Wall clock time and date at job start Thu Apr 9 2020 13:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38634 * 120.32523 * 2 1 4 4 C 1.38595 * 118.48675 * 179.70795 * 3 2 1 5 5 C 1.39302 * 119.05788 * 0.56031 * 4 3 2 6 6 C 1.48168 * 119.72038 * 179.70527 * 5 4 3 7 7 O 1.21516 * 120.00280 * 359.45447 * 6 5 4 8 8 N 1.34784 * 119.99978 * 179.72605 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72840 * 8 6 5 10 10 H 1.08990 * 109.47400 * 34.99963 * 9 8 6 11 11 C 1.52998 * 109.46843 * 274.99901 * 9 8 6 12 12 C 1.52997 * 109.46833 * 155.00334 * 9 8 6 13 13 N 1.46508 * 109.47309 * 304.99485 * 12 9 8 14 14 C 1.36932 * 120.00271 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99776 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99849 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00042 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47436 * 89.99909 * 18 16 14 20 20 H 1.48500 * 109.46933 * 209.99886 * 18 16 14 21 21 H 1.48499 * 109.47382 * 329.99962 * 18 16 14 22 22 N 1.32716 * 120.55840 * 359.42970 * 5 4 3 23 23 C 1.31526 * 121.63779 * 0.27834 * 22 5 4 24 24 C 1.50708 * 119.54711 * 179.97438 * 23 22 5 25 25 H 1.09002 * 109.46626 * 270.02153 * 1 2 3 26 26 H 1.09008 * 109.47059 * 30.01251 * 1 2 3 27 27 H 1.08991 * 109.47288 * 150.01936 * 1 2 3 28 28 H 1.08001 * 120.75522 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.46612 * 180.28565 * 4 3 2 30 30 H 0.97005 * 119.99846 * 359.72628 * 8 6 5 31 31 H 1.08997 * 109.47450 * 60.00399 * 11 9 8 32 32 H 1.08998 * 109.47317 * 180.02562 * 11 9 8 33 33 H 1.09007 * 109.47248 * 300.00110 * 11 9 8 34 34 H 1.08994 * 109.47777 * 64.99475 * 12 9 8 35 35 H 1.09004 * 109.47370 * 184.99971 * 12 9 8 36 36 H 0.97006 * 119.99206 * 0.02562 * 13 12 9 37 37 H 0.96995 * 120.00344 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47086 * 89.99649 * 24 23 22 39 39 H 1.08993 * 109.47009 * 210.00114 * 24 23 22 40 40 H 1.09000 * 109.46658 * 330.00101 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1967 0.0000 4 6 3.5922 1.1522 0.0062 5 6 4.2294 -0.0865 0.0003 6 6 5.7096 -0.1511 0.0002 7 8 6.3626 0.8737 -0.0048 8 7 6.3320 -1.3467 0.0001 9 6 7.7956 -1.4105 -0.0061 10 1 8.1978 -0.5842 0.5798 11 6 8.3044 -1.3102 -1.4455 12 6 8.2507 -2.7376 0.6044 13 7 7.6650 -2.8876 1.9389 14 6 7.9335 -4.0056 2.6827 15 1 8.5766 -4.7769 2.2854 16 6 7.3790 -4.1474 3.9473 17 7 7.6366 -5.2221 4.6621 18 14 6.2673 -2.8129 4.6347 19 1 4.8597 -3.0981 4.2572 20 1 6.3866 -2.7830 6.1146 21 1 6.6718 -1.4966 4.0788 22 7 3.5218 -1.2093 0.0002 23 6 2.2066 -1.1960 0.0003 24 6 1.4501 -2.4994 -0.0004 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6847 2.1420 -0.0004 29 1 4.1693 2.0650 0.0110 30 1 5.8108 -2.1648 0.0040 31 1 7.9802 -0.3648 -1.8804 32 1 9.3933 -1.3582 -1.4502 33 1 7.9021 -2.1367 -2.0315 34 1 7.9234 -3.5609 -0.0306 35 1 9.3379 -2.7483 0.6815 36 1 7.0871 -2.1949 2.2955 37 1 7.2489 -5.3215 5.5456 38 1 1.2678 -2.8142 1.0272 39 1 0.4981 -2.3667 -0.5141 40 1 2.0375 -3.2601 -0.5146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754235474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:14 Heat of formation + Delta-G solvation = 3.331634 kcal Electronic energy + Delta-G solvation = -21419.907296 eV Core-core repulsion = 18234.726176 eV Total energy + Delta-G solvation = -3185.181120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80990 -39.18638 -36.33330 -34.18676 -33.71110 -33.14812 -31.41140 -30.31144 -28.54498 -27.47810 -25.94403 -23.55980 -22.61123 -22.01253 -20.87214 -20.22219 -18.21355 -17.46240 -16.72150 -15.80172 -15.38297 -15.29809 -14.77186 -14.67513 -14.31559 -13.96358 -13.66585 -13.43884 -13.16849 -12.99666 -12.82805 -12.61800 -12.44031 -12.35103 -12.26118 -12.14331 -11.83312 -11.68072 -11.07606 -10.86497 -10.48314 -10.19153 -10.11487 -9.93502 -9.59532 -9.52566 -9.02000 -8.91313 -8.74832 -7.24096 -5.76754 -3.12213 0.54672 1.06652 2.77314 3.26594 3.39288 3.44733 3.46245 3.79039 4.00177 4.43649 4.58210 4.60492 4.61697 4.78739 5.05080 5.12917 5.18974 5.31799 5.36807 5.40807 5.42833 5.49710 5.51811 5.59747 5.64915 5.85559 5.86575 5.89252 5.95811 6.01739 6.07801 6.32619 6.40935 6.46546 6.61552 6.83627 7.56988 7.87100 7.98762 8.37097 8.42371 9.21010 9.93720 10.13239 11.41547 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.005819 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.321541 B = 4810.668578 C = 5956.975229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.116 4.116 5 C 0.081 3.919 6 C 0.569 3.431 7 O -0.542 6.542 8 N -0.693 5.693 9 C 0.127 3.873 10 H 0.089 0.911 11 C -0.156 4.156 12 C 0.149 3.851 13 N -0.755 5.755 14 C -0.244 4.244 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.933 5.933 18 Si 0.880 3.120 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.279 1.279 22 N -0.451 5.451 23 C 0.127 3.873 24 C -0.109 4.109 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.415 0.585 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.363 0.637 37 H 0.259 0.741 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.311 11.304 -13.379 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.137 4.137 5 C -0.057 4.057 6 C 0.353 3.647 7 O -0.419 6.419 8 N -0.344 5.344 9 C 0.022 3.978 10 H 0.107 0.893 11 C -0.215 4.215 12 C 0.022 3.978 13 N -0.401 5.401 14 C -0.374 4.374 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.581 5.581 18 Si 0.710 3.290 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.205 1.205 22 N -0.162 5.162 23 C -0.014 4.014 24 C -0.166 4.166 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.165 0.835 30 H 0.252 0.748 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.196 0.804 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.225 10.988 -13.310 21.744 hybrid contribution -1.436 1.346 0.752 2.107 sum -14.661 12.334 -12.558 22.907 Atomic orbital electron populations 1.20858 0.89944 1.03380 1.02964 1.20941 0.97737 0.93596 0.99978 1.21474 0.93595 0.98311 0.97497 1.22084 0.94869 0.99012 0.97756 1.21191 0.94365 0.89584 1.00576 1.17880 0.85726 0.84198 0.76866 1.90750 1.65852 1.34240 1.51069 1.45948 1.07839 1.08603 1.72017 1.21400 0.79026 1.00465 0.96900 0.89340 1.22085 1.01476 1.02022 0.95940 1.20968 0.97147 0.92679 0.87039 1.42715 1.59017 1.23251 1.15155 1.19052 1.25229 0.96292 0.96825 0.89046 1.24622 1.00220 0.97106 0.96819 1.69694 1.48568 1.27634 1.12187 0.86608 0.81488 0.82424 0.78443 1.21003 1.21670 1.20479 1.67420 1.08110 1.30390 1.10318 1.21186 0.89149 0.95356 0.95664 1.20828 0.99136 0.92970 1.03652 0.90470 0.91201 0.90492 0.84193 0.83477 0.74830 0.92379 0.91323 0.92312 0.94782 0.93859 0.80429 0.93061 0.89954 0.90311 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.62 36.00 0.35 -0.39 16 2 C -0.12 -1.23 5.91 -104.36 -0.62 -1.84 16 3 C -0.08 -0.85 9.85 -39.30 -0.39 -1.24 16 4 C -0.12 -1.52 9.63 -39.05 -0.38 -1.89 16 5 C 0.08 1.28 6.75 -83.01 -0.56 0.72 16 6 C 0.57 10.02 7.78 -12.18 -0.09 9.93 16 7 O -0.54 -10.48 15.99 5.35 0.09 -10.40 16 8 N -0.69 -11.95 4.51 -54.65 -0.25 -12.20 16 9 C 0.13 2.14 2.73 -67.93 -0.19 1.96 16 10 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 11 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 12 C 0.15 2.89 5.82 -4.04 -0.02 2.87 16 13 N -0.76 -18.41 5.24 -59.91 -0.31 -18.72 16 14 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 15 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -29.64 13.97 55.49 0.78 -28.86 16 18 Si 0.88 23.09 27.73 -169.99 -4.71 18.37 16 19 H -0.28 -7.36 7.11 56.52 0.40 -6.95 16 20 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 21 H -0.28 -7.16 6.52 56.52 0.37 -6.79 16 22 N -0.45 -6.88 9.45 -6.06 -0.06 -6.94 16 23 C 0.13 1.58 6.78 -82.60 -0.56 1.01 16 24 C -0.11 -1.04 9.77 36.01 0.35 -0.69 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.36 8.09 -51.92 -0.42 -0.06 16 27 H 0.08 0.41 5.95 -51.93 -0.31 0.10 16 28 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.15 1.80 7.64 -52.49 -0.40 1.40 16 30 H 0.41 7.17 7.93 -40.82 -0.32 6.84 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.36 8.98 5.20 -40.82 -0.21 8.76 16 37 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.52 5.93 -51.93 -0.31 0.22 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -34.42 335.59 -7.18 -41.60 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.76 Total: 10.48 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.01 Total: 1.62 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: 0.16 Total: -66.73 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.42 -7.18 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754235474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.931 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds