Wall clock time and date at job start Thu Apr 9 2020 13:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47292 * 2 1 4 4 C 1.53004 * 109.47231 * 239.99914 * 2 1 3 5 5 C 1.50697 * 109.47082 * 120.00129 * 2 1 3 6 6 N 1.31792 * 119.08437 * 240.02075 * 5 2 1 7 7 C 1.32545 * 121.00911 * 179.75129 * 6 5 2 8 8 C 1.38121 * 119.20089 * 0.47953 * 7 6 5 9 9 C 1.39625 * 118.33216 * 359.50980 * 8 7 6 10 10 N 1.38541 * 120.53160 * 180.27105 * 9 8 7 11 11 C 1.47480 * 111.00029 * 301.52057 * 10 9 8 12 12 C 1.53511 * 87.92927 * 221.29269 * 11 10 9 13 13 O 1.42899 * 114.17467 * 272.37707 * 12 11 10 14 14 C 1.50704 * 114.16848 * 139.67099 * 12 11 10 15 15 H 1.08004 * 120.00167 * 266.16183 * 14 12 11 16 16 C 1.37873 * 120.00007 * 86.15863 * 14 12 11 17 17 N 1.31515 * 119.99889 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00036 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47431 * 90.00011 * 18 16 14 20 20 H 1.48506 * 109.47143 * 209.99989 * 18 16 14 21 21 H 1.48505 * 109.47142 * 329.99712 * 18 16 14 22 22 C 1.47476 * 110.99904 * 205.54726 * 10 9 8 23 23 N 1.31749 * 119.08224 * 59.99587 * 5 2 1 24 24 H 1.08991 * 109.47272 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.46547 * 59.99993 * 1 2 3 26 26 H 1.08999 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47187 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46797 * 300.00078 * 3 2 1 29 29 H 1.09003 * 109.46795 * 59.99844 * 3 2 1 30 30 H 1.08999 * 109.47143 * 300.00305 * 4 2 1 31 31 H 1.09000 * 109.46827 * 60.00256 * 4 2 1 32 32 H 1.08997 * 109.47175 * 180.02562 * 4 2 1 33 33 H 1.08001 * 120.39871 * 180.24199 * 7 6 5 34 34 H 1.08000 * 120.83096 * 179.79089 * 8 7 6 35 35 H 1.09000 * 113.47742 * 336.05796 * 11 10 9 36 36 H 1.09003 * 113.47790 * 106.53123 * 11 10 9 37 37 H 0.96707 * 113.99790 * 273.84324 * 13 12 11 38 38 H 0.97004 * 119.99697 * 180.02562 * 17 16 14 39 39 H 1.09002 * 113.47541 * 253.46740 * 22 10 9 40 40 H 1.09000 * 113.47869 * 23.94103 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 2.7885 -0.0525 2.0862 7 6 3.2470 -0.6385 3.1831 8 6 2.9320 -1.9619 3.4221 9 6 2.1285 -2.6295 2.4957 10 7 1.7799 -3.9558 2.6930 11 6 2.9793 -4.8077 2.7965 12 6 2.2474 -5.8468 1.9356 13 8 1.4411 -6.7611 2.6811 14 6 3.1189 -6.5196 0.9066 15 1 3.1657 -6.1299 -0.0996 16 6 3.8567 -7.6327 1.2496 17 7 3.7994 -8.1076 2.4747 18 14 4.9375 -8.4663 -0.0256 19 1 6.2944 -7.8639 0.0055 20 1 5.0327 -9.9168 0.2781 21 1 4.3445 -8.2810 -1.3745 22 6 1.4862 -4.6215 1.4102 23 7 1.7030 -1.9718 1.4209 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6768 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.8627 -0.0889 3.8797 34 1 3.2942 -2.4663 4.3057 35 1 3.8574 -4.3822 2.3108 36 1 3.1825 -5.1501 3.8113 37 1 1.9231 -7.5320 3.0108 38 1 4.3188 -8.8905 2.7162 39 1 0.4240 -4.8061 1.2500 40 1 1.9660 -4.1463 0.5545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320504126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:48 Heat of formation + Delta-G solvation = 34.677678 kcal Electronic energy + Delta-G solvation = -22073.009607 eV Core-core repulsion = 18889.187753 eV Total energy + Delta-G solvation = -3183.821854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21383 -39.27727 -36.55429 -34.71890 -32.81325 -32.17348 -30.99708 -27.96409 -27.21037 -27.05115 -25.58094 -25.01870 -23.71508 -22.22491 -19.55810 -18.85844 -17.67694 -17.16740 -16.38388 -15.22995 -15.18856 -15.02768 -14.81755 -14.40994 -14.04301 -13.91884 -13.63009 -13.35893 -12.88523 -12.26581 -12.21633 -12.13887 -12.01252 -11.58027 -11.55417 -11.43372 -11.09426 -10.95350 -10.94069 -10.82497 -10.55209 -10.49678 -10.33127 -10.12270 -9.60154 -9.33105 -8.94203 -8.77576 -8.39814 -8.04990 -6.39378 -4.49415 1.24055 1.43259 3.13663 3.21832 3.25603 3.85737 4.01601 4.16332 4.25860 4.55342 4.83143 5.00808 5.04080 5.07240 5.21363 5.39380 5.60698 5.62004 5.66746 5.68601 5.78959 5.85900 5.87799 5.90625 5.97805 6.05540 6.11083 6.17872 6.18916 6.35648 6.46015 6.47796 6.63359 6.73557 6.77425 7.18745 7.45128 7.64074 7.71885 7.83382 8.46980 8.53822 9.21549 9.52570 10.67148 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.004937 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.116420 B = 5669.878252 C = 6066.314268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 C -0.124 4.124 4 C -0.136 4.136 5 C 0.345 3.655 6 N -0.545 5.545 7 C 0.154 3.846 8 C -0.253 4.253 9 C 0.343 3.657 10 N -0.427 5.427 11 C -0.004 4.004 12 C 0.247 3.753 13 O -0.568 6.568 14 C -0.534 4.534 15 H 0.070 0.930 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.907 3.093 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.270 1.270 22 C 0.031 3.969 23 N -0.541 5.541 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.392 0.608 38 H 0.273 0.727 39 H 0.078 0.922 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 13.281 -2.172 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.000 4.000 3 C -0.182 4.182 4 C -0.194 4.194 5 C 0.076 3.924 6 N -0.262 5.262 7 C -0.009 4.009 8 C -0.278 4.278 9 C 0.102 3.898 10 N -0.143 5.143 11 C -0.131 4.131 12 C 0.205 3.795 13 O -0.380 6.380 14 C -0.573 4.573 15 H 0.088 0.912 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.195 1.195 22 C -0.096 4.096 23 N -0.260 5.260 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.180 0.820 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.248 0.752 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.098 13.965 -2.398 14.324 hybrid contribution 1.909 -1.164 0.167 2.242 sum -0.189 12.801 -2.232 12.996 Atomic orbital electron populations 1.21819 0.92808 1.03048 1.01561 1.19335 0.96080 0.94816 0.89771 1.21677 1.01649 0.93572 1.01306 1.21833 1.00958 1.01268 0.95314 1.22816 0.89074 0.86448 0.94088 1.68202 1.14037 1.39401 1.04549 1.22911 0.93552 0.91387 0.93004 1.22426 1.04493 0.97561 1.03342 1.21175 0.86628 0.94327 0.87647 1.65710 1.24486 0.96719 1.27382 1.24956 0.90614 0.94239 1.03279 1.19434 0.86590 0.85571 0.87875 1.86057 1.40401 1.38209 1.73343 1.21502 1.25526 1.12712 0.97513 0.91202 1.25073 0.96019 0.96235 0.95675 1.69277 1.42044 1.24528 1.17943 0.86347 0.80283 0.78582 0.81432 1.20359 1.20764 1.19482 1.24019 1.02297 0.93607 0.89655 1.68116 1.26698 1.10204 1.21009 0.92999 0.91879 0.91299 0.92091 0.92711 0.92186 0.91207 0.91876 0.92830 0.82024 0.83984 0.91216 0.90075 0.75151 0.91611 0.90345 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.00 0.03 0.92 -155.66 -0.14 -0.12 16 3 C -0.12 -1.42 7.67 37.16 0.28 -1.13 16 4 C -0.14 -1.71 8.37 37.16 0.31 -1.40 16 5 C 0.35 5.71 6.25 -157.24 -0.98 4.72 16 6 N -0.55 -8.67 9.00 -10.81 -0.10 -8.76 16 7 C 0.15 2.25 11.29 -17.29 -0.20 2.06 16 8 C -0.25 -4.19 9.46 -39.11 -0.37 -4.56 16 9 C 0.34 6.67 6.06 -154.77 -0.94 5.73 16 10 N -0.43 -9.16 6.47 -182.49 -1.18 -10.34 16 11 C 0.00 -0.09 6.53 -7.54 -0.05 -0.14 16 12 C 0.25 6.11 1.57 -91.24 -0.14 5.96 16 13 O -0.57 -14.90 13.54 -35.23 -0.48 -15.37 16 14 C -0.53 -13.82 8.68 -34.44 -0.30 -14.12 16 15 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 16 C 0.07 1.84 5.40 -17.82 -0.10 1.74 16 17 N -0.90 -23.13 11.02 55.43 0.61 -22.52 16 18 Si 0.91 19.80 29.54 -169.99 -5.02 14.78 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C 0.03 0.70 6.61 -7.55 -0.05 0.65 16 23 N -0.54 -10.11 8.30 -9.96 -0.08 -10.19 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.94 8.01 -51.93 -0.42 0.53 16 27 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.70 8.04 -51.93 -0.42 0.29 16 30 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.14 2.14 8.01 -52.49 -0.42 1.72 16 35 H 0.07 1.55 7.83 -51.93 -0.41 1.14 16 36 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.39 10.39 6.33 45.56 0.29 10.68 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.09 1.87 7.26 -51.93 -0.38 1.50 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -27.59 329.06 -9.16 -36.75 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.51 Total: 12.62 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.36 Total: -1.93 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.75 Total: -51.81 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.48 Total: -15.37 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.59 -9.16 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320504126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.427 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds