Wall clock time and date at job start Thu Apr 9 2020 13:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31702 * 119.71193 * 2 1 4 4 C 1.31924 * 121.87372 * 180.32016 * 3 2 1 5 5 C 1.38354 * 121.08365 * 359.64981 * 4 3 2 6 6 C 1.38354 * 119.30092 * 0.02585 * 5 4 3 7 7 C 1.39512 * 119.72000 * 179.68671 * 2 1 3 8 8 C 1.47845 * 120.55634 * 359.97438 * 7 2 1 9 9 O 1.21548 * 120.00265 * 353.49240 * 8 7 2 10 10 N 1.34781 * 119.99928 * 173.49726 * 8 7 2 11 11 C 1.46493 * 120.00084 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47432 * 34.99552 * 11 10 8 13 13 C 1.53007 * 109.47016 * 274.99401 * 11 10 8 14 14 C 1.53003 * 109.47434 * 154.99761 * 11 10 8 15 15 H 1.08997 * 109.46982 * 59.99515 * 14 11 10 16 16 C 1.52997 * 109.46746 * 299.99903 * 14 11 10 17 17 N 1.46495 * 109.47297 * 179.97438 * 14 11 10 18 18 C 1.36935 * 120.00184 * 204.99964 * 17 14 11 19 19 H 1.07999 * 119.99926 * 0.02562 * 18 17 14 20 20 C 1.38816 * 120.00258 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99749 * 0.26893 * 20 18 17 22 22 Si 1.86801 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47107 * 89.99838 * 22 20 18 24 24 H 1.48505 * 109.46703 * 209.99689 * 22 20 18 25 25 H 1.48495 * 109.46932 * 329.99106 * 22 20 18 26 26 H 1.08999 * 109.46737 * 263.74029 * 1 2 3 27 27 H 1.09004 * 109.47280 * 23.73955 * 1 2 3 28 28 H 1.09002 * 109.47147 * 143.74172 * 1 2 3 29 29 H 1.08010 * 119.45893 * 179.67755 * 4 3 2 30 30 H 1.08002 * 120.35156 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.85772 * 179.97438 * 6 5 4 32 32 H 0.97004 * 119.99554 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.46838 * 59.99804 * 13 11 10 34 34 H 1.08997 * 109.47254 * 179.97438 * 13 11 10 35 35 H 1.08997 * 109.47143 * 300.00328 * 13 11 10 36 36 H 1.08997 * 109.47313 * 60.00309 * 16 14 11 37 37 H 1.09005 * 109.46859 * 180.02562 * 16 14 11 38 38 H 1.08997 * 109.47064 * 299.99562 * 16 14 11 39 39 H 0.97009 * 119.99832 * 25.00039 * 17 14 11 40 40 H 0.97001 * 120.00234 * 359.72861 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1439 0.0000 4 6 3.4781 1.1936 -0.0063 5 6 4.2366 0.0366 -0.0059 6 6 3.5988 -1.1912 0.0006 7 6 2.1987 -1.2116 0.0066 8 6 1.4656 -2.4955 0.0142 9 8 0.2561 -2.5041 0.1340 10 7 2.1386 -3.6565 -0.1116 11 6 1.4124 -4.9287 -0.1036 12 1 0.4475 -4.7994 -0.5938 13 6 1.1936 -5.3819 1.3414 14 6 2.2270 -5.9858 -0.8518 15 1 3.1919 -6.1151 -0.3615 16 6 2.4457 -5.5326 -2.2966 17 7 1.5010 -7.2582 -0.8431 18 6 2.1849 -8.4376 -0.9710 19 1 3.2595 -8.4298 -1.0777 20 6 1.4969 -9.6433 -0.9633 21 7 0.1866 -9.6525 -0.8385 22 14 2.4300 -11.2522 -1.1370 23 1 2.8155 -11.7486 0.2084 24 1 1.5644 -12.2566 -1.8059 25 1 3.6515 -11.0305 -1.9517 26 1 -0.3633 -0.1121 1.0215 27 1 -0.3634 0.9407 -0.4137 28 1 -0.3633 -0.8287 -0.6078 29 1 3.9734 2.1535 -0.0113 30 1 5.3152 0.0911 -0.0107 31 1 4.1661 -2.1101 0.0006 32 1 3.1039 -3.6495 -0.2076 33 1 0.6133 -4.6287 1.8745 34 1 0.6529 -6.3282 1.3475 35 1 2.1585 -5.5111 1.8316 36 1 2.9862 -4.5861 -2.3027 37 1 3.0257 -6.2860 -2.8298 38 1 1.4809 -5.4034 -2.7869 39 1 0.5357 -7.2652 -0.7469 40 1 -0.2978 -8.8170 -0.7479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725120738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:44 Heat of formation + Delta-G solvation = 7.652011 kcal Electronic energy + Delta-G solvation = -21374.026493 eV Core-core repulsion = 18189.032718 eV Total energy + Delta-G solvation = -3184.993774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94629 -39.23944 -36.92814 -34.44151 -33.25370 -32.71817 -31.67430 -29.60352 -28.27936 -27.72195 -24.87990 -23.88865 -22.99763 -22.25163 -20.66038 -20.23975 -17.91363 -17.55282 -16.91118 -16.35401 -15.72040 -15.30307 -15.01769 -14.51773 -14.14035 -13.83216 -13.60917 -13.54716 -13.40812 -13.17403 -12.72737 -12.54471 -12.50526 -12.12661 -11.96762 -11.78360 -11.30876 -10.99331 -10.70912 -10.55688 -10.20281 -10.15740 -10.06872 -10.04199 -9.54438 -9.33463 -9.23161 -9.05244 -8.81953 -7.10500 -6.13973 -3.15348 0.42314 0.89219 2.78975 3.10018 3.49021 3.53610 3.59304 3.67662 4.03175 4.39174 4.44958 4.50440 4.64064 4.76378 5.07179 5.22114 5.28084 5.44099 5.47431 5.49251 5.66322 5.66727 5.69534 5.72814 5.88185 5.97037 5.99748 6.12810 6.23672 6.27819 6.35010 6.42133 6.49376 6.66899 6.79165 6.89582 7.49296 7.65114 7.75590 8.19650 8.71030 9.16163 10.02476 10.16600 11.34116 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036512 B = 0.003534 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.693970 B = 7920.190939 C = 8335.080101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.188 3.812 3 N -0.492 5.492 4 C 0.124 3.876 5 C -0.189 4.189 6 C -0.039 4.039 7 C -0.187 4.187 8 C 0.560 3.440 9 O -0.528 6.528 10 N -0.710 5.710 11 C 0.135 3.865 12 H 0.086 0.914 13 C -0.152 4.152 14 C 0.174 3.826 15 H 0.051 0.949 16 C -0.164 4.164 17 N -0.729 5.729 18 C -0.332 4.332 19 H 0.065 0.935 20 C -0.043 4.043 21 N -0.942 5.942 22 Si 1.082 2.918 23 H -0.295 1.295 24 H -0.288 1.288 25 H -0.295 1.295 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.396 0.604 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.368 0.632 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.362 19.880 2.017 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.050 3.950 3 N -0.201 5.201 4 C -0.033 4.033 5 C -0.209 4.209 6 C -0.066 4.066 7 C -0.192 4.192 8 C 0.346 3.654 9 O -0.406 6.406 10 N -0.361 5.361 11 C 0.031 3.969 12 H 0.104 0.896 13 C -0.210 4.210 14 C 0.064 3.936 15 H 0.069 0.931 16 C -0.224 4.224 17 N -0.372 5.372 18 C -0.463 4.463 19 H 0.083 0.917 20 C -0.241 4.241 21 N -0.587 5.587 22 Si 0.913 3.087 23 H -0.223 1.223 24 H -0.214 1.214 25 H -0.222 1.222 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.177 0.823 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.230 0.770 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.202 0.798 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.081 18.918 2.009 20.299 hybrid contribution 1.198 0.934 0.020 1.519 sum 8.278 19.852 2.029 21.604 Atomic orbital electron populations 1.21064 0.87442 1.03893 1.04321 1.21578 0.97717 0.86535 0.89143 1.67679 1.09961 1.28746 1.13759 1.22994 0.89496 0.98769 0.92076 1.22079 1.01822 0.93056 1.03969 1.21807 0.93207 0.99039 0.92528 1.20882 0.94410 0.95308 1.08626 1.17962 0.87139 0.83296 0.76970 1.90736 1.13456 1.86969 1.49438 1.45982 1.10777 1.05907 1.73465 1.21392 0.96692 0.81680 0.97179 0.89570 1.22044 1.01759 1.01892 0.95313 1.20319 0.94663 0.85747 0.92909 0.93085 1.22436 1.01023 0.99088 0.99876 1.42292 1.05648 1.00407 1.88886 1.20013 0.92482 0.85721 1.48072 0.91703 1.25761 0.97097 1.00843 1.00358 1.70846 1.06398 1.28880 1.52561 0.83200 0.73959 0.75355 0.76160 1.22308 1.21382 1.22188 0.89842 0.91333 0.87785 0.82294 0.84125 0.84330 0.76963 0.93200 0.90415 0.92957 0.94555 0.92510 0.93468 0.79785 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.87 36.01 0.32 -1.01 16 2 C 0.19 2.36 6.82 -82.17 -0.56 1.80 16 3 N -0.49 -5.75 10.26 -9.14 -0.09 -5.85 16 4 C 0.12 1.08 11.17 -17.47 -0.20 0.88 16 5 C -0.19 -1.44 10.10 -39.50 -0.40 -1.84 16 6 C -0.04 -0.36 9.63 -38.87 -0.37 -0.73 16 7 C -0.19 -2.25 5.89 -104.82 -0.62 -2.87 16 8 C 0.56 7.96 7.67 -12.33 -0.09 7.86 16 9 O -0.53 -8.95 13.04 5.32 0.07 -8.88 16 10 N -0.71 -9.48 4.34 -54.75 -0.24 -9.71 16 11 C 0.14 2.23 2.21 -67.93 -0.15 2.08 16 12 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 13 C -0.15 -2.56 9.33 37.16 0.35 -2.21 16 14 C 0.17 3.26 2.52 -67.93 -0.17 3.09 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 C -0.16 -2.86 9.33 37.16 0.35 -2.51 16 17 N -0.73 -17.39 4.43 -53.43 -0.24 -17.62 16 18 C -0.33 -8.97 9.93 -15.06 -0.15 -9.12 16 19 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 20 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 21 N -0.94 -28.62 13.70 55.49 0.76 -27.86 16 22 Si 1.08 25.45 29.92 -169.99 -5.09 20.37 16 23 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.40 5.86 -51.93 -0.30 1.10 16 29 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.14 0.93 6.57 -52.49 -0.34 0.59 16 32 H 0.40 4.24 6.53 -40.82 -0.27 3.98 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.48 7.44 -51.93 -0.39 1.10 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.37 9.22 6.42 -40.82 -0.26 8.96 16 40 H 0.26 7.67 6.77 -40.82 -0.28 7.40 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -32.46 331.47 -7.25 -39.71 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.63 Total: 10.74 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.79 Total: -5.89 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.19 Total: -61.04 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.88 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.46 -7.25 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725120738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.362 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds