Wall clock time and date at job start Thu Apr 9 2020 13:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31799 * 120.89270 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04657 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90120 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47175 * 34.99394 * 11 10 8 13 13 C 1.53008 * 109.46800 * 274.99741 * 11 10 8 14 14 C 1.52999 * 109.47021 * 154.99984 * 11 10 8 15 15 H 1.08999 * 109.47359 * 60.00089 * 14 11 10 16 16 C 1.52998 * 109.47137 * 299.99619 * 14 11 10 17 17 N 1.46504 * 109.46859 * 179.97438 * 14 11 10 18 18 C 1.36938 * 120.00022 * 204.99831 * 17 14 11 19 19 H 1.07999 * 119.99659 * 0.02562 * 18 17 14 20 20 C 1.38809 * 119.99978 * 180.02562 * 18 17 14 21 21 N 1.31617 * 119.99921 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00062 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46663 * 59.99753 * 22 20 18 24 24 H 1.48498 * 109.47147 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47149 * 300.00113 * 22 20 18 26 26 H 1.09004 * 109.47271 * 263.65001 * 1 2 3 27 27 H 1.09001 * 109.47409 * 23.64553 * 1 2 3 28 28 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 29 29 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 30 30 H 1.08003 * 119.55145 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.49908 * 179.97438 * 6 5 4 32 32 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.46750 * 300.00099 * 13 11 10 34 34 H 1.09000 * 109.46725 * 59.99918 * 13 11 10 35 35 H 1.08994 * 109.46762 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47248 * 59.99824 * 16 14 11 37 37 H 1.09004 * 109.47215 * 180.02562 * 16 14 11 38 38 H 1.09006 * 109.47157 * 300.00135 * 16 14 11 39 39 H 0.96997 * 119.99842 * 25.00431 * 17 14 11 40 40 H 0.97004 * 119.99665 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 1 0.5405 -4.8271 -0.6251 13 6 1.2832 -5.4012 1.3139 14 6 2.3453 -5.9769 -0.8732 15 1 3.3087 -6.0887 -0.3759 16 6 2.5660 -5.5146 -2.3148 17 7 1.6447 -7.2636 -0.8743 18 6 2.3529 -8.4288 -1.0008 19 1 3.4280 -8.3991 -1.0992 20 6 1.6891 -9.6478 -1.0024 21 7 0.3788 -9.6838 -0.8829 22 14 2.6551 -11.2373 -1.1756 23 1 3.6194 -11.3552 -0.0523 24 1 1.7199 -12.3904 -1.1490 25 1 3.3942 -11.2295 -2.4636 26 1 -0.3634 -0.1137 1.0214 27 1 -0.3634 0.9414 -0.4122 28 1 -0.3633 -0.8277 -0.6091 29 1 1.6691 2.1263 0.0006 30 1 5.3121 0.1416 -0.0014 31 1 4.1995 -2.0547 -0.0010 32 1 3.1703 -3.6259 -0.2154 33 1 2.2468 -5.5130 1.8111 34 1 0.6839 -4.6616 1.8448 35 1 0.7614 -6.3582 1.3126 36 1 3.0874 -4.5574 -2.3137 37 1 3.1650 -6.2544 -2.8460 38 1 1.6024 -5.4029 -2.8122 39 1 0.6791 -7.2901 -0.7856 40 1 -0.0850 -10.5357 -0.8837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733975442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:57 Heat of formation + Delta-G solvation = -14.632069 kcal Electronic energy + Delta-G solvation = -21311.741323 eV Core-core repulsion = 18125.781238 eV Total energy + Delta-G solvation = -3185.960085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81219 -40.28618 -38.29860 -35.75065 -34.39323 -33.93842 -32.84955 -30.88262 -30.15394 -28.31419 -25.93989 -25.85742 -24.27932 -23.12934 -21.75953 -21.52648 -19.44896 -18.99022 -17.72786 -16.96716 -16.59419 -16.37657 -16.19720 -16.08188 -15.36668 -15.25684 -15.01561 -14.69585 -14.57019 -14.30165 -14.09324 -13.63494 -13.46446 -13.37719 -13.17032 -12.92171 -12.70916 -12.60074 -12.49379 -12.25859 -12.20379 -11.73264 -11.48134 -11.25319 -10.97116 -10.89024 -10.36274 -10.14981 -9.89911 -9.01503 -7.91567 -5.20673 -0.32163 0.09432 1.49799 1.52092 1.57977 1.83605 1.96656 2.59630 2.82554 3.42599 3.47280 3.52244 3.74085 3.82896 3.84449 3.96779 4.03494 4.18688 4.33809 4.43833 4.57711 4.63298 4.74706 4.76616 4.80036 4.85579 4.86829 4.93833 5.02442 5.10479 5.14867 5.30437 5.39069 5.49895 5.50890 5.57797 5.64687 6.29065 6.46528 6.91223 7.12471 7.35783 8.08924 8.32032 9.31715 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036267 B = 0.003513 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.868582 B = 7968.696586 C = 8390.414519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.091 3.909 4 N -0.485 5.485 5 C 0.085 3.915 6 C -0.129 4.129 7 C -0.108 4.108 8 C 0.554 3.446 9 O -0.559 6.559 10 N -0.696 5.696 11 C 0.152 3.848 12 H 0.063 0.937 13 C -0.143 4.143 14 C 0.168 3.832 15 H 0.064 0.936 16 C -0.155 4.155 17 N -0.730 5.730 18 C -0.235 4.235 19 H 0.081 0.919 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.970 3.030 23 H -0.276 1.276 24 H -0.301 1.301 25 H -0.279 1.279 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.184 0.816 30 H 0.192 0.808 31 H 0.167 0.833 32 H 0.413 0.587 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.372 0.628 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 21.232 2.202 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.066 4.066 4 N -0.194 5.194 5 C -0.071 4.071 6 C -0.149 4.149 7 C -0.119 4.119 8 C 0.341 3.659 9 O -0.439 6.439 10 N -0.348 5.348 11 C 0.046 3.954 12 H 0.081 0.919 13 C -0.202 4.202 14 C 0.059 3.941 15 H 0.082 0.918 16 C -0.215 4.215 17 N -0.371 5.371 18 C -0.367 4.367 19 H 0.099 0.901 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.202 1.202 24 H -0.228 1.228 25 H -0.205 1.205 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.201 0.799 30 H 0.209 0.791 31 H 0.184 0.816 32 H 0.251 0.749 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.204 0.796 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.813 21.845 2.264 23.310 hybrid contribution -0.396 -2.140 -0.156 2.182 sum 7.417 19.704 2.108 21.159 Atomic orbital electron populations 1.20904 0.89121 1.03699 1.03200 1.21280 0.98655 0.92868 0.96525 1.23063 0.89749 0.97811 0.95999 1.67613 1.08650 1.32746 1.10388 1.23255 1.01983 0.86618 0.95259 1.22648 0.92866 1.01651 0.97767 1.20275 0.94963 0.92854 1.03837 1.18515 0.86764 0.84300 0.76287 1.90739 1.15080 1.87504 1.50540 1.45742 1.11419 1.04636 1.73021 1.20948 0.95913 0.82091 0.96447 0.91927 1.21932 1.01979 1.00623 0.95639 1.20564 0.94880 0.84561 0.94100 0.91847 1.22315 1.00521 1.00482 0.98211 1.42459 1.06137 1.00697 1.87772 1.19561 0.91802 0.85100 1.40191 0.90098 1.25522 0.96428 1.00857 1.03905 1.69819 1.07887 1.25155 1.59247 0.85256 0.77265 0.79297 0.78196 1.20237 1.22753 1.20497 0.90966 0.89412 0.91096 0.79911 0.79087 0.81591 0.74900 0.91637 0.93285 0.92847 0.90890 0.93729 0.94935 0.79625 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.84 71.24 0.63 -1.67 16 2 C -0.09 -1.86 5.93 -19.50 -0.12 -1.98 16 3 C 0.09 1.58 10.83 84.68 0.92 2.50 16 4 N -0.49 -8.94 10.34 -196.01 -2.03 -10.96 16 5 C 0.08 1.23 11.17 84.67 0.95 2.18 16 6 C -0.13 -1.96 9.60 22.63 0.22 -1.75 16 7 C -0.11 -2.33 5.91 -19.88 -0.12 -2.45 16 8 C 0.55 14.99 7.70 86.88 0.67 15.66 16 9 O -0.56 -19.11 13.19 -3.78 -0.05 -19.16 16 10 N -0.70 -17.12 4.34 -445.11 -1.93 -19.05 16 11 C 0.15 4.91 2.21 44.99 0.10 5.01 16 12 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 13 C -0.14 -4.80 9.33 71.98 0.67 -4.13 16 14 C 0.17 6.00 2.52 44.99 0.11 6.11 16 15 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 16 C -0.16 -5.07 9.33 71.98 0.67 -4.40 16 17 N -0.73 -34.86 4.43 -322.94 -1.43 -36.29 16 18 C -0.23 -12.37 9.93 84.03 0.83 -11.54 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 22 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.26 8.06 -2.39 -0.02 1.24 16 28 H 0.07 1.86 5.95 -2.39 -0.01 1.84 16 29 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.17 1.52 6.58 -2.91 -0.02 1.50 16 32 H 0.41 7.37 6.56 -92.71 -0.61 6.76 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 2.10 7.44 -2.39 -0.02 2.09 16 36 H 0.07 1.81 7.44 -2.39 -0.02 1.79 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.37 19.67 7.58 -92.71 -0.70 18.97 16 40 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -68.53 333.28 2.62 -65.91 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.25 Total: 31.04 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 6.00 Total: -0.16 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -5.11 Total: -124.64 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.53 2.62 -65.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733975442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.277 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds