Wall clock time and date at job start Thu Apr 9 2020 13:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38348 * 119.46272 * 2 1 4 4 C 1.38356 * 119.30720 * 179.97438 * 3 2 1 5 5 C 1.40030 * 118.28371 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.55471 * 180.02562 * 5 4 3 7 7 O 1.21550 * 120.00169 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99444 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99595 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46850 * 35.00294 * 9 8 6 11 11 C 1.52995 * 109.47135 * 275.00199 * 9 8 6 12 12 C 1.52998 * 109.46837 * 154.99973 * 9 8 6 13 13 H 1.09003 * 109.47082 * 60.00088 * 12 9 8 14 14 C 1.52995 * 109.47443 * 300.00037 * 12 9 8 15 15 N 1.46498 * 109.47009 * 179.97438 * 12 9 8 16 16 C 1.36935 * 120.00239 * 204.99963 * 15 12 9 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 12 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.39520 * 118.88498 * 0.27246 * 5 4 3 25 25 N 1.31697 * 120.56459 * 359.40847 * 24 5 4 26 26 H 1.08999 * 109.46544 * 90.00493 * 1 2 3 27 27 H 1.09004 * 109.47296 * 209.99695 * 1 2 3 28 28 H 1.08997 * 109.46925 * 330.00719 * 1 2 3 29 29 H 1.08002 * 120.34575 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.85626 * 180.02562 * 4 3 2 31 31 H 0.96995 * 120.00768 * 0.02562 * 8 6 5 32 32 H 1.08995 * 109.47629 * 60.00262 * 11 9 8 33 33 H 1.09003 * 109.46933 * 179.97438 * 11 9 8 34 34 H 1.08996 * 109.47329 * 299.99802 * 11 9 8 35 35 H 1.09004 * 109.47411 * 179.97438 * 14 12 9 36 36 H 1.08996 * 109.47329 * 300.00343 * 14 12 9 37 37 H 1.09003 * 109.46933 * 60.00266 * 14 12 9 38 38 H 0.97004 * 119.99747 * 25.00702 * 15 12 9 39 39 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 40 40 H 1.07999 * 119.72001 * 179.73225 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.2312 -0.0341 0.0005 6 6 5.7083 -0.0967 0.0016 7 8 6.3602 0.9293 0.0021 8 7 6.3321 -1.2914 0.0021 9 6 7.7958 -1.3535 0.0027 10 1 8.1942 -0.5278 0.5921 11 6 8.3112 -1.2498 -1.4341 12 6 8.2497 -2.6811 0.6128 13 1 7.8512 -3.5069 0.0233 14 6 7.7343 -2.7849 2.0496 15 7 9.7133 -2.7435 0.6128 16 6 10.3470 -3.9574 0.6132 17 1 9.7677 -4.8690 0.6131 18 6 11.7338 -4.0166 0.6138 19 7 12.4398 -2.9057 0.6084 20 14 12.5982 -5.6725 0.6136 21 1 12.8326 -6.1086 2.0137 22 1 11.7496 -6.6738 -0.0811 23 1 13.8994 -5.5518 -0.0917 24 6 3.4716 -1.2044 -0.0059 25 7 2.1558 -1.1488 0.0000 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6444 2.1381 0.0004 30 1 4.1275 2.1264 0.0010 31 1 5.8120 -2.1102 0.0014 32 1 7.9879 -0.3039 -1.8687 33 1 9.4003 -1.2955 -1.4336 34 1 7.9128 -2.0755 -2.0235 35 1 8.0573 -3.7310 2.4841 36 1 8.1327 -1.9591 2.6390 37 1 6.6453 -2.7387 2.0491 38 1 10.2336 -1.9248 0.6126 39 1 11.9910 -2.0457 0.6081 40 1 3.9669 -2.1641 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725079359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:36 Heat of formation + Delta-G solvation = -20.396056 kcal Electronic energy + Delta-G solvation = -21031.501808 eV Core-core repulsion = 17845.291778 eV Total energy + Delta-G solvation = -3186.210030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78343 -40.42780 -38.42320 -35.94884 -34.36806 -33.59846 -33.24328 -31.16255 -30.01516 -28.76704 -25.81746 -25.06649 -24.68695 -23.48834 -21.73197 -21.69825 -19.52186 -19.15232 -17.93654 -17.07086 -16.73209 -16.58767 -16.21972 -15.86655 -15.60306 -15.34090 -15.22639 -14.78742 -14.54267 -14.29099 -14.17742 -13.60416 -13.32558 -13.24031 -13.16698 -13.00037 -12.92218 -12.62303 -12.51782 -12.29064 -11.86204 -11.69325 -11.43574 -11.20429 -11.00065 -10.98506 -10.52842 -10.32132 -9.98576 -9.12979 -8.35511 -5.30669 -0.45120 0.15850 1.60167 1.70610 1.72572 1.84123 1.93192 2.74075 2.75319 3.14474 3.43538 3.59331 3.65525 3.73048 3.76678 3.83434 3.97492 4.08495 4.21692 4.28225 4.47630 4.58704 4.66105 4.71022 4.75535 4.80588 4.83301 4.90882 5.02693 5.05932 5.07378 5.16108 5.19485 5.37484 5.41576 5.57769 5.63960 6.39373 6.51523 6.80699 7.05222 7.10471 7.98899 8.11279 9.16098 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.003243 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.888520 B = 8631.379815 C = 9028.652342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.142 3.858 3 C -0.172 4.172 4 C -0.025 4.025 5 C -0.207 4.207 6 C 0.564 3.436 7 O -0.578 6.578 8 N -0.698 5.698 9 C 0.150 3.850 10 H 0.063 0.937 11 C -0.143 4.143 12 C 0.173 3.827 13 H 0.061 0.939 14 C -0.155 4.155 15 N -0.742 5.742 16 C -0.321 4.321 17 H 0.072 0.928 18 C -0.106 4.106 19 N -0.979 5.979 20 Si 1.129 2.871 21 H -0.288 1.288 22 H -0.270 1.270 23 H -0.297 1.297 24 C 0.141 3.859 25 N -0.507 5.507 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.175 0.825 30 H 0.146 0.854 31 H 0.413 0.587 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.358 0.642 39 H 0.244 0.756 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.372 5.337 -2.003 26.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 C -0.191 4.191 4 C -0.051 4.051 5 C -0.212 4.212 6 C 0.352 3.648 7 O -0.458 6.458 8 N -0.350 5.350 9 C 0.044 3.956 10 H 0.081 0.919 11 C -0.202 4.202 12 C 0.064 3.936 13 H 0.079 0.921 14 C -0.215 4.215 15 N -0.384 5.384 16 C -0.452 4.452 17 H 0.090 0.910 18 C -0.297 4.297 19 N -0.627 5.627 20 Si 0.954 3.046 21 H -0.215 1.215 22 H -0.195 1.195 23 H -0.224 1.224 24 C -0.017 4.017 25 N -0.217 5.217 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.192 0.808 30 H 0.163 0.837 31 H 0.251 0.749 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.190 0.810 39 H 0.054 0.946 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -25.053 4.290 -2.016 25.498 hybrid contribution -0.334 1.625 0.117 1.663 sum -25.387 5.915 -1.898 26.136 Atomic orbital electron populations 1.20909 0.85983 1.04920 1.04497 1.22200 0.99035 0.88062 0.90223 1.22294 0.93533 1.00887 1.02429 1.21920 0.95183 0.97616 0.90377 1.20868 0.92786 0.96854 1.10713 1.18396 0.87647 0.83326 0.75461 1.90759 1.67944 1.35202 1.51915 1.45736 1.06821 1.08476 1.73966 1.20954 0.79488 0.98295 0.96835 0.91916 1.21932 1.01069 1.01342 0.95831 1.20494 0.83869 0.94400 0.94816 0.92079 1.22297 1.00491 1.00668 0.98026 1.42481 1.01241 1.04695 1.89992 1.20348 0.92403 0.86454 1.46031 0.91048 1.27130 0.94441 1.07264 1.00891 1.70958 1.37600 0.97629 1.56513 0.82599 0.74684 0.70643 0.76655 1.21476 1.19516 1.22376 1.23210 0.89492 0.97809 0.91193 1.67646 1.09468 1.30219 1.14393 0.88718 0.90367 0.88019 0.80757 0.83669 0.74938 0.93050 0.93055 0.91609 0.93794 0.94867 0.90743 0.80968 0.94592 0.80616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.16 71.24 0.72 -0.13 16 2 C 0.14 2.17 6.78 42.57 0.29 2.46 16 3 C -0.17 -2.42 9.72 22.32 0.22 -2.20 16 4 C -0.02 -0.49 9.72 22.73 0.22 -0.27 16 5 C -0.21 -4.67 5.89 -19.99 -0.12 -4.79 16 6 C 0.56 16.16 7.75 86.79 0.67 16.83 16 7 O -0.58 -21.18 16.08 -3.87 -0.06 -21.24 16 8 N -0.70 -18.39 4.34 -445.41 -1.93 -20.32 16 9 C 0.15 5.07 2.21 44.99 0.10 5.17 16 10 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 11 C -0.14 -4.96 9.33 71.98 0.67 -4.29 16 12 C 0.17 6.47 2.52 44.99 0.11 6.59 16 13 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 14 C -0.16 -5.31 9.33 71.98 0.67 -4.64 16 15 N -0.74 -36.21 4.43 -322.95 -1.43 -37.64 16 16 C -0.32 -17.44 9.93 84.03 0.83 -16.61 16 17 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 18 C -0.11 -6.10 5.50 84.86 0.47 -5.63 16 19 N -0.98 -61.39 13.70 21.65 0.30 -61.09 16 20 Si 1.13 51.61 29.92 68.60 2.05 53.66 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 24 C 0.14 2.74 10.71 85.02 0.91 3.65 16 25 N -0.51 -9.92 10.25 -182.82 -1.87 -11.79 16 26 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.10 0.35 8.07 -2.39 -0.02 0.33 16 29 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 30 H 0.15 2.86 7.74 -2.91 -0.02 2.84 16 31 H 0.41 8.22 6.46 -92.71 -0.60 7.62 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 2.05 7.44 -2.39 -0.02 2.03 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.97 7.45 -2.39 -0.02 1.95 16 38 H 0.36 18.81 6.41 -92.71 -0.59 18.22 16 39 H 0.24 15.31 6.77 -92.71 -0.63 14.68 16 40 H 0.18 2.55 6.42 -2.91 -0.02 2.53 16 Total: -1.00 -73.18 336.75 2.83 -70.35 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.00 Total: 31.93 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.77 Total: -3.85 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -4.94 Total: -130.85 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.06 Total: -21.24 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -73.18 2.83 -70.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725079359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.952 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds