Wall clock time and date at job start Thu Apr 9 2020 13:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 120.00518 * 2 1 4 4 N 1.46496 * 109.47498 * 124.99561 * 3 2 1 5 5 C 1.46500 * 120.00327 * 274.88943 * 4 3 2 6 6 C 1.50696 * 109.47231 * 269.99716 * 5 4 3 7 7 H 1.08000 * 119.99677 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99986 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99718 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00202 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46796 * 90.00175 * 10 8 6 12 12 H 1.48499 * 109.47415 * 210.00357 * 10 8 6 13 13 H 1.48506 * 109.47104 * 330.00612 * 10 8 6 14 14 C 1.34782 * 120.00171 * 94.88585 * 4 3 2 15 15 O 1.21595 * 120.00293 * 185.71911 * 14 4 3 16 16 C 1.47428 * 119.99409 * 5.71086 * 14 4 3 17 17 C 1.38052 * 126.41479 * 54.02966 * 16 14 4 18 18 N 1.34256 * 107.41329 * 180.27950 * 17 16 14 19 19 H 0.97002 * 125.75053 * 179.71189 * 18 17 16 20 20 N 1.39928 * 108.49714 * 359.58187 * 18 17 16 21 21 C 1.30446 * 108.89533 * 0.43002 * 20 18 17 22 22 C 1.50700 * 125.99118 * 179.78275 * 21 20 18 23 23 C 1.53005 * 109.47206 * 269.95617 * 22 21 20 24 24 C 1.52999 * 109.47198 * 179.97438 * 23 22 21 25 25 H 1.07995 * 120.00561 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99611 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.00017 * 179.97438 * 2 1 3 28 28 H 1.09012 * 109.46894 * 5.00144 * 3 2 1 29 29 H 1.08997 * 109.47699 * 245.00092 * 3 2 1 30 30 H 1.08998 * 109.47241 * 30.00066 * 5 4 3 31 31 H 1.09004 * 109.47133 * 149.99587 * 5 4 3 32 32 H 0.97000 * 119.99982 * 180.02562 * 9 8 6 33 33 H 1.07999 * 126.28840 * 0.02562 * 17 16 14 34 34 H 1.08999 * 109.47180 * 29.95362 * 22 21 20 35 35 H 1.09001 * 109.47762 * 149.95143 * 22 21 20 36 36 H 1.08999 * 109.46843 * 299.99952 * 23 22 21 37 37 H 1.08999 * 109.46819 * 59.99574 * 23 22 21 38 38 H 1.08997 * 109.46947 * 179.97438 * 24 23 22 39 39 H 1.08999 * 109.47534 * 299.99957 * 24 23 22 40 40 H 1.09001 * 109.46744 * 60.00077 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5291 1.7645 2.4517 6 6 2.7169 3.2535 2.5873 7 1 3.1405 3.8208 1.7717 8 6 2.3490 3.8915 3.7529 9 7 2.5125 5.1911 3.8710 10 14 1.6171 2.9102 5.1638 11 1 2.7062 2.4405 6.0574 12 1 0.6823 3.7706 5.9327 13 1 0.8810 1.7393 4.6230 14 6 4.2771 0.9584 0.9578 15 8 5.0226 0.8807 1.9153 16 6 4.7769 0.6440 -0.3931 17 6 4.7000 1.4581 -1.5054 18 7 5.2644 0.7958 -2.5278 19 1 5.3493 1.1230 -3.4370 20 7 5.7120 -0.4447 -2.0601 21 6 5.4239 -0.5470 -0.7919 22 6 5.7287 -1.7281 0.0930 23 6 4.5550 -2.7091 0.0565 24 6 4.8647 -3.9085 0.9544 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6214 1.4026 -0.9313 30 1 1.4728 1.5199 2.5633 31 1 3.1038 1.2539 3.2245 32 1 2.2540 5.6399 4.6912 33 1 4.2623 2.4446 -1.5465 34 1 6.6299 -2.2266 -0.2639 35 1 5.8841 -1.3854 1.1159 36 1 3.6538 -2.2106 0.4134 37 1 4.3997 -3.0519 -0.9665 38 1 4.0284 -4.6071 0.9287 39 1 5.7659 -4.4068 0.5971 40 1 5.0203 -3.5659 1.9774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261246656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:39 Heat of formation + Delta-G solvation = 51.545529 kcal Electronic energy + Delta-G solvation = -21993.442241 eV Core-core repulsion = 18810.351832 eV Total energy + Delta-G solvation = -3183.090409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31204 -38.62813 -35.72655 -35.16997 -33.14615 -32.12104 -31.52435 -30.42466 -27.99634 -27.04969 -25.58031 -23.30789 -22.04226 -21.48810 -19.90696 -19.81968 -18.89354 -17.41568 -16.87411 -16.08077 -15.63533 -15.19022 -14.68476 -14.52561 -14.34896 -14.23316 -13.79261 -13.35024 -13.10762 -12.90384 -12.59313 -12.28640 -12.00913 -11.64910 -11.59793 -11.49350 -11.30834 -11.13152 -10.91016 -10.87512 -10.54218 -10.48685 -10.12629 -9.57847 -9.42498 -9.22262 -9.11671 -8.58776 -8.48351 -7.68614 -6.08420 -4.06944 1.76700 2.42148 2.47561 2.78650 3.31062 3.37178 3.39522 3.58993 4.02069 4.41117 4.58406 4.84512 5.05959 5.10701 5.14991 5.21944 5.26462 5.35127 5.42278 5.51347 5.64808 5.79065 5.80834 5.81810 5.88960 5.98803 6.05705 6.15821 6.27589 6.32482 6.55867 6.76703 6.78424 6.89919 7.00587 7.18134 7.40544 7.62484 7.64762 8.29088 8.47504 8.93020 9.03077 9.52597 11.04845 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.005733 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.121712 B = 4882.474027 C = 5089.090104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.162 4.162 3 C 0.134 3.866 4 N -0.584 5.584 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.588 3.412 15 O -0.535 6.535 16 C -0.263 4.263 17 C 0.092 3.908 18 N -0.468 5.468 19 H 0.440 0.560 20 N -0.301 5.301 21 C 0.124 3.876 22 C -0.047 4.047 23 C -0.115 4.115 24 C -0.150 4.150 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.186 0.814 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -12.735 -12.700 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.182 4.182 3 C 0.010 3.990 4 N -0.314 5.314 5 C 0.097 3.903 6 C -0.567 4.567 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.374 3.626 15 O -0.412 6.412 16 C -0.278 4.278 17 C -0.058 4.058 18 N -0.173 5.173 19 H 0.284 0.716 20 N -0.124 5.124 21 C -0.043 4.043 22 C -0.086 4.086 23 C -0.153 4.153 24 C -0.208 4.208 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.203 0.797 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.901 -13.168 -13.024 18.542 hybrid contribution -0.810 0.498 0.872 1.291 sum 0.091 -12.669 -12.152 17.555 Atomic orbital electron populations 1.23814 0.95830 1.01721 1.01164 1.23428 0.96229 0.99177 0.99331 1.20678 0.92931 0.95216 0.90136 1.47773 1.08147 1.64208 1.11297 1.19652 0.94727 0.96078 0.79841 1.21333 1.42330 0.90704 1.02357 0.90761 1.24833 0.95217 0.94775 0.98081 1.69892 1.48023 1.08391 1.27355 0.86876 0.79643 0.80366 0.83027 1.19852 1.21118 1.18938 1.17228 0.81901 0.76862 0.86592 1.90734 1.55992 1.52826 1.41686 1.20456 1.14116 0.97483 0.95736 1.23060 0.96866 0.98720 0.87192 1.45993 1.46798 1.13360 1.11153 0.71553 1.77021 1.23480 0.99672 1.12241 1.22287 0.95165 0.95442 0.91428 1.20176 0.98960 0.90897 0.98589 1.21446 0.98016 0.95670 1.00192 1.21754 1.01321 0.97570 1.00148 0.88839 0.88280 0.87821 0.89598 0.90295 0.95168 0.94378 0.92583 0.79676 0.90294 0.88627 0.91731 0.91963 0.92715 0.92715 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 14.32 29.02 0.42 -1.96 16 2 C -0.16 -2.31 9.84 -36.03 -0.35 -2.66 16 3 C 0.13 2.14 5.78 -5.20 -0.03 2.11 16 4 N -0.58 -11.95 2.44 -177.71 -0.43 -12.38 16 5 C 0.22 5.29 4.29 -5.20 -0.02 5.27 16 6 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 16 7 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 10 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 14 C 0.59 12.27 7.27 -12.52 -0.09 12.18 16 15 O -0.54 -13.33 15.98 5.28 0.08 -13.25 16 16 C -0.26 -4.39 5.05 -105.06 -0.53 -4.92 16 17 C 0.09 1.21 9.88 -16.56 -0.16 1.04 16 18 N -0.47 -5.30 7.29 30.85 0.22 -5.08 16 19 H 0.44 3.21 8.96 -182.73 -1.64 1.57 16 20 N -0.30 -4.29 12.63 33.89 0.43 -3.86 16 21 C 0.12 1.92 6.52 -82.02 -0.53 1.38 16 22 C -0.05 -0.65 5.61 -27.88 -0.16 -0.80 16 23 C -0.11 -1.38 5.92 -26.73 -0.16 -1.53 16 24 C -0.15 -1.54 9.91 37.16 0.37 -1.18 16 25 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 26 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 27 H 0.10 1.45 7.48 -52.48 -0.39 1.06 16 28 H 0.09 1.40 7.76 -51.92 -0.40 1.00 16 29 H 0.08 1.08 4.66 -51.93 -0.24 0.84 16 30 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 31 H 0.04 1.00 6.78 -51.93 -0.35 0.64 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.19 1.99 7.77 -52.49 -0.41 1.58 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.50 7.38 -51.93 -0.38 1.11 16 36 H 0.06 0.85 7.57 -51.93 -0.39 0.46 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -34.67 338.78 -7.30 -41.97 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.12 Total: 1.62 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.70 Total: -4.34 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.99 Total: -47.94 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.67 -7.30 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261246656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.513 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds