Wall clock time and date at job start Thu Apr 9 2020 13:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38633 * 120.46995 * 2 1 4 4 C 1.38586 * 118.48924 * 180.02562 * 3 2 1 5 5 C 1.38601 * 119.35010 * 359.97438 * 4 3 2 6 6 N 1.31491 * 120.90147 * 0.02562 * 5 4 3 7 7 C 1.32745 * 121.64682 * 359.97438 * 6 5 4 8 8 C 1.48160 * 119.72381 * 179.97438 * 7 6 5 9 9 O 1.21521 * 120.00182 * 174.22844 * 8 7 6 10 10 N 1.34781 * 120.00091 * 354.22464 * 8 7 6 11 11 C 1.46496 * 119.99891 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47130 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47138 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.47614 * 54.99685 * 13 12 11 15 15 C 1.53005 * 109.46948 * 175.00177 * 13 12 11 16 16 N 1.46503 * 109.47017 * 294.99652 * 13 12 11 17 17 C 1.36940 * 119.99857 * 155.00522 * 16 13 12 18 18 H 1.07995 * 119.99924 * 359.97438 * 17 16 13 19 19 C 1.38813 * 119.99908 * 180.02562 * 17 16 13 20 20 N 1.31621 * 119.99804 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99822 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47144 * 60.00228 * 21 19 17 23 23 H 1.48497 * 109.46660 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47134 * 299.99916 * 21 19 17 25 25 H 1.09002 * 109.46719 * 263.26016 * 1 2 3 26 26 H 1.08996 * 109.47286 * 23.26251 * 1 2 3 27 27 H 1.09004 * 109.47097 * 143.26939 * 1 2 3 28 28 H 1.08003 * 120.75495 * 0.02624 * 3 2 1 29 29 H 1.08000 * 120.32234 * 180.02562 * 4 3 2 30 30 H 1.08002 * 119.54717 * 180.28199 * 5 4 3 31 31 H 0.97000 * 119.99770 * 0.02562 * 10 8 7 32 32 H 1.09006 * 109.47350 * 300.00425 * 11 10 8 33 33 H 1.09007 * 109.47360 * 60.00137 * 11 10 8 34 34 H 1.09006 * 109.47071 * 300.00253 * 12 11 10 35 35 H 1.09003 * 109.47469 * 60.00057 * 12 11 10 36 36 H 1.09000 * 109.47202 * 180.02562 * 15 13 12 37 37 H 1.08997 * 109.46756 * 299.99386 * 15 13 12 38 38 H 1.08995 * 109.47365 * 59.99356 * 15 13 12 39 39 H 0.96998 * 119.99645 * 335.00094 * 16 13 12 40 40 H 0.96999 * 119.99490 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0839 -0.0005 6 7 3.5406 -1.2023 -0.0005 7 6 2.2132 -1.2004 0.0000 8 6 1.4767 -2.4860 -0.0006 9 8 0.2662 -2.4929 0.1057 10 7 2.1494 -3.6479 -0.1191 11 6 1.4211 -4.9190 -0.1202 12 6 2.4129 -6.0749 -0.2657 13 6 1.6522 -7.4024 -0.2676 14 1 0.8898 -7.3833 -1.0462 15 6 2.6285 -8.5492 -0.5376 16 7 1.0140 -7.6013 1.0360 17 6 -0.0960 -8.3964 1.1407 18 1 -0.5011 -8.8766 0.2623 19 6 -0.7011 -8.5844 2.3758 20 7 -0.2077 -7.9988 3.4463 21 14 -2.2157 -9.6685 2.5185 22 1 -1.8839 -11.0443 2.0684 23 1 -2.6659 -9.7061 3.9331 24 1 -3.3007 -9.1175 1.6676 25 1 -0.3633 -0.1206 1.0206 26 1 -0.3634 0.9441 -0.4059 27 1 -0.3633 -0.8237 -0.6146 28 1 1.6901 2.1415 0.0004 29 1 4.1721 2.0598 -0.0001 30 1 5.3114 -0.1249 0.0037 31 1 3.1157 -3.6425 -0.2036 32 1 0.8745 -5.0255 0.8169 33 1 0.7192 -4.9349 -0.9540 34 1 2.9598 -5.9686 -1.2027 35 1 3.1145 -6.0589 0.5683 36 1 2.0865 -9.4949 -0.5394 37 1 3.1033 -8.4012 -1.5075 38 1 3.3909 -8.5683 0.2411 39 1 1.3777 -7.1697 1.8249 40 1 -0.6303 -8.1305 4.3094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753003871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:07 Heat of formation + Delta-G solvation = 2.062606 kcal Electronic energy + Delta-G solvation = -20836.550265 eV Core-core repulsion = 17651.314116 eV Total energy + Delta-G solvation = -3185.236149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83086 -38.86462 -36.56355 -34.62867 -33.50463 -32.39832 -32.02523 -29.32708 -28.21018 -27.32948 -24.88419 -23.74451 -22.76142 -22.04589 -20.73342 -19.75208 -18.03471 -17.12991 -16.90706 -15.82750 -15.62816 -15.29348 -14.92424 -14.77198 -14.24000 -13.69376 -13.54299 -13.43807 -13.36450 -12.87798 -12.79713 -12.46987 -12.35539 -12.14688 -11.95934 -11.49736 -11.02745 -10.86438 -10.68749 -10.59118 -10.25258 -10.12065 -10.04800 -9.93151 -9.59231 -9.41076 -9.22976 -8.86510 -8.68341 -6.90401 -5.70262 -2.98915 0.49227 0.96321 2.78187 3.25361 3.48975 3.53313 3.54162 3.72134 4.05153 4.50525 4.60869 4.65058 4.68447 4.73982 5.13949 5.31349 5.37739 5.46012 5.50300 5.61589 5.69300 5.73830 5.77646 5.92938 5.95936 6.12866 6.16048 6.22734 6.37231 6.43565 6.45590 6.56259 6.74271 6.77051 6.91472 7.11205 7.45732 7.75794 7.78447 8.36189 8.48120 9.59300 10.16412 10.51133 11.52339 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.003561 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.324612 B = 7862.160674 C = 8616.105236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.088 4.088 4 C -0.150 4.150 5 C 0.088 3.912 6 N -0.455 5.455 7 C 0.077 3.923 8 C 0.563 3.437 9 O -0.525 6.525 10 N -0.707 5.707 11 C 0.120 3.880 12 C -0.133 4.133 13 C 0.175 3.825 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.406 0.594 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 18.760 -9.209 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.114 4.114 4 C -0.170 4.170 5 C -0.072 4.072 6 N -0.166 5.166 7 C -0.061 4.061 8 C 0.347 3.653 9 O -0.401 6.401 10 N -0.357 5.357 11 C -0.002 4.002 12 C -0.171 4.171 13 C 0.064 3.936 14 H 0.067 0.933 15 C -0.223 4.223 16 N -0.366 5.366 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.241 0.759 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.038 17.774 -9.145 21.937 hybrid contribution -0.444 0.404 0.460 0.756 sum 8.594 18.178 -8.685 21.903 Atomic orbital electron populations 1.21085 0.88861 1.03293 1.04320 1.20995 0.98580 0.92372 0.95655 1.21562 0.94170 0.98099 0.97590 1.22351 0.95281 0.99810 0.99541 1.22765 1.00439 0.87356 0.96672 1.67544 1.07182 1.31969 1.09904 1.21149 0.89775 0.93937 1.01285 1.17841 0.86686 0.83104 0.77657 1.90769 1.13082 1.86604 1.49684 1.45984 1.11457 1.05890 1.72385 1.21527 0.94664 0.80202 1.03817 1.22062 0.98191 0.95273 1.01599 1.20151 0.92946 0.90226 0.90251 0.93290 1.22423 0.99961 1.01040 0.98923 1.42457 1.32195 1.58072 1.03852 1.19180 1.03017 1.21175 0.93537 0.91273 1.24723 0.99558 1.00923 0.95680 1.69650 1.42273 1.47609 0.98590 0.86293 0.83173 0.80318 0.76562 1.21393 1.21779 1.21260 0.90128 0.92305 0.88063 0.84223 0.84353 0.82137 0.75890 0.89508 0.91623 0.91867 0.91502 0.92746 0.94571 0.93508 0.78271 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.74 36.00 0.31 -1.06 16 2 C -0.07 -0.86 5.93 -104.09 -0.62 -1.48 16 3 C -0.09 -0.77 9.83 -39.31 -0.39 -1.15 16 4 C -0.15 -1.12 10.11 -39.32 -0.40 -1.52 16 5 C 0.09 0.79 11.18 -17.56 -0.20 0.59 16 6 N -0.46 -5.58 9.56 -9.80 -0.09 -5.67 16 7 C 0.08 1.06 6.75 -83.01 -0.56 0.50 16 8 C 0.56 9.20 7.75 -12.18 -0.09 9.11 16 9 O -0.52 -9.96 13.31 5.35 0.07 -9.89 16 10 N -0.71 -10.82 5.54 -61.14 -0.34 -11.16 16 11 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 12 C -0.13 -2.12 4.87 -26.73 -0.13 -2.25 16 13 C 0.17 3.41 2.89 -67.93 -0.20 3.22 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 16 N -0.72 -18.01 4.57 -53.42 -0.24 -18.26 16 17 C -0.24 -6.64 9.93 -15.06 -0.15 -6.78 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 21 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 27 H 0.10 1.40 5.85 -51.93 -0.30 1.10 16 28 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.41 5.39 7.82 -40.82 -0.32 5.07 16 32 H 0.09 1.84 7.75 -51.93 -0.40 1.44 16 33 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.38 10.20 7.80 -40.82 -0.32 9.89 16 40 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -32.76 338.11 -7.94 -40.71 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.96 Total: 11.04 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.18 Total: -1.80 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.05 Total: -62.94 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.76 -7.94 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753003871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.770 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds