Wall clock time and date at job start Thu Apr 9 2020 13:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 120.00518 * 2 1 4 4 N 1.46496 * 109.47498 * 124.99561 * 3 2 1 5 5 C 1.46500 * 120.00327 * 274.88943 * 4 3 2 6 6 C 1.50696 * 109.47231 * 269.99716 * 5 4 3 7 7 H 1.08000 * 119.99677 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99986 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99718 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00202 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46796 * 90.00175 * 10 8 6 12 12 H 1.48499 * 109.47415 * 210.00357 * 10 8 6 13 13 H 1.48506 * 109.47104 * 330.00612 * 10 8 6 14 14 C 1.34782 * 120.00171 * 94.88585 * 4 3 2 15 15 O 1.21595 * 120.00293 * 185.71911 * 14 4 3 16 16 C 1.47428 * 119.99409 * 5.71086 * 14 4 3 17 17 C 1.38052 * 126.41479 * 54.02966 * 16 14 4 18 18 N 1.34256 * 107.41329 * 180.27950 * 17 16 14 19 19 H 0.97002 * 125.75053 * 179.71189 * 18 17 16 20 20 N 1.39928 * 108.49714 * 359.58187 * 18 17 16 21 21 C 1.30446 * 108.89533 * 0.43002 * 20 18 17 22 22 C 1.50700 * 125.99118 * 179.78275 * 21 20 18 23 23 C 1.53005 * 109.47206 * 269.95617 * 22 21 20 24 24 C 1.52999 * 109.47198 * 179.97438 * 23 22 21 25 25 H 1.07995 * 120.00561 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99611 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.00017 * 179.97438 * 2 1 3 28 28 H 1.09012 * 109.46894 * 5.00144 * 3 2 1 29 29 H 1.08997 * 109.47699 * 245.00092 * 3 2 1 30 30 H 1.08998 * 109.47241 * 30.00066 * 5 4 3 31 31 H 1.09004 * 109.47133 * 149.99587 * 5 4 3 32 32 H 0.97000 * 119.99982 * 180.02562 * 9 8 6 33 33 H 1.07999 * 126.28840 * 0.02562 * 17 16 14 34 34 H 1.08999 * 109.47180 * 29.95362 * 22 21 20 35 35 H 1.09001 * 109.47762 * 149.95143 * 22 21 20 36 36 H 1.08999 * 109.46843 * 299.99952 * 23 22 21 37 37 H 1.08999 * 109.46819 * 59.99574 * 23 22 21 38 38 H 1.08997 * 109.46947 * 179.97438 * 24 23 22 39 39 H 1.08999 * 109.47534 * 299.99957 * 24 23 22 40 40 H 1.09001 * 109.46744 * 60.00077 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5291 1.7645 2.4517 6 6 2.7169 3.2535 2.5873 7 1 3.1405 3.8208 1.7717 8 6 2.3490 3.8915 3.7529 9 7 2.5125 5.1911 3.8710 10 14 1.6171 2.9102 5.1638 11 1 2.7062 2.4405 6.0574 12 1 0.6823 3.7706 5.9327 13 1 0.8810 1.7393 4.6230 14 6 4.2771 0.9584 0.9578 15 8 5.0226 0.8807 1.9153 16 6 4.7769 0.6440 -0.3931 17 6 4.7000 1.4581 -1.5054 18 7 5.2644 0.7958 -2.5278 19 1 5.3493 1.1230 -3.4370 20 7 5.7120 -0.4447 -2.0601 21 6 5.4239 -0.5470 -0.7919 22 6 5.7287 -1.7281 0.0930 23 6 4.5550 -2.7091 0.0565 24 6 4.8647 -3.9085 0.9544 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6214 1.4026 -0.9313 30 1 1.4728 1.5199 2.5633 31 1 3.1038 1.2539 3.2245 32 1 2.2540 5.6399 4.6912 33 1 4.2623 2.4446 -1.5465 34 1 6.6299 -2.2266 -0.2639 35 1 5.8841 -1.3854 1.1159 36 1 3.6538 -2.2106 0.4134 37 1 4.3997 -3.0519 -0.9665 38 1 4.0284 -4.6071 0.9287 39 1 5.7659 -4.4068 0.5971 40 1 5.0203 -3.5659 1.9774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261246656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:39 Heat of formation + Delta-G solvation = 28.257750 kcal Electronic energy + Delta-G solvation = -21994.452074 eV Core-core repulsion = 18810.351832 eV Total energy + Delta-G solvation = -3184.100243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.47470 -40.20734 -37.22582 -36.19651 -35.02729 -33.73598 -32.57110 -31.82635 -29.75500 -28.05801 -26.95369 -25.06126 -23.16521 -22.78630 -21.13745 -21.01994 -20.10447 -19.04126 -18.71251 -17.59042 -17.13374 -16.37878 -16.15445 -15.78522 -15.67802 -15.35660 -15.27414 -14.74345 -14.49001 -14.20686 -14.13391 -13.80593 -13.53782 -13.04300 -12.98052 -12.81777 -12.51716 -12.45551 -12.29167 -12.14533 -11.99474 -11.91045 -11.71313 -11.53958 -10.80833 -10.78446 -10.50011 -10.32033 -9.74638 -9.35125 -8.31489 -6.35526 0.64514 1.21465 1.31227 1.36026 1.38359 1.46693 1.81225 2.09800 2.33237 2.52258 3.03377 3.46094 3.75763 3.97840 4.06991 4.13919 4.17304 4.23134 4.37949 4.43269 4.46537 4.66840 4.80460 4.80873 4.83970 4.86807 4.98542 4.99607 5.08076 5.13045 5.30418 5.40779 5.43724 5.48775 5.56976 5.73766 5.93106 6.27340 6.28035 6.55013 6.65382 6.72484 7.24498 7.44281 8.84930 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.005733 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.121712 B = 4882.474027 C = 5089.090104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.181 4.181 3 C 0.132 3.868 4 N -0.588 5.588 5 C 0.228 3.772 6 C -0.533 4.533 7 H 0.036 0.964 8 C 0.016 3.984 9 N -0.943 5.943 10 Si 0.939 3.061 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.240 1.240 14 C 0.586 3.414 15 O -0.590 6.590 16 C -0.299 4.299 17 C 0.115 3.885 18 N -0.442 5.442 19 H 0.461 0.539 20 N -0.307 5.307 21 C 0.119 3.881 22 C -0.047 4.047 23 C -0.107 4.107 24 C -0.148 4.148 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.018 0.982 32 H 0.268 0.732 33 H 0.211 0.789 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -14.436 -14.245 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.200 4.200 3 C 0.010 3.990 4 N -0.317 5.317 5 C 0.106 3.894 6 C -0.571 4.571 7 H 0.055 0.945 8 C -0.183 4.183 9 N -0.583 5.583 10 Si 0.762 3.238 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.163 1.163 14 C 0.375 3.625 15 O -0.471 6.471 16 C -0.314 4.314 17 C -0.037 4.037 18 N -0.149 5.149 19 H 0.310 0.690 20 N -0.130 5.130 21 C -0.048 4.048 22 C -0.087 4.087 23 C -0.146 4.146 24 C -0.205 4.205 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.387 -14.886 -14.658 20.895 hybrid contribution -0.392 1.108 1.218 1.692 sum -0.779 -13.779 -13.441 19.264 Atomic orbital electron populations 1.24051 0.95264 1.03003 0.98264 1.23264 0.96715 0.98128 1.01927 1.20885 0.92450 0.96253 0.89367 1.47804 1.09028 1.63681 1.11158 1.19281 0.95122 0.93194 0.81782 1.21546 1.41594 0.92600 1.01388 0.94543 1.25739 0.95747 0.95761 1.01004 1.70030 1.49564 1.10273 1.28435 0.85835 0.78989 0.79665 0.79262 1.20281 1.19964 1.16338 1.17790 0.81411 0.75567 0.87725 1.90688 1.57306 1.55207 1.43881 1.20184 1.17064 0.99536 0.94663 1.23300 0.95280 0.98865 0.86303 1.45993 1.44906 1.12188 1.11828 0.69007 1.76994 1.23679 1.00810 1.11542 1.22438 0.94959 0.95505 0.91929 1.20192 1.00458 0.91085 0.96941 1.21387 0.96474 0.95636 1.01077 1.21741 1.02560 0.97120 0.99085 0.86612 0.87884 0.87708 0.90177 0.88092 0.93627 0.96409 0.92312 0.77200 0.88762 0.91321 0.93371 0.90873 0.91380 0.91313 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 14.32 67.79 0.97 -2.82 16 2 C -0.18 -4.82 9.84 25.65 0.25 -4.57 16 3 C 0.13 4.09 5.78 85.63 0.50 4.59 16 4 N -0.59 -24.27 2.44 -834.40 -2.04 -26.31 16 5 C 0.23 11.22 4.29 85.63 0.37 11.59 16 6 C -0.53 -30.89 9.94 25.60 0.25 -30.64 16 7 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 8 C 0.02 0.92 5.47 84.66 0.46 1.38 16 9 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 10 Si 0.94 44.45 27.47 68.60 1.88 46.33 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 14 C 0.59 25.07 7.27 86.66 0.63 25.70 16 15 O -0.59 -30.81 15.98 -4.01 -0.06 -30.87 16 16 C -0.30 -9.88 5.05 -20.15 -0.10 -9.98 16 17 C 0.12 2.79 9.88 84.28 0.83 3.62 16 18 N -0.44 -8.79 7.29 -56.31 -0.41 -9.20 16 19 H 0.46 5.09 8.96 -213.43 -1.91 3.18 16 20 N -0.31 -8.10 12.63 -46.68 -0.59 -8.69 16 21 C 0.12 3.57 6.52 43.52 0.28 3.85 16 22 C -0.05 -1.30 5.61 29.85 0.17 -1.14 16 23 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 24 C -0.15 -2.86 9.91 71.98 0.71 -2.15 16 25 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 26 H 0.10 2.25 7.84 -2.91 -0.02 2.23 16 27 H 0.10 2.79 7.48 -2.91 -0.02 2.76 16 28 H 0.08 2.55 7.76 -2.38 -0.02 2.53 16 29 H 0.10 2.59 4.66 -2.39 -0.01 2.58 16 30 H 0.05 2.09 7.13 -2.39 -0.02 2.08 16 31 H 0.02 0.95 6.78 -2.39 -0.02 0.93 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.21 3.97 7.77 -2.91 -0.02 3.94 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.26 7.38 -2.39 -0.02 2.24 16 36 H 0.05 1.26 7.57 -2.39 -0.02 1.24 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.91 338.78 3.66 -74.25 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.93 Total: 15.94 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 5.51 Total: -2.86 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -2.74 Total: -102.79 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.06 Total: -30.87 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -77.91 3.66 -74.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261246656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.507 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds