5.95652 5.99892 6.06048 6.20061 6.27179 6.39625 6.44071 6.76747 6.89207 7.11861 7.16592 7.19775 7.28254 7.31176 7.62699 7.82427 8.18252 8.35376 8.72959 9.17338 9.26542 10.79828 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.006336 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.746550 B = 4418.039653 C = 5417.399865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.381 6.381 3 C 0.071 3.929 4 H 0.069 0.931 5 C -0.170 4.170 6 C 0.126 3.874 7 N -0.730 5.730 8 C 0.533 3.467 9 O -0.561 6.561 10 C 0.033 3.967 11 H 0.059 0.941 12 C -0.505 4.505 13 H 0.084 0.916 14 C 0.082 3.918 15 N -0.881 5.881 16 Si 0.866 3.134 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.259 1.259 20 C -0.032 4.032 21 C -0.069 4.069 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.131 4.131 25 C -0.133 4.133 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.399 0.601 35 H 0.269 0.731 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -5.519 9.454 11.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.300 6.300 3 C 0.013 3.987 4 H 0.087 0.913 5 C -0.228 4.228 6 C 0.002 3.998 7 N -0.382 5.382 8 C 0.322 3.678 9 O -0.439 6.439 10 C 0.011 3.989 11 H 0.077 0.923 12 C -0.542 4.542 13 H 0.102 0.898 14 C -0.123 4.123 15 N -0.517 5.517 16 Si 0.692 3.308 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.032 4.032 21 C -0.087 4.087 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.151 4.151 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.233 0.767 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.793 -5.437 9.636 11.093 hybrid contribution -1.389 -0.520 -0.425 1.543 sum -2.182 -5.958 9.211 11.185 Atomic orbital electron populations 1.22802 0.81326 1.02674 0.99968 1.87971 1.19433 1.27528 1.95064 1.22439 0.95144 0.85095 0.95976 0.91296 1.22192 1.02421 1.02007 0.96169 1.21319 0.94909 1.01513 0.82065 1.45846 1.10469 1.73565 1.08336 1.21418 0.83613 0.74465 0.88325 1.90566 1.23719 1.51367 1.78275 1.18329 0.92947 0.98449 0.89145 0.92332 1.20552 1.08288 0.96454 1.28927 0.89821 1.25051 0.96478 0.95982 0.94793 1.69870 1.22874 1.25575 1.33374 0.87001 0.80450 0.84772 0.78535 1.19722 1.20953 1.18368 1.19996 0.95245 0.92157 0.95847 1.20922 0.91782 0.99940 0.96044 1.21053 0.97973 0.95403 1.00561 1.20874 0.97989 0.94484 1.02693 1.20876 0.93650 0.98963 1.01441 1.21010 0.97605 0.95240 1.01279 0.94279 0.93752 0.89748 0.92295 0.91511 0.91186 0.90612 0.91325 0.76724 0.92103 0.86144 0.87105 0.87352 0.87272 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.40 16 2 O -0.38 -5.21 10.29 -35.23 -0.36 -5.57 16 3 C 0.07 0.92 2.75 -26.73 -0.07 0.84 16 4 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 5 C -0.17 -1.74 9.53 37.16 0.35 -1.38 16 6 C 0.13 2.01 5.34 -4.05 -0.02 1.99 16 7 N -0.73 -13.93 5.50 -60.30 -0.33 -14.26 16 8 C 0.53 12.02 6.94 -10.98 -0.08 11.94 16 9 O -0.56 -13.77 15.20 5.56 0.08 -13.68 16 10 C 0.03 0.77 2.20 -94.07 -0.21 0.57 16 11 H 0.06 1.31 4.73 -51.93 -0.25 1.07 16 12 C -0.50 -13.36 8.24 -34.44 -0.28 -13.65 16 13 H 0.08 2.46 7.72 -52.49 -0.40 2.06 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 15 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 16 Si 0.87 19.65 26.84 -169.99 -4.56 15.09 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.26 -5.73 6.97 56.52 0.39 -5.34 16 20 C -0.03 -0.72 4.52 -104.62 -0.47 -1.19 16 21 C -0.07 -1.53 8.04 -39.58 -0.32 -1.84 16 22 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 23 C -0.14 -2.49 10.05 -39.59 -0.40 -2.89 16 24 C -0.13 -2.36 10.05 -39.59 -0.40 -2.76 16 25 C -0.13 -2.72 9.67 -39.58 -0.38 -3.10 16 26 H 0.04 0.34 7.87 -51.92 -0.41 -0.07 16 27 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 7.25 8.47 -40.82 -0.35 6.91 16 35 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.12 2.81 7.47 -52.49 -0.39 2.41 16 37 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 2.07 7.96 -52.49 -0.42 1.66 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -30.86 337.78 -6.96 -37.82 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.97 Total: 10.68 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.68 Total: -10.90 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.44 Total: -38.52 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.28 Total: -19.26 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.56 Total: 15.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.86 -6.96 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531770346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.182 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds