Wall clock time and date at job start Thu Apr 9 2020 13:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38167 * 119.55779 * 2 1 4 4 C 1.39793 * 119.00500 * 180.02562 * 3 2 1 5 5 C 1.48151 * 120.92602 * 180.02562 * 4 3 2 6 6 O 1.21519 * 119.99564 * 322.12389 * 5 4 3 7 7 N 1.34769 * 120.00023 * 142.12147 * 5 4 3 8 8 C 1.46504 * 120.00363 * 4.81480 * 7 5 4 9 9 C 1.46505 * 120.00009 * 184.80825 * 7 5 4 10 10 H 1.09002 * 109.46876 * 0.02562 * 9 7 5 11 11 C 1.53008 * 109.47201 * 240.00527 * 9 7 5 12 12 C 1.52995 * 109.47155 * 120.00126 * 9 7 5 13 13 N 1.46493 * 109.47510 * 305.00261 * 12 9 7 14 14 C 1.36937 * 120.00301 * 179.97438 * 13 12 9 15 15 H 1.07993 * 119.99741 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99737 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99555 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47377 * 89.99850 * 18 16 14 20 20 H 1.48503 * 109.47036 * 209.99426 * 18 16 14 21 21 H 1.48499 * 109.47095 * 329.99624 * 18 16 14 22 22 C 1.39840 * 118.15355 * 0.02562 * 4 3 2 23 23 C 1.38126 * 119.00234 * 0.02562 * 22 4 3 24 24 N 1.31805 * 119.54871 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47479 * 269.98504 * 1 2 3 26 26 H 1.09000 * 109.46837 * 29.98109 * 1 2 3 27 27 H 1.09001 * 109.47627 * 149.97958 * 1 2 3 28 28 H 1.08007 * 120.49377 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.46909 * 84.78029 * 8 7 5 30 30 H 1.08991 * 109.46835 * 204.78114 * 8 7 5 31 31 H 1.08998 * 109.46743 * 324.78536 * 8 7 5 32 32 H 1.08992 * 109.46822 * 179.97438 * 11 9 7 33 33 H 1.08995 * 109.46612 * 299.99891 * 11 9 7 34 34 H 1.09001 * 109.47049 * 60.00065 * 11 9 7 35 35 H 1.09003 * 109.47060 * 65.00147 * 12 9 7 36 36 H 1.09001 * 109.47350 * 184.99806 * 12 9 7 37 37 H 0.97009 * 119.99623 * 0.02562 * 13 12 9 38 38 H 0.97001 * 119.99753 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.49921 * 180.02562 * 22 4 3 40 40 H 1.08000 * 119.55153 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2019 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3600 2.4518 0.0000 6 8 3.9686 3.4042 -0.6454 7 7 5.4978 2.5450 0.7162 8 6 6.0260 1.3670 1.4088 9 6 6.2067 3.8243 0.8021 10 1 5.6674 4.5777 0.2279 11 6 7.6187 3.6641 0.2349 12 6 6.2916 4.2630 2.2653 13 7 4.9457 4.3011 2.8427 14 6 4.7718 4.6682 4.1504 15 1 5.6267 4.9301 4.7560 16 6 3.4965 4.7037 4.6975 17 7 2.4545 4.3849 3.9592 18 14 3.2591 5.2052 6.4812 19 1 3.0647 6.6753 6.5605 20 1 2.0647 4.5174 7.0341 21 1 4.4593 4.8215 7.2672 22 6 4.2343 -0.0509 -0.0016 23 6 3.4740 -1.2041 -0.0026 24 7 2.1570 -1.1466 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6494 2.1377 -0.0004 29 1 6.6289 0.7788 0.7171 30 1 6.6435 1.6858 2.2485 31 1 5.1985 0.7601 1.7761 32 1 8.1458 4.6159 0.2984 33 1 8.1576 2.9108 0.8094 34 1 7.5582 3.3515 -0.8076 35 1 6.9058 3.5551 2.8219 36 1 6.7393 5.2552 2.3218 37 1 4.1778 4.0654 2.2987 38 1 1.5633 4.4101 4.3415 39 1 5.3129 -0.1055 -0.0017 40 1 3.9652 -2.1659 -0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715369284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:21 Heat of formation + Delta-G solvation = -2.004888 kcal Electronic energy + Delta-G solvation = -21964.617000 eV Core-core repulsion = 18779.204471 eV Total energy + Delta-G solvation = -3185.412529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87650 -40.41285 -37.94742 -35.99571 -34.60837 -33.49450 -32.98476 -31.64947 -28.82921 -27.83058 -27.42709 -25.83556 -24.46204 -23.72638 -22.11433 -20.40841 -19.15377 -18.58910 -17.77892 -17.26047 -17.01237 -16.64407 -16.34390 -15.87491 -15.44045 -15.32883 -15.14774 -14.76333 -14.45088 -14.13575 -13.85290 -13.69725 -13.50461 -13.28939 -13.18894 -13.06684 -13.01714 -12.82108 -12.54011 -12.47101 -12.17090 -11.84787 -11.76780 -11.38322 -10.98021 -10.88516 -10.44396 -9.93064 -9.67959 -9.02795 -7.95911 -5.26096 -0.23162 0.07647 1.43713 1.46080 1.54247 1.56817 1.97366 2.53157 2.76146 3.26343 3.35640 3.37189 3.76055 3.81920 3.92859 3.99623 4.07084 4.21226 4.26675 4.39963 4.43622 4.54887 4.65329 4.72076 4.74357 4.75781 4.83473 4.91430 4.95945 4.96926 5.04765 5.12264 5.13717 5.29574 5.45680 5.56385 5.65260 6.23321 6.28163 6.90639 6.99666 7.29906 8.05459 8.28428 9.27101 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006429 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.951104 B = 4354.020370 C = 5737.874074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.118 3.882 3 C -0.141 4.141 4 C -0.090 4.090 5 C 0.552 3.448 6 O -0.580 6.580 7 N -0.584 5.584 8 C 0.069 3.931 9 C 0.128 3.872 10 H 0.067 0.933 11 C -0.141 4.141 12 C 0.140 3.860 13 N -0.743 5.743 14 C -0.244 4.244 15 H 0.080 0.920 16 C -0.077 4.077 17 N -0.969 5.969 18 Si 0.974 3.026 19 H -0.289 1.289 20 H -0.297 1.297 21 H -0.265 1.265 22 C -0.146 4.146 23 C 0.102 3.898 24 N -0.488 5.488 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.034 0.966 37 H 0.369 0.631 38 H 0.249 0.751 39 H 0.179 0.821 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.781 -12.640 -8.747 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.162 4.162 4 C -0.101 4.101 5 C 0.341 3.659 6 O -0.461 6.461 7 N -0.315 5.315 8 C -0.073 4.073 9 C 0.024 3.976 10 H 0.085 0.915 11 C -0.199 4.199 12 C 0.013 3.987 13 N -0.386 5.386 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.269 4.269 17 N -0.619 5.619 18 Si 0.803 3.197 19 H -0.217 1.217 20 H -0.224 1.224 21 H -0.189 1.189 22 C -0.166 4.166 23 C -0.055 4.055 24 N -0.199 5.199 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.139 0.861 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.200 0.800 38 H 0.057 0.943 39 H 0.196 0.804 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.221 -12.842 -8.889 17.207 hybrid contribution -0.478 1.591 0.884 1.882 sum 6.743 -11.251 -8.005 15.367 Atomic orbital electron populations 1.20782 0.86776 1.04482 1.03847 1.21539 0.98502 0.87210 0.94622 1.22088 0.93845 1.00170 1.00047 1.20348 0.94394 0.94313 1.01068 1.18654 0.80705 0.87346 0.79198 1.90726 1.69807 1.40412 1.45155 1.47684 1.23391 1.12001 1.48379 1.22336 1.00067 0.86825 0.98022 1.21392 0.94989 0.84842 0.96332 0.91468 1.21967 0.92665 1.04075 1.01192 1.21248 0.87217 0.98423 0.91774 1.42527 1.03751 1.81962 1.10320 1.19647 0.92771 1.36417 0.88695 0.90209 1.25610 0.95461 1.03469 1.02380 1.69870 0.98063 1.56749 1.37248 0.85128 0.77211 0.77337 0.79994 1.21672 1.22420 1.18943 1.22939 1.03700 0.90850 0.99075 1.23415 0.88619 0.99733 0.93760 1.67468 1.11554 1.28900 1.11975 0.89939 0.89870 0.88939 0.86125 0.88108 0.90173 0.91497 0.89970 0.89979 0.91726 0.94088 0.94867 0.79965 0.94251 0.80395 0.77935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 10.17 71.24 0.72 -1.67 16 2 C 0.12 3.51 6.78 42.54 0.29 3.80 16 3 C -0.14 -4.93 9.38 22.63 0.21 -4.72 16 4 C -0.09 -3.01 5.29 -19.88 -0.11 -3.12 16 5 C 0.55 21.35 7.12 86.88 0.62 21.96 16 6 O -0.58 -27.26 16.27 -3.78 -0.06 -27.32 16 7 N -0.58 -19.12 2.24 -825.66 -1.85 -20.97 16 8 C 0.07 1.64 7.90 127.77 1.01 2.65 16 9 C 0.13 4.27 2.79 44.99 0.13 4.40 16 10 H 0.07 2.72 6.91 -2.39 -0.02 2.70 16 11 C -0.14 -3.11 9.20 71.98 0.66 -2.45 16 12 C 0.14 5.47 5.52 86.38 0.48 5.95 16 13 N -0.74 -38.75 5.43 -343.47 -1.87 -40.62 16 14 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 15 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 16 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 17 N -0.97 -61.35 13.06 21.65 0.28 -61.06 16 18 Si 0.97 46.85 29.55 68.60 2.03 48.87 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 C -0.15 -3.41 7.68 22.63 0.17 -3.24 16 23 C 0.10 2.20 11.17 84.67 0.95 3.14 16 24 N -0.49 -13.33 10.25 -184.04 -1.89 -15.21 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 29 H 0.10 1.46 6.88 -2.39 -0.02 1.44 16 30 H 0.08 1.93 6.53 -2.39 -0.02 1.92 16 31 H 0.07 1.73 5.83 -2.39 -0.01 1.71 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.37 21.47 7.06 -92.70 -0.65 20.81 16 38 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.18 2.82 5.28 -2.91 -0.02 2.80 16 40 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -78.13 330.69 3.48 -74.65 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.40 Total: 31.88 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 6.44 Total: 9.77 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -5.32 Total: -137.86 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -78.13 3.48 -74.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715369284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.649 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds