Wall clock time and date at job start Thu Apr 9 2020 13:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46865 * 2 1 4 4 C 1.50700 * 109.47551 * 239.99390 * 2 1 3 5 5 H 1.08000 * 119.99799 * 239.99920 * 4 2 1 6 6 C 1.37870 * 119.99759 * 59.99822 * 4 2 1 7 7 N 1.31511 * 120.00232 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99891 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46916 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47000 * 119.99839 * 8 6 4 11 11 H 1.48496 * 109.46692 * 239.99751 * 8 6 4 12 12 N 1.46504 * 109.47030 * 119.99231 * 2 1 3 13 13 C 1.34784 * 119.99775 * 274.99836 * 12 2 1 14 14 O 1.21273 * 120.00030 * 0.28213 * 13 12 2 15 15 C 1.50704 * 119.99558 * 179.97438 * 13 12 2 16 16 C 1.52993 * 109.47627 * 294.63508 * 15 13 12 17 17 C 1.53002 * 109.46868 * 54.64017 * 15 13 12 18 18 C 1.50698 * 109.46858 * 174.63438 * 15 13 12 19 19 C 1.38292 * 119.97291 * 294.14905 * 18 15 13 20 20 C 1.38244 * 120.10905 * 179.72788 * 19 18 15 21 21 C 1.38163 * 120.05862 * 0.54075 * 20 19 18 22 22 C 1.38712 * 119.94101 * 359.73083 * 21 20 19 23 23 O 1.35906 * 120.05566 * 179.97438 * 22 21 20 24 24 C 1.38125 * 119.97378 * 114.41819 * 18 15 13 25 25 H 1.09006 * 109.46698 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47308 * 300.00632 * 1 2 3 27 27 H 1.08993 * 109.47067 * 60.00801 * 1 2 3 28 28 H 0.97000 * 120.00088 * 179.97438 * 7 6 4 29 29 H 0.96991 * 120.00207 * 95.00292 * 12 2 1 30 30 H 1.09010 * 109.46886 * 59.99759 * 16 15 13 31 31 H 1.08993 * 109.47363 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.47319 * 300.00470 * 16 15 13 33 33 H 1.09001 * 109.47229 * 59.99503 * 17 15 13 34 34 H 1.09003 * 109.46790 * 179.97438 * 17 15 13 35 35 H 1.08997 * 109.46811 * 299.99366 * 17 15 13 36 36 H 1.07999 * 119.94176 * 359.97438 * 19 18 15 37 37 H 1.08008 * 119.97081 * 180.25344 * 20 19 18 38 38 H 1.07995 * 120.02951 * 179.70824 * 21 20 19 39 39 H 0.96702 * 113.99594 * 270.02339 * 23 22 21 40 40 H 1.07999 * 120.02406 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9428 0.8293 -2.6034 8 14 2.3216 -1.1208 -4.0078 9 1 3.1467 -2.2873 -3.6034 10 1 1.1663 -1.5872 -4.8158 11 1 3.1467 -0.1878 -4.8163 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0179 2.3572 14 8 1.8538 1.1576 2.4127 15 6 2.6488 -0.7283 3.5879 16 6 1.6363 -1.7949 4.0097 17 6 3.9921 -1.3933 3.2808 18 6 2.8250 0.2669 4.7057 19 6 3.7836 1.2584 4.6033 20 6 3.9438 2.1763 5.6245 21 6 3.1537 2.0984 6.7552 22 6 2.1953 1.1015 6.8628 23 8 1.4171 1.0224 7.9742 24 6 2.0326 0.1848 5.8340 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.7088 1.1608 -3.4845 29 1 2.2490 -1.6315 1.1529 30 1 1.5089 -2.5148 3.2011 31 1 1.9990 -2.3084 4.9000 32 1 0.6793 -1.3212 4.2284 33 1 4.7135 -0.6334 2.9804 34 1 4.3553 -1.9068 4.1711 35 1 3.8647 -2.1132 2.4723 36 1 4.4055 1.3180 3.7223 37 1 4.6905 2.9522 5.5404 38 1 3.2825 2.8129 7.5548 39 1 1.7874 0.4684 8.6750 40 1 1.2867 -0.5920 5.9152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543278543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:28 Heat of formation + Delta-G solvation = -89.436853 kcal Electronic energy + Delta-G solvation = -21755.016788 eV Core-core repulsion = 18533.520174 eV Total energy + Delta-G solvation = -3221.496615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61195 -40.14259 -37.96125 -36.64896 -35.93390 -34.21307 -31.49278 -30.79612 -30.04538 -28.21101 -27.34775 -25.18101 -23.72179 -23.19887 -21.95880 -20.60960 -19.37004 -18.30509 -17.58981 -17.34353 -17.14363 -16.58154 -16.29767 -15.74402 -15.67358 -15.03321 -14.88429 -14.71056 -14.42954 -13.94490 -13.57299 -13.32299 -13.15233 -13.02323 -12.94181 -12.89012 -12.85085 -12.79776 -12.71994 -12.29580 -12.24307 -12.11139 -11.84634 -11.31345 -11.09246 -10.65728 -10.49976 -9.79141 -9.72045 -9.49193 -8.17416 -6.35225 0.32169 0.39484 1.44510 1.45398 1.57595 1.84358 2.34264 2.53606 2.86601 3.13227 3.26934 3.53680 3.83214 3.98339 4.10775 4.16171 4.22853 4.34585 4.60785 4.72227 4.74134 4.80493 4.83895 4.88653 4.90612 5.01014 5.05931 5.09256 5.19546 5.24792 5.43651 5.46851 5.48459 5.61867 5.66051 5.69107 5.90066 5.93698 6.09775 6.73300 6.90759 6.98525 7.32844 7.57918 8.89151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032115 B = 0.004024 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.667897 B = 6955.979959 C = 6999.657370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.700 5.700 13 C 0.507 3.493 14 O -0.595 6.595 15 C -0.039 4.039 16 C -0.139 4.139 17 C -0.134 4.134 18 C -0.048 4.048 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.154 4.154 22 C 0.097 3.903 23 O -0.507 6.507 24 C -0.152 4.152 25 H 0.041 0.959 26 H 0.007 0.993 27 H 0.065 0.935 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.410 0.590 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -7.018 18.339 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.582 4.582 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.181 1.181 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.349 5.349 13 C 0.294 3.706 14 O -0.476 6.476 15 C -0.042 4.042 16 C -0.196 4.196 17 C -0.191 4.191 18 C -0.048 4.048 19 C -0.141 4.141 20 C -0.126 4.126 21 C -0.172 4.172 22 C 0.053 3.947 23 O -0.321 6.321 24 C -0.170 4.170 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.269 0.731 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.929 -5.725 17.910 19.716 hybrid contribution 0.299 -0.369 -0.957 1.069 sum 6.228 -6.094 16.953 19.061 Atomic orbital electron populations 1.21889 0.98529 0.99416 0.99303 1.18320 0.90954 0.91831 0.82128 0.98717 1.21568 1.32445 1.13507 0.90664 0.90670 1.25819 0.94862 0.95564 1.02401 1.70070 1.37103 1.24082 1.24502 0.85282 0.78077 0.78556 0.78329 1.18112 1.20502 1.21071 1.46227 1.65126 1.14087 1.09480 1.21098 0.77359 0.86870 0.85309 1.90647 1.52666 1.18545 1.85766 1.19787 0.99424 0.95192 0.89827 1.21954 0.97115 0.96770 1.03730 1.21903 0.92890 1.00552 1.03786 1.19343 0.95530 0.96079 0.93877 1.21095 0.98862 0.95401 0.98702 1.21232 0.99794 0.98578 0.92979 1.21619 0.95799 0.99885 0.99908 1.18504 0.92046 0.95395 0.88758 1.84792 1.47437 1.73604 1.26233 1.21541 1.00437 1.00777 0.94261 0.93953 0.97362 0.91601 0.92614 0.76084 0.90550 0.88205 0.93075 0.92913 0.88761 0.90537 0.87125 0.83742 0.83570 0.73141 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 14.26 2.56 44.24 0.11 14.37 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 4 C -0.54 -28.74 8.73 25.60 0.22 -28.52 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.22 11.32 21.44 0.24 -52.98 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.89 16 9 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.70 -29.17 4.90 -446.08 -2.19 -31.36 16 13 C 0.51 20.62 6.32 87.66 0.55 21.17 16 14 O -0.60 -30.33 15.21 -3.01 -0.05 -30.38 16 15 C -0.04 -1.11 0.72 -53.67 -0.04 -1.15 16 16 C -0.14 -3.09 7.11 71.98 0.51 -2.58 16 17 C -0.13 -3.02 8.07 71.98 0.58 -2.44 16 18 C -0.05 -1.40 4.23 -19.88 -0.08 -1.49 16 19 C -0.12 -3.65 8.38 22.28 0.19 -3.47 16 20 C -0.11 -2.72 10.04 22.25 0.22 -2.50 16 21 C -0.15 -3.59 9.99 22.37 0.22 -3.37 16 22 C 0.10 2.39 6.70 22.51 0.15 2.54 16 23 O -0.51 -10.29 13.50 -92.49 -1.25 -11.54 16 24 C -0.15 -4.01 8.93 22.36 0.20 -3.81 16 25 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.40 14.01 7.45 -92.71 -0.69 13.32 16 30 H 0.08 1.56 7.95 -2.38 -0.02 1.55 16 31 H 0.10 1.58 7.77 -2.39 -0.02 1.56 16 32 H 0.05 1.28 7.25 -2.39 -0.02 1.26 16 33 H 0.05 1.30 7.08 -2.39 -0.02 1.29 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.58 7.28 -2.39 -0.02 1.56 16 36 H 0.11 3.44 7.23 -2.91 -0.02 3.42 16 37 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.41 3.62 9.06 -74.06 -0.67 2.95 16 40 H 0.14 3.28 5.90 -2.91 -0.02 3.27 16 Total: -1.00 -73.06 329.35 2.45 -70.61 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.30 Total: 28.03 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 3.96 Total: -16.27 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.94 Total: -84.34 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.29 Total: -41.92 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -73.06 2.45 -70.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543278543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.828 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds