Wall clock time and date at job start Thu Apr 9 2020 13:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30790 * 125.72416 * 2 1 4 4 C 1.34425 * 109.32172 * 180.02562 * 3 2 1 5 5 C 1.33857 * 107.79759 * 0.02562 * 4 3 2 6 6 N 1.34402 * 125.72415 * 179.97438 * 2 1 3 7 7 C 1.46450 * 128.46127 * 359.91940 * 6 2 1 8 8 C 1.53282 * 108.70496 * 197.39967 * 7 6 2 9 9 C 1.53115 * 109.66667 * 309.15275 * 8 7 6 10 10 H 1.08999 * 109.49612 * 309.94352 * 9 8 7 11 11 C 1.50695 * 109.49718 * 189.87924 * 9 8 7 12 12 O 1.21288 * 120.00355 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00230 * 180.02562 * 11 9 8 14 14 C 1.46492 * 120.00294 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47397 * 179.97438 * 14 13 11 16 16 C 1.50695 * 109.47334 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00366 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00135 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99589 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99819 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47365 * 60.00451 * 20 18 16 22 22 H 1.48505 * 109.46764 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47738 * 300.00095 * 20 18 16 24 24 C 1.50707 * 128.68330 * 179.97438 * 5 4 3 25 25 H 1.08994 * 109.47333 * 270.04872 * 1 2 3 26 26 H 1.09006 * 109.46727 * 30.04867 * 1 2 3 27 27 H 1.09000 * 109.46715 * 150.03998 * 1 2 3 28 28 H 1.08003 * 126.09960 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.63868 * 77.60628 * 7 6 2 30 30 H 1.09003 * 109.55647 * 317.14303 * 7 6 2 31 31 H 1.09002 * 109.43441 * 189.10158 * 8 7 6 32 32 H 1.08996 * 109.42822 * 69.19738 * 8 7 6 33 33 H 0.96999 * 119.99836 * 359.97438 * 13 11 9 34 34 H 1.09006 * 109.47008 * 299.99912 * 14 13 11 35 35 H 1.09004 * 109.47724 * 59.99244 * 14 13 11 36 36 H 1.08999 * 109.46698 * 299.99385 * 15 14 13 37 37 H 1.08995 * 109.46968 * 59.99550 * 15 14 13 38 38 H 0.97002 * 119.99598 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.74608 * 76.08231 * 24 5 4 40 40 H 1.09007 * 109.74554 * 315.36430 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2918 -1.0911 0.0005 7 6 1.8927 -2.5002 0.0027 8 6 3.0922 -3.3502 0.4366 9 6 4.3190 -2.9746 -0.3990 10 1 4.0562 -2.9860 -1.4567 11 6 5.4239 -3.9672 -0.1445 12 8 5.2487 -4.8848 0.6291 13 7 6.6074 -3.8349 -0.7758 14 6 7.6813 -4.8002 -0.5289 15 6 8.9070 -4.4243 -1.3639 16 6 10.0119 -5.4169 -1.1095 17 1 9.8558 -6.2340 -0.4206 18 6 11.2223 -5.2820 -1.7560 19 7 11.4125 -4.2868 -2.5944 20 14 12.5921 -6.5121 -1.4399 21 1 12.1328 -7.8726 -1.8186 22 1 13.7812 -6.1480 -2.2515 23 1 12.9511 -6.4940 0.0008 24 6 4.7918 -1.5690 -0.0029 25 1 -0.3634 0.0009 1.0276 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3633 -0.8904 -0.5132 28 1 4.4171 1.3397 -0.0003 29 1 1.5797 -2.7939 -0.9992 30 1 1.0696 -2.6452 0.7025 31 1 2.8617 -4.4052 0.2884 32 1 3.3022 -3.1695 1.4907 33 1 6.7478 -3.1009 -1.3942 34 1 7.9443 -4.7883 0.5289 35 1 7.3440 -5.7984 -0.8081 36 1 8.6436 -4.4365 -2.4216 37 1 9.2444 -3.4261 -1.0850 38 1 12.2639 -4.1922 -3.0495 39 1 5.2350 -1.5964 0.9926 40 1 5.5266 -1.2108 -0.7240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355561514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:51 Heat of formation + Delta-G solvation = -1.337963 kcal Electronic energy + Delta-G solvation = -20947.471491 eV Core-core repulsion = 17762.087882 eV Total energy + Delta-G solvation = -3185.383609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.55093 -39.66857 -36.45931 -34.94775 -33.66966 -32.84710 -31.44770 -30.10010 -29.49993 -26.94121 -24.90124 -24.41912 -22.77998 -21.01449 -20.83902 -20.11082 -19.10160 -17.02089 -16.93692 -16.42041 -16.05102 -15.33346 -15.23848 -14.53301 -14.31128 -14.22103 -14.02693 -13.91456 -13.51730 -13.28338 -13.14971 -12.77303 -12.62504 -12.34302 -12.07664 -11.93861 -11.37988 -11.28413 -11.24011 -11.05190 -10.69429 -10.38196 -10.14115 -9.83354 -9.66753 -9.51141 -9.24477 -8.62048 -8.41593 -8.32619 -6.12936 -4.16170 1.87173 2.56162 2.82593 2.99526 3.28547 3.32696 3.34716 3.48374 4.16551 4.28395 4.33922 4.36984 4.44683 4.58688 4.79148 4.86056 4.96015 5.08518 5.20279 5.24121 5.26450 5.27644 5.46586 5.50699 5.51967 5.67541 5.78183 5.87893 6.23734 6.26496 6.27607 6.63288 6.66574 6.81258 7.05591 7.45962 7.56163 7.84252 7.89815 7.95850 8.22591 8.51530 8.89466 9.48894 10.98573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038736 B = 0.002999 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.659354 B = 9333.011333 C = 9881.324306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.202 3.798 3 N -0.494 5.494 4 C -0.021 4.021 5 C -0.020 4.020 6 N -0.452 5.452 7 C 0.103 3.897 8 C -0.113 4.113 9 C -0.112 4.112 10 H 0.100 0.900 11 C 0.512 3.488 12 O -0.549 6.549 13 N -0.718 5.718 14 C 0.121 3.879 15 C 0.013 3.987 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.036 4.036 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.171 0.829 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.398 0.602 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.089 0.911 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.715 6.844 3.314 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.060 4.060 3 N -0.214 5.214 4 C -0.168 4.168 5 C -0.134 4.134 6 N -0.137 5.137 7 C -0.019 4.019 8 C -0.151 4.151 9 C -0.134 4.134 10 H 0.118 0.882 11 C 0.297 3.703 12 O -0.427 6.427 13 N -0.368 5.368 14 C -0.001 4.001 15 C -0.024 4.024 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.075 4.075 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.188 0.812 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.232 0.768 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.025 6.910 3.747 22.446 hybrid contribution 1.280 -1.098 -0.269 1.708 sum -19.744 5.812 3.478 20.874 Atomic orbital electron populations 1.20145 0.85075 1.03854 1.03344 1.23097 0.95561 0.81337 1.06005 1.70445 1.02015 1.28096 1.20817 1.21842 0.94818 0.91919 1.08211 1.21020 0.85351 0.95328 1.11686 1.45296 1.06311 1.07250 1.54807 1.22049 0.98961 0.77680 1.03216 1.21676 0.91845 1.00663 1.00897 1.21436 0.95030 0.94743 1.02205 0.88219 1.20271 0.83454 0.85741 0.80881 1.90683 1.81584 1.34059 1.36382 1.46352 1.13675 1.31378 1.45368 1.21753 0.86834 0.90880 1.00673 1.19316 0.90468 0.97715 0.94944 1.21003 0.97492 1.11680 1.26084 0.92325 1.24995 0.98643 0.95679 0.94916 1.69939 1.24921 1.30391 1.27979 0.86569 0.81115 0.81459 0.78378 1.20117 1.21207 1.20086 1.20203 0.93305 0.90199 1.03791 0.90328 0.89250 0.91013 0.81202 0.89577 0.88829 0.88286 0.90110 0.76795 0.92474 0.92541 0.95960 0.95881 0.92731 0.89303 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.24 36.01 0.37 -0.08 16 2 C 0.20 2.23 7.94 -155.75 -1.24 0.99 16 3 N -0.49 -6.68 11.27 -11.02 -0.12 -6.81 16 4 C -0.02 -0.26 11.84 -17.95 -0.21 -0.47 16 5 C -0.02 -0.23 6.57 -81.73 -0.54 -0.76 16 6 N -0.45 -4.71 3.13 -109.45 -0.34 -5.05 16 7 C 0.10 0.79 6.60 -3.92 -0.03 0.76 16 8 C -0.11 -1.09 4.66 -26.53 -0.12 -1.21 16 9 C -0.11 -1.22 2.54 -91.46 -0.23 -1.46 16 10 H 0.10 0.97 8.12 -51.93 -0.42 0.55 16 11 C 0.51 7.79 7.13 -10.99 -0.08 7.71 16 12 O -0.55 -10.37 15.82 5.55 0.09 -10.28 16 13 N -0.72 -11.58 5.46 -60.29 -0.33 -11.91 16 14 C 0.12 2.46 5.61 -4.05 -0.02 2.44 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.04 -0.38 5.45 -27.62 -0.15 -0.53 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.35 7.95 -51.93 -0.41 -0.07 16 28 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.97 7.77 -51.93 -0.40 0.56 16 32 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.40 5.53 8.20 -40.82 -0.33 5.19 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 40 H 0.10 0.89 7.95 -51.93 -0.41 0.48 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -33.40 333.52 -8.94 -42.34 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.17 Total: 1.10 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.80 Total: -5.48 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.06 Total: -48.82 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.40 -8.94 -42.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355561514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.005 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds