Wall clock time and date at job start Thu Apr 9 2020 13:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47292 * 2 1 4 4 C 1.53004 * 109.47231 * 239.99914 * 2 1 3 5 5 C 1.50697 * 109.47082 * 120.00129 * 2 1 3 6 6 N 1.31792 * 119.08437 * 240.02075 * 5 2 1 7 7 C 1.32545 * 121.00911 * 179.75129 * 6 5 2 8 8 C 1.38121 * 119.20089 * 0.47953 * 7 6 5 9 9 C 1.39625 * 118.33216 * 359.50980 * 8 7 6 10 10 N 1.38541 * 120.53160 * 180.27105 * 9 8 7 11 11 C 1.47480 * 111.00029 * 301.52057 * 10 9 8 12 12 C 1.53511 * 87.92927 * 221.29269 * 11 10 9 13 13 O 1.42899 * 114.17467 * 272.37707 * 12 11 10 14 14 C 1.50704 * 114.16848 * 139.67099 * 12 11 10 15 15 H 1.08004 * 120.00167 * 266.16183 * 14 12 11 16 16 C 1.37873 * 120.00007 * 86.15863 * 14 12 11 17 17 N 1.31515 * 119.99889 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00036 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47431 * 90.00011 * 18 16 14 20 20 H 1.48506 * 109.47143 * 209.99989 * 18 16 14 21 21 H 1.48505 * 109.47142 * 329.99712 * 18 16 14 22 22 C 1.47476 * 110.99904 * 205.54726 * 10 9 8 23 23 N 1.31749 * 119.08224 * 59.99587 * 5 2 1 24 24 H 1.08991 * 109.47272 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.46547 * 59.99993 * 1 2 3 26 26 H 1.08999 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47187 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46797 * 300.00078 * 3 2 1 29 29 H 1.09003 * 109.46795 * 59.99844 * 3 2 1 30 30 H 1.08999 * 109.47143 * 300.00305 * 4 2 1 31 31 H 1.09000 * 109.46827 * 60.00256 * 4 2 1 32 32 H 1.08997 * 109.47175 * 180.02562 * 4 2 1 33 33 H 1.08001 * 120.39871 * 180.24199 * 7 6 5 34 34 H 1.08000 * 120.83096 * 179.79089 * 8 7 6 35 35 H 1.09000 * 113.47742 * 336.05796 * 11 10 9 36 36 H 1.09003 * 113.47790 * 106.53123 * 11 10 9 37 37 H 0.96707 * 113.99790 * 273.84324 * 13 12 11 38 38 H 0.97004 * 119.99697 * 180.02562 * 17 16 14 39 39 H 1.09002 * 113.47541 * 253.46740 * 22 10 9 40 40 H 1.09000 * 113.47869 * 23.94103 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 2.7885 -0.0525 2.0862 7 6 3.2470 -0.6385 3.1831 8 6 2.9320 -1.9619 3.4221 9 6 2.1285 -2.6295 2.4957 10 7 1.7799 -3.9558 2.6930 11 6 2.9793 -4.8077 2.7965 12 6 2.2474 -5.8468 1.9356 13 8 1.4411 -6.7611 2.6811 14 6 3.1189 -6.5196 0.9066 15 1 3.1657 -6.1299 -0.0996 16 6 3.8567 -7.6327 1.2496 17 7 3.7994 -8.1076 2.4747 18 14 4.9375 -8.4663 -0.0256 19 1 6.2944 -7.8639 0.0055 20 1 5.0327 -9.9168 0.2781 21 1 4.3445 -8.2810 -1.3745 22 6 1.4862 -4.6215 1.4102 23 7 1.7030 -1.9718 1.4209 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6768 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.8627 -0.0889 3.8797 34 1 3.2942 -2.4663 4.3057 35 1 3.8574 -4.3822 2.3108 36 1 3.1825 -5.1501 3.8113 37 1 1.9231 -7.5320 3.0108 38 1 4.3188 -8.8905 2.7162 39 1 0.4240 -4.8061 1.2500 40 1 1.9660 -4.1463 0.5545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320504126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:47 Heat of formation + Delta-G solvation = 16.212216 kcal Electronic energy + Delta-G solvation = -22073.810329 eV Core-core repulsion = 18889.187753 eV Total energy + Delta-G solvation = -3184.622576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.63751 -40.86176 -37.70752 -36.49053 -34.28925 -34.12235 -32.36236 -29.61140 -28.19644 -28.12663 -27.25456 -26.75353 -25.05858 -23.66562 -20.95620 -20.53435 -19.47567 -18.53323 -17.89478 -17.13545 -16.70748 -16.28684 -16.24869 -15.95908 -15.57111 -15.18141 -14.72724 -14.67193 -14.53331 -14.05578 -13.79845 -13.45686 -13.11587 -13.03110 -12.85441 -12.73404 -12.56994 -12.49089 -12.29821 -12.25904 -11.95527 -11.90947 -11.82329 -11.57773 -11.31980 -10.83216 -10.70988 -10.38166 -10.13721 -9.68893 -8.32302 -6.50091 -0.07524 0.10820 1.40772 1.43931 1.53935 2.33386 2.49093 2.76726 2.90866 2.97174 3.22985 3.59386 3.92510 3.95925 4.03735 4.05026 4.11396 4.17981 4.20060 4.32809 4.52652 4.61464 4.72717 4.76421 4.77465 4.87272 4.89479 4.97935 4.99194 5.02798 5.07265 5.21522 5.25116 5.36643 5.42849 5.53744 5.67384 5.86831 6.07360 6.12682 6.54930 7.15863 7.23451 7.47294 8.73754 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.004937 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.116420 B = 5669.878252 C = 6066.314268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.003 4.003 3 C -0.116 4.116 4 C -0.131 4.131 5 C 0.333 3.667 6 N -0.544 5.544 7 C 0.165 3.835 8 C -0.256 4.256 9 C 0.311 3.689 10 N -0.432 5.432 11 C 0.013 3.987 12 C 0.226 3.774 13 O -0.579 6.579 14 C -0.559 4.559 15 H 0.065 0.935 16 C 0.033 3.967 17 N -0.915 5.915 18 Si 0.969 3.031 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.043 3.957 23 N -0.559 5.559 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.208 0.792 34 H 0.155 0.845 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.388 0.612 38 H 0.278 0.722 39 H 0.070 0.930 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 15.143 -2.763 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.005 4.005 3 C -0.174 4.174 4 C -0.189 4.189 5 C 0.064 3.936 6 N -0.260 5.260 7 C 0.001 3.999 8 C -0.281 4.281 9 C 0.072 3.928 10 N -0.149 5.149 11 C -0.114 4.114 12 C 0.184 3.816 13 O -0.392 6.392 14 C -0.596 4.596 15 H 0.083 0.917 16 C -0.167 4.167 17 N -0.556 5.556 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.084 4.084 23 N -0.278 5.278 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.225 0.775 34 H 0.173 0.827 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.243 0.757 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.252 15.853 -2.991 16.181 hybrid contribution 1.634 -1.639 0.364 2.343 sum 0.381 14.214 -2.627 14.459 Atomic orbital electron populations 1.21785 0.92059 1.02017 1.02841 1.19565 0.96678 0.95718 0.88508 1.21625 1.01165 0.92113 1.02461 1.21804 1.00450 1.00300 0.96362 1.23537 0.88864 0.85944 0.95222 1.68339 1.13623 1.39222 1.04786 1.23642 0.92586 0.90727 0.92901 1.22644 1.03861 0.98445 1.03138 1.21263 0.88663 0.93633 0.89277 1.65687 1.24212 0.98080 1.26872 1.24605 0.90737 0.93853 1.02242 1.19695 0.87409 0.86011 0.88487 1.86038 1.41047 1.38412 1.73658 1.21691 1.26503 1.13771 0.97672 0.91724 1.25773 0.96971 0.96537 0.97438 1.69335 1.42372 1.24763 1.19089 0.85390 0.78610 0.77679 0.79004 1.19795 1.20175 1.19484 1.23794 1.01396 0.92912 0.90318 1.68092 1.27186 1.11374 1.21126 0.93314 0.88970 0.93469 0.92729 0.90032 0.92557 0.93479 0.88931 0.93534 0.77519 0.82702 0.91534 0.90584 0.75679 0.91217 0.91107 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.37 71.98 0.60 -2.35 16 2 C 0.00 -0.06 0.92 -52.93 -0.05 -0.11 16 3 C -0.12 -2.32 7.67 71.98 0.55 -1.77 16 4 C -0.13 -3.14 8.37 71.98 0.60 -2.53 16 5 C 0.33 10.67 6.25 138.76 0.87 11.54 16 6 N -0.54 -16.15 9.00 -188.11 -1.69 -17.84 16 7 C 0.16 4.39 11.29 84.56 0.95 5.35 16 8 C -0.26 -8.16 9.46 22.58 0.21 -7.95 16 9 C 0.31 12.11 6.06 133.16 0.81 12.92 16 10 N -0.43 -18.88 6.47 -731.68 -4.73 -23.62 16 11 C 0.01 0.59 6.53 83.58 0.55 1.14 16 12 C 0.23 11.44 1.57 -11.19 -0.02 11.42 16 13 O -0.58 -31.31 13.54 -148.98 -2.02 -33.33 16 14 C -0.56 -29.43 8.68 25.60 0.22 -29.21 16 15 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 16 C 0.03 1.70 5.40 84.65 0.46 2.16 16 17 N -0.91 -47.50 11.02 21.45 0.24 -47.27 16 18 Si 0.97 40.51 29.54 68.60 2.03 42.53 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 C 0.04 2.00 6.61 83.58 0.55 2.55 16 23 N -0.56 -20.91 8.30 -185.44 -1.54 -22.45 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.28 8.01 -2.39 -0.02 1.26 16 27 H 0.05 1.16 8.04 -2.39 -0.02 1.14 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.17 8.04 -2.39 -0.02 1.15 16 30 H 0.05 1.33 8.01 -2.39 -0.02 1.31 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.21 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.16 4.44 8.01 -2.91 -0.02 4.42 16 35 H 0.07 3.02 7.83 -2.39 -0.02 3.00 16 36 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.39 21.16 6.33 -74.05 -0.47 20.70 16 38 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 39 H 0.07 3.29 8.14 -2.39 -0.02 3.28 16 40 H 0.08 3.81 7.26 -2.39 -0.02 3.79 16 Total: -1.00 -59.75 329.06 -0.85 -60.60 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.56 Total: 38.22 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.31 Total: 3.15 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -7.73 Total: -111.18 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -2.02 Total: -33.33 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -59.75 -0.85 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320504126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.816 kcal (2) G-P(sol) polarization free energy of solvation -59.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds