Wall clock time and date at job start Thu Apr 9 2020 13:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31799 * 120.89270 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04657 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90120 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47175 * 34.99394 * 11 10 8 13 13 C 1.53008 * 109.46800 * 274.99741 * 11 10 8 14 14 C 1.52999 * 109.47021 * 154.99984 * 11 10 8 15 15 H 1.08999 * 109.47359 * 60.00089 * 14 11 10 16 16 C 1.52998 * 109.47137 * 299.99619 * 14 11 10 17 17 N 1.46504 * 109.46859 * 179.97438 * 14 11 10 18 18 C 1.36938 * 120.00022 * 204.99831 * 17 14 11 19 19 H 1.07999 * 119.99659 * 0.02562 * 18 17 14 20 20 C 1.38809 * 119.99978 * 180.02562 * 18 17 14 21 21 N 1.31617 * 119.99921 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00062 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46663 * 59.99753 * 22 20 18 24 24 H 1.48498 * 109.47147 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47149 * 300.00113 * 22 20 18 26 26 H 1.09004 * 109.47271 * 263.65001 * 1 2 3 27 27 H 1.09001 * 109.47409 * 23.64553 * 1 2 3 28 28 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 29 29 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 30 30 H 1.08003 * 119.55145 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.49908 * 179.97438 * 6 5 4 32 32 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.46750 * 300.00099 * 13 11 10 34 34 H 1.09000 * 109.46725 * 59.99918 * 13 11 10 35 35 H 1.08994 * 109.46762 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47248 * 59.99824 * 16 14 11 37 37 H 1.09004 * 109.47215 * 180.02562 * 16 14 11 38 38 H 1.09006 * 109.47157 * 300.00135 * 16 14 11 39 39 H 0.96997 * 119.99842 * 25.00431 * 17 14 11 40 40 H 0.97004 * 119.99665 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 1 0.5405 -4.8271 -0.6251 13 6 1.2832 -5.4012 1.3139 14 6 2.3453 -5.9769 -0.8732 15 1 3.3087 -6.0887 -0.3759 16 6 2.5660 -5.5146 -2.3148 17 7 1.6447 -7.2636 -0.8743 18 6 2.3529 -8.4288 -1.0008 19 1 3.4280 -8.3991 -1.0992 20 6 1.6891 -9.6478 -1.0024 21 7 0.3788 -9.6838 -0.8829 22 14 2.6551 -11.2373 -1.1756 23 1 3.6194 -11.3552 -0.0523 24 1 1.7199 -12.3904 -1.1490 25 1 3.3942 -11.2295 -2.4636 26 1 -0.3634 -0.1137 1.0214 27 1 -0.3634 0.9414 -0.4122 28 1 -0.3633 -0.8277 -0.6091 29 1 1.6691 2.1263 0.0006 30 1 5.3121 0.1416 -0.0014 31 1 4.1995 -2.0547 -0.0010 32 1 3.1703 -3.6259 -0.2154 33 1 2.2468 -5.5130 1.8111 34 1 0.6839 -4.6616 1.8448 35 1 0.7614 -6.3582 1.3126 36 1 3.0874 -4.5574 -2.3137 37 1 3.1650 -6.2544 -2.8460 38 1 1.6024 -5.4029 -2.8122 39 1 0.6791 -7.2901 -0.7856 40 1 -0.0850 -10.5357 -0.8837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733975442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:57 Heat of formation + Delta-G solvation = 6.003162 kcal Electronic energy + Delta-G solvation = -21310.846512 eV Core-core repulsion = 18125.781238 eV Total energy + Delta-G solvation = -3185.065274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90769 -39.24460 -36.86061 -34.22126 -33.54934 -32.63651 -31.48821 -29.52416 -28.45559 -27.49107 -24.94339 -24.04070 -23.04181 -22.18035 -20.63258 -20.11366 -18.12551 -17.45307 -16.74701 -15.76292 -15.49456 -15.39722 -15.05823 -14.64085 -14.15590 -13.76881 -13.69444 -13.61301 -13.33479 -13.12012 -12.81909 -12.55057 -12.40975 -11.92537 -11.78844 -11.74567 -11.23118 -11.00183 -10.86198 -10.73012 -10.30015 -10.26685 -10.05472 -9.95159 -9.76065 -9.44268 -9.22022 -9.06029 -8.82406 -7.04278 -5.81824 -3.11891 0.52277 0.80995 2.84260 3.09065 3.40404 3.45311 3.46230 3.61830 4.13971 4.41013 4.50364 4.55774 4.59206 4.74324 5.10847 5.21913 5.38339 5.43764 5.46580 5.57258 5.60786 5.63959 5.68908 5.82982 5.86414 6.04309 6.09466 6.22865 6.31844 6.35263 6.38995 6.46473 6.55279 6.75094 6.86849 6.96559 7.52886 7.63351 7.63634 8.19111 8.35650 9.47092 10.01601 10.36706 11.40397 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036267 B = 0.003513 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.868582 B = 7968.696586 C = 8390.414519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.469 5.469 5 C 0.084 3.916 6 C -0.137 4.137 7 C -0.090 4.090 8 C 0.554 3.446 9 O -0.525 6.525 10 N -0.708 5.708 11 C 0.135 3.865 12 H 0.087 0.913 13 C -0.152 4.152 14 C 0.169 3.831 15 H 0.051 0.949 16 C -0.165 4.165 17 N -0.717 5.717 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.397 0.603 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.386 0.614 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 19.608 2.213 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.067 4.067 4 N -0.178 5.178 5 C -0.072 4.072 6 C -0.157 4.157 7 C -0.101 4.101 8 C 0.340 3.660 9 O -0.402 6.402 10 N -0.359 5.359 11 C 0.031 3.969 12 H 0.105 0.895 13 C -0.211 4.211 14 C 0.058 3.942 15 H 0.069 0.931 16 C -0.225 4.225 17 N -0.360 5.360 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.232 0.768 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.220 0.780 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.049 20.169 2.282 20.916 hybrid contribution 0.391 -1.775 -0.168 1.825 sum 5.440 18.394 2.114 19.298 Atomic orbital electron populations 1.20996 0.88973 1.03467 1.03971 1.21149 0.98523 0.92447 0.95923 1.22734 0.89758 0.97389 0.96801 1.67537 1.08338 1.31846 1.10043 1.22702 1.00539 0.87248 0.96694 1.22381 0.93964 1.00264 0.99118 1.20365 0.93788 0.94178 1.01771 1.18117 0.87081 0.83490 0.77310 1.90741 1.13390 1.86959 1.49135 1.46018 1.10761 1.06025 1.73051 1.21415 0.97052 0.81084 0.97332 0.89452 1.22054 1.01658 1.02183 0.95179 1.20387 0.94742 0.86184 0.92883 0.93148 1.22460 1.01128 0.98958 0.99971 1.42275 1.06618 0.99278 1.87780 1.19139 0.91195 0.84209 1.42729 0.91189 1.24740 0.95604 0.97641 1.02673 1.69651 1.06262 1.25115 1.56803 0.86273 0.78695 0.83320 0.77890 1.21240 1.21684 1.21274 0.90325 0.91953 0.88420 0.82220 0.82199 0.84227 0.76831 0.93028 0.93396 0.89931 0.94671 0.92539 0.93362 0.78015 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.84 36.01 0.32 -0.90 16 2 C -0.08 -0.85 5.93 -104.06 -0.62 -1.47 16 3 C 0.09 0.90 10.83 -17.59 -0.19 0.70 16 4 N -0.47 -4.99 10.34 -13.30 -0.14 -5.13 16 5 C 0.08 0.76 11.17 -17.59 -0.20 0.57 16 6 C -0.14 -1.27 9.60 -39.03 -0.37 -1.64 16 7 C -0.09 -1.05 5.91 -104.65 -0.62 -1.67 16 8 C 0.55 7.74 7.70 -12.19 -0.09 7.65 16 9 O -0.52 -8.82 13.19 5.35 0.07 -8.75 16 10 N -0.71 -9.32 4.34 -54.65 -0.24 -9.56 16 11 C 0.14 2.22 2.21 -67.93 -0.15 2.07 16 12 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 13 C -0.15 -2.55 9.33 37.16 0.35 -2.21 16 14 C 0.17 3.11 2.52 -67.93 -0.17 2.93 16 15 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 16 C -0.16 -2.83 9.33 37.16 0.35 -2.48 16 17 N -0.72 -17.01 4.43 -53.43 -0.24 -17.25 16 18 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 28 H 0.10 1.24 5.95 -51.93 -0.31 0.93 16 29 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.14 0.95 6.58 -52.48 -0.35 0.60 16 32 H 0.40 4.19 6.56 -40.82 -0.27 3.92 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16 36 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.39 9.87 7.58 -40.82 -0.31 9.56 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -31.16 333.28 -7.21 -38.37 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.74 Total: 10.56 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.65 Total: -3.37 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.11 Total: -58.62 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.07 Total: -8.75 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.16 -7.21 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.373 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds