Wall clock time and date at job start Thu Apr 9 2020 13:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38167 * 119.55779 * 2 1 4 4 C 1.39793 * 119.00500 * 180.02562 * 3 2 1 5 5 C 1.48151 * 120.92602 * 180.02562 * 4 3 2 6 6 O 1.21519 * 119.99564 * 322.12389 * 5 4 3 7 7 N 1.34769 * 120.00023 * 142.12147 * 5 4 3 8 8 C 1.46504 * 120.00363 * 4.81480 * 7 5 4 9 9 C 1.46505 * 120.00009 * 184.80825 * 7 5 4 10 10 H 1.09002 * 109.46876 * 0.02562 * 9 7 5 11 11 C 1.53008 * 109.47201 * 240.00527 * 9 7 5 12 12 C 1.52995 * 109.47155 * 120.00126 * 9 7 5 13 13 N 1.46493 * 109.47510 * 305.00261 * 12 9 7 14 14 C 1.36937 * 120.00301 * 179.97438 * 13 12 9 15 15 H 1.07993 * 119.99741 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99737 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99555 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47377 * 89.99850 * 18 16 14 20 20 H 1.48503 * 109.47036 * 209.99426 * 18 16 14 21 21 H 1.48499 * 109.47095 * 329.99624 * 18 16 14 22 22 C 1.39840 * 118.15355 * 0.02562 * 4 3 2 23 23 C 1.38126 * 119.00234 * 0.02562 * 22 4 3 24 24 N 1.31805 * 119.54871 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47479 * 269.98504 * 1 2 3 26 26 H 1.09000 * 109.46837 * 29.98109 * 1 2 3 27 27 H 1.09001 * 109.47627 * 149.97958 * 1 2 3 28 28 H 1.08007 * 120.49377 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.46909 * 84.78029 * 8 7 5 30 30 H 1.08991 * 109.46835 * 204.78114 * 8 7 5 31 31 H 1.08998 * 109.46743 * 324.78536 * 8 7 5 32 32 H 1.08992 * 109.46822 * 179.97438 * 11 9 7 33 33 H 1.08995 * 109.46612 * 299.99891 * 11 9 7 34 34 H 1.09001 * 109.47049 * 60.00065 * 11 9 7 35 35 H 1.09003 * 109.47060 * 65.00147 * 12 9 7 36 36 H 1.09001 * 109.47350 * 184.99806 * 12 9 7 37 37 H 0.97009 * 119.99623 * 0.02562 * 13 12 9 38 38 H 0.97001 * 119.99753 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.49921 * 180.02562 * 22 4 3 40 40 H 1.08000 * 119.55153 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2019 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3600 2.4518 0.0000 6 8 3.9686 3.4042 -0.6454 7 7 5.4978 2.5450 0.7162 8 6 6.0260 1.3670 1.4088 9 6 6.2067 3.8243 0.8021 10 1 5.6674 4.5777 0.2279 11 6 7.6187 3.6641 0.2349 12 6 6.2916 4.2630 2.2653 13 7 4.9457 4.3011 2.8427 14 6 4.7718 4.6682 4.1504 15 1 5.6267 4.9301 4.7560 16 6 3.4965 4.7037 4.6975 17 7 2.4545 4.3849 3.9592 18 14 3.2591 5.2052 6.4812 19 1 3.0647 6.6753 6.5605 20 1 2.0647 4.5174 7.0341 21 1 4.4593 4.8215 7.2672 22 6 4.2343 -0.0509 -0.0016 23 6 3.4740 -1.2041 -0.0026 24 7 2.1570 -1.1466 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6494 2.1377 -0.0004 29 1 6.6289 0.7788 0.7171 30 1 6.6435 1.6858 2.2485 31 1 5.1985 0.7601 1.7761 32 1 8.1458 4.6159 0.2984 33 1 8.1576 2.9108 0.8094 34 1 7.5582 3.3515 -0.8076 35 1 6.9058 3.5551 2.8219 36 1 6.7393 5.2552 2.3218 37 1 4.1778 4.0654 2.2987 38 1 1.5633 4.4101 4.3415 39 1 5.3129 -0.1055 -0.0017 40 1 3.9652 -2.1659 -0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715369284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:22 Heat of formation + Delta-G solvation = 21.538740 kcal Electronic energy + Delta-G solvation = -21963.596071 eV Core-core repulsion = 18779.204471 eV Total energy + Delta-G solvation = -3184.391601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65856 -39.15344 -36.44000 -34.26660 -33.21937 -32.36942 -31.39579 -30.03278 -27.77904 -26.69362 -25.71431 -24.54901 -22.74446 -22.49217 -20.77403 -19.05521 -17.34136 -17.10787 -16.52131 -16.02558 -15.76130 -15.02320 -14.89795 -14.53464 -14.31434 -13.66551 -13.48704 -13.33101 -13.23413 -12.88364 -12.54191 -12.32889 -12.28672 -12.21290 -12.09878 -11.93189 -11.52128 -11.38859 -10.87595 -10.77988 -10.52467 -10.07344 -10.00935 -9.72967 -9.68566 -9.25391 -8.89131 -8.86824 -8.36162 -6.92593 -5.75560 -3.05034 0.94911 1.16493 2.93949 3.22860 3.42581 3.47336 3.49176 3.88049 4.30985 4.48667 4.59052 4.79015 4.99552 5.11598 5.17754 5.33126 5.35427 5.44817 5.49936 5.52336 5.57906 5.63458 5.66397 5.80646 5.87271 5.95791 6.01606 6.05008 6.08166 6.14036 6.19303 6.32579 6.45754 6.66942 6.69102 6.91359 7.59818 7.68392 7.98357 8.37463 8.41887 9.53413 10.11101 10.46236 11.46627 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006429 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.951104 B = 4354.020370 C = 5737.874074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.124 3.876 3 C -0.110 4.110 4 C -0.068 4.068 5 C 0.562 3.438 6 O -0.530 6.530 7 N -0.587 5.587 8 C 0.076 3.924 9 C 0.125 3.875 10 H 0.101 0.899 11 C -0.154 4.154 12 C 0.143 3.857 13 N -0.728 5.728 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.160 4.160 23 C 0.094 3.906 24 N -0.477 5.477 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.021 0.979 36 H 0.030 0.970 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.146 0.854 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -10.552 -9.285 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.014 4.014 3 C -0.130 4.130 4 C -0.079 4.079 5 C 0.350 3.650 6 O -0.407 6.407 7 N -0.318 5.318 8 C -0.067 4.067 9 C 0.022 3.978 10 H 0.120 0.880 11 C -0.213 4.213 12 C 0.014 3.986 13 N -0.373 5.373 14 C -0.373 4.373 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.577 5.577 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.180 4.180 23 C -0.063 4.063 24 N -0.188 5.188 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.163 0.837 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.672 -10.742 -9.446 15.048 hybrid contribution 0.191 0.961 1.069 1.450 sum 4.862 -9.781 -8.378 13.766 Atomic orbital electron populations 1.20720 0.88424 1.03384 1.03489 1.21242 0.97234 0.87772 0.95116 1.22106 0.93206 1.00194 0.97509 1.20316 0.94507 0.93803 0.99311 1.18177 0.80354 0.86999 0.79475 1.90771 1.68579 1.38544 1.42791 1.47547 1.24014 1.11186 1.49103 1.22055 0.99909 0.87743 0.97023 1.21468 0.92551 0.85158 0.98620 0.88048 1.22052 0.95993 1.02472 1.00746 1.21020 0.89855 0.97749 0.89933 1.42291 1.01971 1.82040 1.10949 1.19198 0.92498 1.37984 0.87608 0.91251 1.24747 0.95566 1.02425 0.98100 1.69682 0.97902 1.54699 1.35412 0.86209 0.77140 0.78112 0.84816 1.21707 1.21809 1.20820 1.22624 1.02101 0.92436 1.00819 1.22628 0.89266 0.98133 0.96251 1.67347 1.10296 1.29510 1.11629 0.90048 0.90452 0.90548 0.83662 0.92907 0.90154 0.90748 0.91254 0.92328 0.92581 0.96098 0.95202 0.78099 0.93559 0.83690 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.17 36.00 0.37 -0.83 16 2 C 0.12 1.82 6.78 -82.63 -0.56 1.26 16 3 C -0.11 -1.81 9.38 -39.03 -0.37 -2.18 16 4 C -0.07 -1.12 5.29 -104.65 -0.55 -1.68 16 5 C 0.56 10.52 7.12 -12.19 -0.09 10.44 16 6 O -0.53 -11.63 16.27 5.35 0.09 -11.54 16 7 N -0.59 -9.78 2.24 -174.93 -0.39 -10.18 16 8 C 0.08 1.01 7.90 59.85 0.47 1.48 16 9 C 0.12 2.12 2.79 -67.93 -0.19 1.93 16 10 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 11 C -0.15 -1.92 9.20 37.16 0.34 -1.58 16 12 C 0.14 2.85 5.52 -4.05 -0.02 2.82 16 13 N -0.73 -18.72 5.43 -59.92 -0.33 -19.05 16 14 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.16 -2.05 7.68 -39.02 -0.30 -2.35 16 23 C 0.09 1.16 11.17 -17.59 -0.20 0.96 16 24 N -0.48 -6.89 10.25 -9.52 -0.10 -6.99 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.15 2.49 8.06 -52.48 -0.42 2.06 16 29 H 0.05 0.52 6.88 -51.93 -0.36 0.16 16 30 H 0.08 1.10 6.53 -51.93 -0.34 0.76 16 31 H 0.07 1.04 5.83 -51.93 -0.30 0.74 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.40 6.86 -51.93 -0.36 0.05 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.38 10.77 7.06 -40.82 -0.29 10.48 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.15 1.46 5.28 -52.49 -0.28 1.19 16 40 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -34.30 330.69 -6.99 -41.29 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.60 Total: 8.79 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.34 Total: 2.88 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.09 Total: -63.97 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.30 -6.99 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715369284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.828 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds