Wall clock time and date at job start Thu Apr 9 2020 13:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46993 * 2 1 4 4 C 1.50701 * 109.47042 * 120.00073 * 2 1 3 5 5 C 1.38757 * 120.01197 * 274.97982 * 4 2 1 6 6 C 1.38638 * 118.01943 * 180.02562 * 5 4 2 7 7 C 1.39267 * 117.91911 * 359.97438 * 6 5 4 8 8 O 1.35697 * 120.13542 * 180.02562 * 7 6 5 9 9 C 1.42906 * 116.99730 * 179.97438 * 8 7 6 10 10 C 1.53926 * 113.73273 * 246.73116 * 9 8 7 11 11 N 1.47957 * 86.17992 * 221.92139 * 10 9 8 12 12 C 1.46909 * 111.00073 * 137.58379 * 11 10 9 13 13 C 1.50692 * 109.47108 * 70.64165 * 12 11 10 14 14 H 1.08002 * 120.00190 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00053 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99721 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99925 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46920 * 60.00717 * 17 15 13 19 19 H 1.48504 * 109.46933 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47334 * 300.00194 * 17 15 13 21 21 C 1.47955 * 90.76101 * 24.68987 * 11 10 9 22 22 N 1.32330 * 119.72391 * 0.02562 * 7 6 5 23 23 N 1.28354 * 122.10095 * 359.97438 * 22 7 6 24 24 H 1.09000 * 109.47594 * 299.99828 * 1 2 3 25 25 H 1.09007 * 109.47521 * 60.00006 * 1 2 3 26 26 H 1.09007 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47144 * 239.99992 * 2 1 3 28 28 H 1.08997 * 109.47267 * 299.99858 * 3 2 1 29 29 H 1.09004 * 109.47451 * 60.00002 * 3 2 1 30 30 H 1.08997 * 109.47284 * 180.02562 * 3 2 1 31 31 H 1.08008 * 120.99230 * 0.02562 * 5 4 2 32 32 H 1.08007 * 121.03670 * 180.02562 * 6 5 4 33 33 H 1.08996 * 112.93419 * 18.43980 * 9 8 7 34 34 H 1.09010 * 113.76430 * 336.23810 * 10 9 8 35 35 H 1.09003 * 113.76427 * 107.60365 * 10 9 8 36 36 H 1.09003 * 109.46816 * 190.63919 * 12 11 10 37 37 H 1.08994 * 109.46924 * 310.63922 * 12 11 10 38 38 H 0.96998 * 119.99297 * 179.97438 * 16 15 13 39 39 H 1.09002 * 113.76086 * 220.99119 * 21 11 10 40 40 H 1.09005 * 113.76104 * 89.63338 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1653 -0.0184 2.4258 6 6 2.6316 -0.7123 3.5317 7 6 2.9370 -2.0618 3.3736 8 8 3.3963 -2.7843 4.4264 9 6 3.6880 -4.1630 4.1892 10 6 2.7522 -5.1314 4.9346 11 7 3.9666 -5.9254 5.2243 12 6 3.9640 -6.4038 6.6133 13 6 2.9117 -7.4703 6.7752 14 1 2.3058 -7.7638 5.9308 15 6 2.7232 -8.0722 8.0013 16 7 3.4615 -7.7152 9.0295 17 14 1.4184 -9.3938 8.2022 18 1 1.7159 -10.5261 7.2887 19 1 1.4158 -9.8775 9.6063 20 1 0.0858 -8.8280 7.8717 21 6 4.8128 -4.7203 5.0801 22 7 2.7775 -2.6366 2.1924 23 7 2.3455 -1.9894 1.1716 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.9131 1.0297 2.4926 32 1 2.7534 -0.2218 4.4862 33 1 3.8103 -4.3954 3.1314 34 1 2.2884 -4.6990 5.8213 35 1 2.0393 -5.6402 4.2857 36 1 4.9422 -6.8187 6.8565 37 1 3.7450 -5.5726 7.2834 38 1 3.3286 -8.1385 9.8921 39 1 5.7465 -4.9005 4.5473 40 1 4.9519 -4.1676 6.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233886626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:38 Heat of formation + Delta-G solvation = 49.780489 kcal Electronic energy + Delta-G solvation = -20765.255459 eV Core-core repulsion = 17582.088512 eV Total energy + Delta-G solvation = -3183.166947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38870 -39.62407 -37.49162 -35.97373 -33.14678 -32.79448 -30.69476 -29.16675 -27.61038 -25.84390 -25.44199 -24.65470 -24.26735 -21.71087 -21.02970 -19.54014 -18.58759 -17.57072 -16.50609 -16.30250 -15.86494 -15.27680 -14.91043 -14.66970 -14.31390 -14.27087 -14.16949 -13.62469 -13.38805 -12.80672 -12.58577 -12.49839 -12.34951 -12.10453 -11.93498 -11.59121 -11.52953 -11.39708 -11.03246 -10.91443 -10.71245 -10.46744 -10.31420 -10.24903 -9.72662 -9.60993 -9.20303 -8.89776 -8.51033 -7.89145 -6.06760 -4.08859 0.63594 0.90870 2.91176 3.32676 3.36114 3.39809 3.41259 3.82977 4.19594 4.33633 4.40480 4.59295 4.70057 4.71842 4.75866 4.80649 4.88065 5.09616 5.23757 5.28077 5.29368 5.42792 5.46160 5.51165 5.60873 5.67391 5.75414 5.88130 5.94274 6.02149 6.04680 6.12881 6.32765 6.40983 6.61092 7.15831 7.26434 7.58831 7.83661 8.05808 8.37274 8.62085 8.97929 9.55632 11.04498 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.003042 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.927730 B = 9202.884619 C = 9562.914873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.149 4.149 4 C 0.034 3.966 5 C -0.084 4.084 6 C -0.138 4.138 7 C 0.270 3.730 8 O -0.289 6.289 9 C 0.046 3.954 10 C 0.013 3.987 11 N -0.470 5.470 12 C 0.163 3.837 13 C -0.513 4.513 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.003 3.997 22 N -0.297 5.297 23 N -0.203 5.203 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.001 0.999 38 H 0.263 0.737 39 H 0.089 0.911 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 20.407 -15.262 25.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 C -0.206 4.206 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.167 4.167 7 C 0.085 3.915 8 O -0.192 6.192 9 C -0.010 4.010 10 C -0.116 4.116 11 N -0.195 5.195 12 C 0.037 3.963 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.728 3.272 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.126 4.126 22 N -0.153 5.153 23 N -0.046 5.046 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.771 18.392 -15.958 24.507 hybrid contribution -0.896 1.024 1.799 2.256 sum -3.666 19.416 -14.159 24.309 Atomic orbital electron populations 1.21834 0.93475 1.02645 1.02175 1.19901 0.96227 0.95218 0.94281 1.21934 1.01462 0.94783 1.02470 1.22666 0.99676 0.92713 0.96327 1.22146 0.95714 1.01732 0.91661 1.21615 1.01383 0.92251 1.01482 1.21575 0.90895 0.90404 0.88660 1.86408 1.76991 1.25138 1.30646 1.25104 0.98222 0.75471 1.02245 1.24182 0.95444 0.92596 0.99354 1.68607 1.02859 1.19269 1.28804 1.20225 0.98492 0.95520 0.82016 1.21050 1.18327 1.20214 0.95522 0.91944 1.24993 0.96497 0.97246 0.95769 1.69948 1.39841 1.42835 1.01071 0.86524 0.81798 0.81911 0.76993 1.20049 1.21269 1.20224 1.24251 0.97046 0.92510 0.98763 1.73044 1.15574 1.30284 0.96379 1.72709 1.05592 1.06619 1.19658 0.92497 0.91661 0.92065 0.88888 0.91533 0.92168 0.92245 0.82864 0.82684 0.86115 0.90629 0.89582 0.94649 0.98108 0.92771 0.89312 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 2 C -0.04 -0.27 3.25 -91.77 -0.30 -0.57 16 3 C -0.15 -0.78 8.63 37.16 0.32 -0.45 16 4 C 0.03 0.36 5.87 -82.41 -0.48 -0.12 16 5 C -0.08 -0.77 9.26 -39.24 -0.36 -1.13 16 6 C -0.14 -1.53 10.16 -39.05 -0.40 -1.92 16 7 C 0.27 4.01 7.57 -16.95 -0.13 3.88 16 8 O -0.29 -4.76 10.15 -18.79 -0.19 -4.95 16 9 C 0.05 0.81 4.37 -25.81 -0.11 0.69 16 10 C 0.01 0.27 7.29 -2.77 -0.02 0.25 16 11 N -0.47 -10.57 6.25 -240.02 -1.50 -12.07 16 12 C 0.16 4.34 4.58 -4.97 -0.02 4.32 16 13 C -0.51 -14.72 8.84 -34.44 -0.30 -15.02 16 14 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.00 0.06 7.81 -2.77 -0.02 0.04 16 22 N -0.30 -4.74 9.78 30.50 0.30 -4.45 16 23 N -0.20 -2.91 11.42 33.60 0.38 -2.53 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.25 6.55 -51.93 -0.34 -0.09 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.15 0.83 6.41 -52.48 -0.34 0.50 16 32 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.12 2.10 6.89 -51.93 -0.36 1.74 16 34 H 0.08 1.61 7.78 -51.92 -0.40 1.21 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 36 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.00 0.03 7.69 -51.93 -0.40 -0.37 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -32.18 334.58 -7.85 -40.03 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.01 Total: -2.71 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.59 Total: -9.12 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.08 Total: -45.21 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.19 Total: -4.95 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.18 -7.85 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233886626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.815 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds