Wall clock time and date at job start Thu Apr 9 2020 13:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46865 * 2 1 4 4 C 1.50700 * 109.47551 * 239.99390 * 2 1 3 5 5 H 1.08000 * 119.99799 * 239.99920 * 4 2 1 6 6 C 1.37870 * 119.99759 * 59.99822 * 4 2 1 7 7 N 1.31511 * 120.00232 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99891 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46916 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47000 * 119.99839 * 8 6 4 11 11 H 1.48496 * 109.46692 * 239.99751 * 8 6 4 12 12 N 1.46504 * 109.47030 * 119.99231 * 2 1 3 13 13 C 1.34784 * 119.99775 * 274.99836 * 12 2 1 14 14 O 1.21273 * 120.00030 * 0.28213 * 13 12 2 15 15 C 1.50704 * 119.99558 * 179.97438 * 13 12 2 16 16 C 1.52993 * 109.47627 * 294.63508 * 15 13 12 17 17 C 1.53002 * 109.46868 * 54.64017 * 15 13 12 18 18 C 1.50698 * 109.46858 * 174.63438 * 15 13 12 19 19 C 1.38292 * 119.97291 * 294.14905 * 18 15 13 20 20 C 1.38244 * 120.10905 * 179.72788 * 19 18 15 21 21 C 1.38163 * 120.05862 * 0.54075 * 20 19 18 22 22 C 1.38712 * 119.94101 * 359.73083 * 21 20 19 23 23 O 1.35906 * 120.05566 * 179.97438 * 22 21 20 24 24 C 1.38125 * 119.97378 * 114.41819 * 18 15 13 25 25 H 1.09006 * 109.46698 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47308 * 300.00632 * 1 2 3 27 27 H 1.08993 * 109.47067 * 60.00801 * 1 2 3 28 28 H 0.97000 * 120.00088 * 179.97438 * 7 6 4 29 29 H 0.96991 * 120.00207 * 95.00292 * 12 2 1 30 30 H 1.09010 * 109.46886 * 59.99759 * 16 15 13 31 31 H 1.08993 * 109.47363 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.47319 * 300.00470 * 16 15 13 33 33 H 1.09001 * 109.47229 * 59.99503 * 17 15 13 34 34 H 1.09003 * 109.46790 * 179.97438 * 17 15 13 35 35 H 1.08997 * 109.46811 * 299.99366 * 17 15 13 36 36 H 1.07999 * 119.94176 * 359.97438 * 19 18 15 37 37 H 1.08008 * 119.97081 * 180.25344 * 20 19 18 38 38 H 1.07995 * 120.02951 * 179.70824 * 21 20 19 39 39 H 0.96702 * 113.99594 * 270.02339 * 23 22 21 40 40 H 1.07999 * 120.02406 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9428 0.8293 -2.6034 8 14 2.3216 -1.1208 -4.0078 9 1 3.1467 -2.2873 -3.6034 10 1 1.1663 -1.5872 -4.8158 11 1 3.1467 -0.1878 -4.8163 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0179 2.3572 14 8 1.8538 1.1576 2.4127 15 6 2.6488 -0.7283 3.5879 16 6 1.6363 -1.7949 4.0097 17 6 3.9921 -1.3933 3.2808 18 6 2.8250 0.2669 4.7057 19 6 3.7836 1.2584 4.6033 20 6 3.9438 2.1763 5.6245 21 6 3.1537 2.0984 6.7552 22 6 2.1953 1.1015 6.8628 23 8 1.4171 1.0224 7.9742 24 6 2.0326 0.1848 5.8340 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.7088 1.1608 -3.4845 29 1 2.2490 -1.6315 1.1529 30 1 1.5089 -2.5148 3.2011 31 1 1.9990 -2.3084 4.9000 32 1 0.6793 -1.3212 4.2284 33 1 4.7135 -0.6334 2.9804 34 1 4.3553 -1.9068 4.1711 35 1 3.8647 -2.1132 2.4723 36 1 4.4055 1.3180 3.7223 37 1 4.6905 2.9522 5.5404 38 1 3.2825 2.8129 7.5548 39 1 1.7874 0.4684 8.6750 40 1 1.2867 -0.5920 5.9152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543278543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:29 Heat of formation + Delta-G solvation = -66.455585 kcal Electronic energy + Delta-G solvation = -21754.020246 eV Core-core repulsion = 18533.520174 eV Total energy + Delta-G solvation = -3220.500072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36868 -38.85975 -36.84467 -34.87373 -34.63846 -32.30310 -30.33843 -29.50216 -28.49870 -27.24495 -25.25358 -23.95933 -22.30641 -22.11964 -20.32293 -19.07243 -18.13726 -16.79272 -16.54541 -15.73588 -15.48265 -15.40099 -14.89623 -14.41832 -14.18154 -13.83733 -13.75100 -13.24353 -12.70166 -12.39824 -12.29944 -12.11741 -12.03148 -11.84397 -11.77229 -11.62727 -11.26189 -11.09058 -10.96904 -10.83986 -10.65691 -10.35757 -10.28714 -10.23574 -9.03497 -8.98588 -8.69303 -8.54968 -8.44741 -7.87874 -6.12174 -4.21587 1.35077 1.41987 3.23121 3.30876 3.33316 3.41183 3.66961 4.06462 4.25699 4.41573 4.61478 4.88672 5.05307 5.13359 5.18670 5.20820 5.38578 5.42031 5.57469 5.63399 5.78080 5.81600 5.89014 5.96404 6.02714 6.17713 6.21618 6.47461 6.51483 6.71349 6.83677 6.88192 6.98716 7.16874 7.48245 7.57643 7.63299 7.70257 7.92663 8.15927 8.68647 8.79161 9.15373 9.46385 10.93765 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032115 B = 0.004024 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.667897 B = 6955.979959 C = 6999.657370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.512 3.488 14 O -0.545 6.545 15 C -0.050 4.050 16 C -0.141 4.141 17 C -0.137 4.137 18 C -0.030 4.030 19 C -0.098 4.098 20 C -0.105 4.105 21 C -0.151 4.151 22 C 0.097 3.903 23 O -0.500 6.500 24 C -0.141 4.141 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.385 0.615 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -4.927 17.066 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.295 3.705 14 O -0.423 6.423 15 C -0.053 4.053 16 C -0.198 4.198 17 C -0.194 4.194 18 C -0.031 4.031 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.169 4.169 22 C 0.053 3.947 23 O -0.309 6.309 24 C -0.160 4.160 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.239 0.761 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.053 -3.579 16.595 17.712 hybrid contribution 0.585 -1.102 -0.668 1.415 sum 5.638 -4.681 15.927 17.532 Atomic orbital electron populations 1.22071 0.98534 0.99040 1.00875 1.18738 0.90993 0.93960 0.80020 0.93448 1.21249 1.32346 1.13173 0.90322 0.92059 1.24889 0.94820 0.94951 0.99052 1.69916 1.35892 1.22501 1.23742 0.86407 0.78604 0.79529 0.82636 1.19738 1.20885 1.20890 1.46496 1.65086 1.13442 1.10357 1.20084 0.78835 0.87325 0.84233 1.90678 1.50696 1.16046 1.84853 1.19825 0.97670 0.94952 0.92868 1.21910 0.98463 0.97475 1.01949 1.21875 0.94698 1.00764 1.02083 1.19229 0.94905 0.95617 0.93346 1.20997 0.98165 0.94210 0.98283 1.20960 0.99317 0.98668 0.93338 1.21332 0.96326 0.99702 0.99584 1.18382 0.92315 0.95703 0.88332 1.84856 1.47260 1.72801 1.26014 1.21364 1.00341 0.99948 0.94299 0.95525 0.96693 0.89198 0.92643 0.78017 0.91425 0.91557 0.91753 0.91778 0.91758 0.91363 0.85935 0.85754 0.85871 0.76061 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.75 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.96 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.71 -14.59 4.90 -54.93 -0.27 -14.86 16 13 C 0.51 10.22 6.32 -10.98 -0.07 10.15 16 14 O -0.54 -13.28 15.21 5.56 0.08 -13.20 16 15 C -0.05 -0.73 0.72 -156.81 -0.11 -0.84 16 16 C -0.14 -1.73 7.11 37.15 0.26 -1.46 16 17 C -0.14 -1.66 8.07 37.16 0.30 -1.36 16 18 C -0.03 -0.46 4.23 -104.64 -0.44 -0.90 16 19 C -0.10 -1.46 8.38 -39.56 -0.33 -1.79 16 20 C -0.10 -1.36 10.04 -39.61 -0.40 -1.76 16 21 C -0.15 -1.90 9.99 -39.43 -0.39 -2.29 16 22 C 0.10 1.28 6.70 -39.22 -0.26 1.01 16 23 O -0.50 -5.69 13.50 -19.44 -0.26 -5.96 16 24 C -0.14 -1.96 8.93 -39.43 -0.35 -2.32 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 6.92 7.45 -40.82 -0.30 6.61 16 30 H 0.07 0.78 7.95 -51.92 -0.41 0.37 16 31 H 0.07 0.65 7.77 -51.93 -0.40 0.24 16 32 H 0.06 0.85 7.25 -51.93 -0.38 0.48 16 33 H 0.06 0.81 7.08 -51.93 -0.37 0.44 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.78 7.28 -51.93 -0.38 0.40 16 36 H 0.12 1.82 7.23 -52.49 -0.38 1.44 16 37 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.38 2.27 9.06 45.56 0.41 2.68 16 40 H 0.13 1.63 5.90 -52.49 -0.31 1.32 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -32.74 329.35 -6.79 -39.52 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.88 Total: 9.33 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.03 Total: -11.00 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.36 Total: -39.19 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.18 Total: -19.15 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.74 -6.79 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543278543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.931 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds