Wall clock time and date at job start Thu Apr 9 2020 13:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39749 * 126.08996 * 2 1 4 4 N 1.30848 * 108.32539 * 180.02562 * 3 2 1 5 5 N 1.40063 * 108.37514 * 0.02562 * 4 3 2 6 6 C 1.46508 * 126.05101 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.46777 * 276.57871 * 6 5 4 8 8 C 1.53008 * 117.49303 * 241.07096 * 7 6 5 9 9 C 1.53004 * 117.49331 * 172.41600 * 7 6 5 10 10 C 1.35266 * 107.90544 * 359.97438 * 5 4 3 11 11 N 1.39471 * 126.21733 * 179.97438 * 10 5 4 12 12 C 1.34777 * 120.00227 * 234.50524 * 11 10 5 13 13 O 1.21295 * 119.99231 * 0.92581 * 12 11 10 14 14 C 1.50694 * 120.00419 * 180.92370 * 12 11 10 15 15 H 1.09006 * 109.46960 * 60.00343 * 14 12 11 16 16 C 1.53001 * 109.47249 * 300.00216 * 14 12 11 17 17 C 1.50700 * 109.47202 * 179.97438 * 14 12 11 18 18 H 1.08001 * 120.00053 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00033 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00138 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00237 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47062 * 60.00191 * 21 19 17 23 23 H 1.48498 * 109.47577 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46783 * 300.00330 * 21 19 17 25 25 H 1.09001 * 109.47148 * 92.73250 * 1 2 3 26 26 H 1.08997 * 109.47376 * 212.73640 * 1 2 3 27 27 H 1.09003 * 109.47006 * 332.73695 * 1 2 3 28 28 H 1.08000 * 125.84160 * 359.77068 * 3 2 1 29 29 H 1.09002 * 109.46405 * 36.57271 * 6 5 4 30 30 H 1.08991 * 109.47106 * 156.57312 * 6 5 4 31 31 H 1.08991 * 115.55592 * 26.74053 * 7 6 5 32 32 H 1.08990 * 117.50062 * 0.02562 * 8 7 6 33 33 H 1.09002 * 117.49667 * 145.02455 * 8 7 6 34 34 H 1.08997 * 117.49676 * 214.97461 * 9 7 6 35 35 H 1.08996 * 117.50007 * 359.97067 * 9 7 6 36 36 H 0.96998 * 120.00009 * 54.50231 * 11 10 5 37 37 H 1.09003 * 109.46684 * 179.97438 * 16 14 12 38 38 H 1.08996 * 109.47161 * 299.99961 * 16 14 12 39 39 H 1.09003 * 109.47112 * 59.99886 * 16 14 12 40 40 H 0.97003 * 120.00742 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3302 1.1293 0.0000 4 7 3.5763 0.7301 -0.0006 5 7 3.5912 -0.6705 -0.0015 6 6 4.7848 -1.5200 -0.0029 7 6 5.2951 -1.6801 -1.4363 8 6 5.3363 -3.0948 -2.0176 9 6 6.6379 -2.3867 -1.6334 10 6 2.3086 -1.1000 -0.0010 11 7 1.8845 -2.4287 -0.0021 12 6 1.0332 -2.8636 -0.9522 13 8 0.6491 -2.1037 -1.8160 14 6 0.5587 -4.2939 -0.9412 15 1 0.0356 -4.4960 -0.0065 16 6 1.7615 -5.2313 -1.0656 17 6 -0.3780 -4.5212 -2.0997 18 1 -0.6064 -3.7111 -2.7765 19 6 -0.9424 -5.7637 -2.2963 20 7 -0.6639 -6.7503 -1.4725 21 14 -2.1029 -6.0458 -3.7327 22 1 -1.3905 -5.7699 -5.0061 23 1 -2.5706 -7.4551 -3.7219 24 1 -3.2705 -5.1362 -3.6116 25 1 -0.3633 -0.0490 -1.0265 26 1 -0.3634 -0.8644 0.5557 27 1 -0.3633 0.9135 0.4708 28 1 1.9952 2.1560 -0.0035 29 1 5.5598 -1.0586 0.6092 30 1 4.5344 -2.4991 0.4051 31 1 5.0516 -0.8636 -2.1160 32 1 4.9994 -3.9113 -1.3791 33 1 5.1202 -3.2089 -3.0799 34 1 7.2775 -2.0352 -2.4429 35 1 7.1578 -2.7370 -0.7418 36 1 2.2023 -3.0398 0.6809 37 1 1.4182 -6.2658 -1.0572 38 1 2.2845 -5.0292 -2.0002 39 1 2.4386 -5.0667 -0.2274 40 1 -1.0613 -7.6243 -1.6105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333887786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:03 Heat of formation + Delta-G solvation = 60.838297 kcal Electronic energy + Delta-G solvation = -22083.932438 eV Core-core repulsion = 18901.244994 eV Total energy + Delta-G solvation = -3182.687444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.24016 -38.72511 -37.57270 -34.19563 -33.86605 -33.02104 -30.91850 -29.92550 -27.56527 -25.24819 -25.14309 -23.12763 -22.46792 -21.60501 -20.37492 -20.21020 -19.05267 -17.69002 -16.27519 -16.05194 -15.45085 -15.17623 -14.72580 -14.50854 -14.32122 -13.78080 -13.60226 -13.11861 -12.98501 -12.69654 -12.50031 -12.22677 -11.73411 -11.67235 -11.61623 -11.55136 -11.07400 -10.84370 -10.76839 -10.60071 -10.48364 -10.34927 -10.12921 -10.04124 -9.68755 -9.08770 -8.82483 -8.68770 -8.42508 -7.78493 -6.10622 -4.14306 1.99170 2.48018 3.02994 3.32640 3.35394 3.40457 3.58116 3.61106 3.78075 4.41599 4.46732 4.65309 4.85204 4.91778 5.09794 5.23187 5.35068 5.38307 5.53107 5.54891 5.70297 5.86059 5.91775 6.01706 6.08580 6.11736 6.24474 6.32408 6.48191 6.55712 6.63543 6.69109 6.79351 6.96995 7.32734 7.43274 7.62007 7.77425 7.94865 8.02718 8.26745 8.94064 9.02865 9.51736 10.96943 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005719 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.253008 B = 4895.069816 C = 5939.463702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.228 4.228 3 C 0.055 3.945 4 N -0.296 5.296 5 N -0.379 5.379 6 C 0.169 3.831 7 C -0.172 4.172 8 C -0.170 4.170 9 C -0.171 4.171 10 C 0.316 3.684 11 N -0.674 5.674 12 C 0.526 3.474 13 O -0.512 6.512 14 C 0.036 3.964 15 H 0.056 0.944 16 C -0.133 4.133 17 C -0.503 4.503 18 H 0.075 0.925 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.181 0.819 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.405 0.595 37 H 0.096 0.904 38 H 0.033 0.967 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 7.647 5.350 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.241 4.241 3 C -0.130 4.130 4 N -0.118 5.118 5 N -0.166 5.166 6 C 0.047 3.953 7 C -0.191 4.191 8 C -0.207 4.207 9 C -0.209 4.209 10 C 0.098 3.902 11 N -0.328 5.328 12 C 0.316 3.684 13 O -0.383 6.383 14 C 0.015 3.985 15 H 0.074 0.926 16 C -0.191 4.191 17 C -0.542 4.542 18 H 0.093 0.907 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.198 0.802 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.241 0.759 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.437 8.231 4.708 14.857 hybrid contribution -1.118 -0.812 -0.456 1.455 sum 10.320 7.419 4.252 13.402 Atomic orbital electron populations 1.20003 0.89034 1.00776 1.02381 1.19726 0.97030 0.90666 1.16724 1.23515 0.89920 0.99424 1.00184 1.77294 1.20867 0.87449 1.26187 1.48698 1.04202 1.04724 1.58983 1.21123 0.85094 0.93219 0.95895 1.22628 1.01523 0.97565 0.97398 1.23110 1.00464 0.94734 1.02427 1.22968 0.90460 1.04011 1.03447 1.17742 0.84284 0.86788 1.01429 1.43561 1.49386 1.07033 1.32825 1.22318 0.75486 0.92216 0.78356 1.90582 1.54596 1.57461 1.35617 1.18883 0.95288 0.83825 1.00485 0.92615 1.21774 0.95570 1.04603 0.97171 1.21060 1.25389 0.96765 1.10941 0.90725 1.24926 0.96640 0.95826 0.96646 1.69844 1.44234 1.02190 1.37222 0.86493 0.81136 0.76882 0.82588 1.20197 1.21330 1.20084 0.91123 0.92729 0.92747 0.80218 0.88811 0.89205 0.87264 0.88227 0.88491 0.88588 0.88573 0.75889 0.88558 0.94804 0.97113 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 8.93 36.01 0.32 -0.74 16 2 C -0.23 -3.92 5.72 -104.82 -0.60 -4.52 16 3 C 0.06 0.84 11.95 -17.41 -0.21 0.63 16 4 N -0.30 -4.79 12.56 30.60 0.38 -4.41 16 5 N -0.38 -5.96 3.62 -60.39 -0.22 -6.18 16 6 C 0.17 2.09 6.69 -4.04 -0.03 2.06 16 7 C -0.17 -2.18 6.01 -90.62 -0.54 -2.72 16 8 C -0.17 -2.10 10.18 -26.69 -0.27 -2.37 16 9 C -0.17 -1.71 10.25 -26.69 -0.27 -1.98 16 10 C 0.32 5.49 6.86 -153.16 -1.05 4.44 16 11 N -0.67 -11.72 5.04 -11.46 -0.06 -11.78 16 12 C 0.53 11.40 6.62 -10.99 -0.07 11.33 16 13 O -0.51 -12.75 13.29 5.54 0.07 -12.68 16 14 C 0.04 0.86 2.64 -92.93 -0.25 0.61 16 15 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 16 C -0.13 -2.85 8.87 37.16 0.33 -2.52 16 17 C -0.50 -13.67 8.38 -34.44 -0.29 -13.96 16 18 H 0.07 2.15 6.75 -52.49 -0.35 1.80 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 20 N -0.90 -24.21 11.32 55.43 0.63 -23.58 16 21 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H 0.07 1.32 7.36 -51.93 -0.38 0.93 16 26 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 31 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.10 1.21 8.03 -51.93 -0.42 0.79 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.40 5.89 8.21 -40.82 -0.34 5.55 16 37 H 0.10 2.30 6.07 -51.93 -0.32 1.98 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.17 7.54 -51.93 -0.39 -0.22 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -30.81 336.31 -8.12 -38.94 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.95 Total: 6.55 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -3.03 Total: -8.19 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.74 Total: -45.95 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.81 -8.12 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333887786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.774 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds