Wall clock time and date at job start Thu Apr 9 2020 13:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47301 * 2 1 4 4 C 1.52993 * 109.47334 * 119.99836 * 2 1 3 5 5 C 1.50711 * 109.47043 * 65.00120 * 4 2 1 6 6 N 1.31797 * 119.03759 * 89.99868 * 5 4 2 7 7 C 1.32266 * 120.89082 * 179.97438 * 6 5 4 8 8 C 1.39238 * 119.01440 * 359.97438 * 7 6 5 9 9 N 1.39977 * 120.86642 * 180.02562 * 8 7 6 10 10 C 1.34782 * 119.99709 * 212.39214 * 9 8 7 11 11 O 1.21289 * 119.99661 * 5.26190 * 10 9 8 12 12 C 1.50693 * 119.99544 * 185.26447 * 10 9 8 13 13 C 1.53003 * 109.47189 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47825 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99678 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00290 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99939 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00071 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47374 * 89.99589 * 18 16 14 20 20 H 1.48497 * 109.47249 * 210.00063 * 18 16 14 21 21 H 1.48503 * 109.46812 * 329.99626 * 18 16 14 22 22 C 1.39231 * 118.25845 * 0.02562 * 8 7 6 23 23 N 1.31793 * 119.03607 * 269.98161 * 5 4 2 24 24 H 1.08997 * 109.47138 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47055 * 300.00371 * 1 2 3 26 26 H 1.09001 * 109.47044 * 59.99622 * 1 2 3 27 27 H 1.09002 * 109.47430 * 240.00019 * 2 1 3 28 28 H 1.08995 * 109.47254 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46920 * 300.00406 * 3 2 1 30 30 H 1.09002 * 109.46863 * 59.99672 * 3 2 1 31 31 H 1.09000 * 109.47247 * 305.00358 * 4 2 1 32 32 H 1.08996 * 109.47628 * 184.99657 * 4 2 1 33 33 H 1.07997 * 120.48789 * 179.97438 * 7 6 5 34 34 H 0.97000 * 120.00279 * 32.39395 * 9 8 7 35 35 H 1.09007 * 109.47563 * 299.99597 * 12 10 9 36 36 H 1.08996 * 109.48059 * 59.99762 * 12 10 9 37 37 H 1.09002 * 109.46885 * 300.00587 * 13 12 10 38 38 H 1.09005 * 109.46850 * 59.99155 * 13 12 10 39 39 H 0.96993 * 120.00092 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.48825 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 -2.1733 1.1888 6 7 2.4567 -3.0374 0.6182 7 6 2.1438 -4.3205 0.5455 8 6 0.9341 -4.7521 1.0831 9 7 0.5643 -6.1010 1.0281 10 6 -0.7356 -6.4394 0.9178 11 8 -1.5762 -5.5776 0.7704 12 6 -1.1446 -7.8886 0.9779 13 6 -2.6635 -7.9964 0.8294 14 6 -3.0726 -9.4456 0.8888 15 1 -2.3239 -10.2131 1.0190 16 6 -4.4025 -9.7917 0.7770 17 7 -4.7593 -11.0565 0.8283 18 14 -5.6973 -8.4644 0.5512 19 1 -5.8981 -8.2102 -0.8980 20 1 -6.9767 -8.9127 1.1571 21 1 -5.2463 -7.2149 1.2150 22 6 0.1020 -3.8068 1.6769 23 7 0.4877 -2.5421 1.7085 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6443 1.2951 33 1 2.8166 -5.0228 0.0761 34 1 1.2436 -6.7922 1.0693 35 1 -0.6604 -8.4366 0.1695 36 1 -0.8426 -8.3121 1.9357 37 1 -3.1474 -7.4485 1.6380 38 1 -2.9660 -7.5728 -0.1283 39 1 -5.6949 -11.3001 0.7493 40 1 -0.8447 -4.1019 2.1049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360445536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:58 Heat of formation + Delta-G solvation = -33.670294 kcal Electronic energy + Delta-G solvation = -20657.775160 eV Core-core repulsion = 17470.989516 eV Total energy + Delta-G solvation = -3186.785644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.47401 -40.82726 -37.55827 -36.18352 -35.58061 -34.79299 -33.46392 -31.93689 -28.88905 -28.03705 -27.45150 -25.90411 -24.29843 -22.97820 -21.50925 -21.09831 -19.49834 -18.78794 -18.49612 -17.83981 -17.43732 -16.58515 -16.23205 -16.15051 -15.84191 -15.25670 -14.83520 -14.75290 -14.64312 -14.60752 -14.35893 -13.52557 -13.44336 -13.07176 -12.95355 -12.85181 -12.62781 -12.34038 -12.14586 -11.99508 -11.97392 -11.80582 -11.75744 -11.71849 -11.57788 -11.40858 -11.01122 -10.78562 -10.29935 -9.48294 -8.31952 -6.34689 -0.27590 -0.01766 1.32536 1.35593 1.47957 1.48858 1.84807 2.33833 2.66270 2.95962 3.04290 3.12637 3.40632 3.68872 3.92576 3.95588 4.01490 4.04587 4.32390 4.37532 4.47004 4.61673 4.67206 4.75722 4.81501 4.88101 4.95921 4.99328 5.02529 5.10896 5.24656 5.33736 5.39194 5.42725 5.45704 5.47542 5.60218 5.89596 6.20401 6.28617 6.72398 7.00070 7.04884 7.30870 8.83535 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.003218 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.204339 B = 8699.709666 C = 9402.665682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.043 4.043 5 C 0.285 3.715 6 N -0.506 5.506 7 C 0.134 3.866 8 C 0.042 3.958 9 N -0.648 5.648 10 C 0.519 3.481 11 O -0.561 6.561 12 C -0.112 4.112 13 C 0.002 3.998 14 C -0.527 4.527 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.943 5.943 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.260 1.260 22 C 0.126 3.874 23 N -0.510 5.510 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.210 0.790 34 H 0.436 0.564 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.012 0.988 38 H 0.009 0.991 39 H 0.267 0.733 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.869 20.313 -0.037 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.196 4.196 4 C -0.082 4.082 5 C 0.018 3.982 6 N -0.219 5.219 7 C -0.035 4.035 8 C -0.058 4.058 9 N -0.296 5.296 10 C 0.309 3.691 11 O -0.438 6.438 12 C -0.151 4.151 13 C -0.036 4.036 14 C -0.565 4.565 15 H 0.072 0.928 16 C -0.184 4.184 17 N -0.584 5.584 18 Si 0.760 3.240 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.184 1.184 22 C -0.042 4.042 23 N -0.224 5.224 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.227 0.773 34 H 0.277 0.723 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 18.350 21.694 -0.082 28.414 hybrid contribution -1.228 -1.407 -0.113 1.871 sum 17.122 20.287 -0.195 26.548 Atomic orbital electron populations 1.21836 0.95758 1.00512 1.02092 1.21014 0.95361 0.97439 0.96554 1.21775 1.01664 0.93590 1.02602 1.20590 1.02790 0.84573 1.00201 1.23643 0.85745 0.98231 0.90559 1.68279 1.34147 1.02689 1.16790 1.23675 0.94008 0.92896 0.92937 1.19672 0.98349 0.87163 1.00649 1.43354 1.08945 1.04985 1.72359 1.21609 0.81376 0.92747 0.73379 1.90688 1.51795 1.52814 1.48458 1.21525 0.98043 0.89560 1.05987 1.19263 0.93037 0.94783 0.96544 1.21418 0.93322 0.92463 1.49303 0.92774 1.25780 1.00996 0.97068 0.94560 1.70014 1.18015 1.18054 1.52292 0.85873 0.78717 0.80308 0.79070 1.19587 1.20648 1.18404 1.23328 0.99589 0.88158 0.93135 1.68311 1.17235 1.17796 1.19058 0.95454 0.91931 0.92322 0.92003 0.91326 0.92052 0.91754 0.88776 0.87716 0.77335 0.72299 0.86833 0.86855 0.96942 0.97219 0.92427 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.91 71.98 0.64 -2.26 16 2 C -0.08 -1.40 2.91 -10.80 -0.03 -1.43 16 3 C -0.14 -1.58 9.19 71.98 0.66 -0.92 16 4 C -0.04 -0.75 5.12 29.85 0.15 -0.59 16 5 C 0.29 6.84 6.25 138.75 0.87 7.71 16 6 N -0.51 -11.38 10.32 -187.37 -1.93 -13.31 16 7 C 0.13 2.60 11.26 84.87 0.96 3.55 16 8 C 0.04 0.99 6.34 38.32 0.24 1.23 16 9 N -0.65 -13.86 5.37 -302.91 -1.63 -15.48 16 10 C 0.52 16.07 7.60 87.65 0.67 16.73 16 11 O -0.56 -22.39 13.68 -3.06 -0.04 -22.44 16 12 C -0.11 -3.67 5.64 29.85 0.17 -3.50 16 13 C 0.00 0.08 3.33 29.85 0.10 0.18 16 14 C -0.53 -29.06 9.66 25.60 0.25 -28.81 16 15 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 16 C 0.01 0.80 5.47 84.65 0.46 1.26 16 17 N -0.94 -57.93 13.96 21.45 0.30 -57.64 16 18 Si 0.94 45.75 27.47 68.60 1.88 47.63 16 19 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 22 C 0.13 3.68 9.94 84.87 0.84 4.52 16 23 N -0.51 -14.34 9.25 -187.38 -1.73 -16.07 16 24 H 0.03 0.70 6.66 -2.39 -0.02 0.69 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.44 5.46 8.82 -92.71 -0.82 4.64 16 35 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 36 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 38 H 0.01 0.46 7.53 -2.38 -0.02 0.44 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.16 5.17 6.47 -2.91 -0.02 5.16 16 Total: -1.00 -73.18 334.83 2.99 -70.19 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.17 Total: 9.44 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.98 Total: -2.33 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.99 Total: -102.50 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.04 Total: -22.44 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -73.18 2.99 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360445536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.522 kcal (2) G-P(sol) polarization free energy of solvation -73.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds