Wall clock time and date at job start Thu Apr 9 2020 13:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39749 * 126.08996 * 2 1 4 4 N 1.30848 * 108.32539 * 180.02562 * 3 2 1 5 5 N 1.40063 * 108.37514 * 0.02562 * 4 3 2 6 6 C 1.46508 * 126.05101 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.46777 * 276.57871 * 6 5 4 8 8 C 1.53008 * 117.49303 * 241.07096 * 7 6 5 9 9 C 1.53004 * 117.49331 * 172.41600 * 7 6 5 10 10 C 1.35266 * 107.90544 * 359.97438 * 5 4 3 11 11 N 1.39471 * 126.21733 * 179.97438 * 10 5 4 12 12 C 1.34777 * 120.00227 * 234.50524 * 11 10 5 13 13 O 1.21295 * 119.99231 * 0.92581 * 12 11 10 14 14 C 1.50694 * 120.00419 * 180.92370 * 12 11 10 15 15 H 1.09006 * 109.46960 * 60.00343 * 14 12 11 16 16 C 1.53001 * 109.47249 * 300.00216 * 14 12 11 17 17 C 1.50700 * 109.47202 * 179.97438 * 14 12 11 18 18 H 1.08001 * 120.00053 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00033 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00138 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00237 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47062 * 60.00191 * 21 19 17 23 23 H 1.48498 * 109.47577 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46783 * 300.00330 * 21 19 17 25 25 H 1.09001 * 109.47148 * 92.73250 * 1 2 3 26 26 H 1.08997 * 109.47376 * 212.73640 * 1 2 3 27 27 H 1.09003 * 109.47006 * 332.73695 * 1 2 3 28 28 H 1.08000 * 125.84160 * 359.77068 * 3 2 1 29 29 H 1.09002 * 109.46405 * 36.57271 * 6 5 4 30 30 H 1.08991 * 109.47106 * 156.57312 * 6 5 4 31 31 H 1.08991 * 115.55592 * 26.74053 * 7 6 5 32 32 H 1.08990 * 117.50062 * 0.02562 * 8 7 6 33 33 H 1.09002 * 117.49667 * 145.02455 * 8 7 6 34 34 H 1.08997 * 117.49676 * 214.97461 * 9 7 6 35 35 H 1.08996 * 117.50007 * 359.97067 * 9 7 6 36 36 H 0.96998 * 120.00009 * 54.50231 * 11 10 5 37 37 H 1.09003 * 109.46684 * 179.97438 * 16 14 12 38 38 H 1.08996 * 109.47161 * 299.99961 * 16 14 12 39 39 H 1.09003 * 109.47112 * 59.99886 * 16 14 12 40 40 H 0.97003 * 120.00742 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3302 1.1293 0.0000 4 7 3.5763 0.7301 -0.0006 5 7 3.5912 -0.6705 -0.0015 6 6 4.7848 -1.5200 -0.0029 7 6 5.2951 -1.6801 -1.4363 8 6 5.3363 -3.0948 -2.0176 9 6 6.6379 -2.3867 -1.6334 10 6 2.3086 -1.1000 -0.0010 11 7 1.8845 -2.4287 -0.0021 12 6 1.0332 -2.8636 -0.9522 13 8 0.6491 -2.1037 -1.8160 14 6 0.5587 -4.2939 -0.9412 15 1 0.0356 -4.4960 -0.0065 16 6 1.7615 -5.2313 -1.0656 17 6 -0.3780 -4.5212 -2.0997 18 1 -0.6064 -3.7111 -2.7765 19 6 -0.9424 -5.7637 -2.2963 20 7 -0.6639 -6.7503 -1.4725 21 14 -2.1029 -6.0458 -3.7327 22 1 -1.3905 -5.7699 -5.0061 23 1 -2.5706 -7.4551 -3.7219 24 1 -3.2705 -5.1362 -3.6116 25 1 -0.3633 -0.0490 -1.0265 26 1 -0.3634 -0.8644 0.5557 27 1 -0.3633 0.9135 0.4708 28 1 1.9952 2.1560 -0.0035 29 1 5.5598 -1.0586 0.6092 30 1 4.5344 -2.4991 0.4051 31 1 5.0516 -0.8636 -2.1160 32 1 4.9994 -3.9113 -1.3791 33 1 5.1202 -3.2089 -3.0799 34 1 7.2775 -2.0352 -2.4429 35 1 7.1578 -2.7370 -0.7418 36 1 2.2023 -3.0398 0.6809 37 1 1.4182 -6.2658 -1.0572 38 1 2.2845 -5.0292 -2.0002 39 1 2.4386 -5.0667 -0.2274 40 1 -1.0613 -7.6243 -1.6105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333887786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:02 Heat of formation + Delta-G solvation = 43.272806 kcal Electronic energy + Delta-G solvation = -22084.694134 eV Core-core repulsion = 18901.244994 eV Total energy + Delta-G solvation = -3183.449141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.52895 -40.38784 -38.51968 -35.83750 -35.73220 -34.19992 -32.70502 -31.36342 -28.76897 -27.21184 -26.38634 -24.85872 -23.35534 -22.70044 -21.99525 -21.30871 -20.52825 -19.01756 -18.23749 -17.64961 -16.78386 -16.58095 -16.19986 -15.96232 -15.63076 -15.21143 -14.89467 -14.62387 -14.39887 -14.14944 -13.77716 -13.64542 -13.37916 -13.03184 -12.92228 -12.73572 -12.67381 -12.59804 -12.44230 -12.23759 -12.02284 -11.82832 -11.46946 -11.17308 -11.06519 -10.98782 -10.67170 -10.41207 -9.96842 -9.12446 -8.15877 -6.25615 0.67993 1.25178 1.42642 1.42821 1.51643 1.71841 1.98158 2.25735 2.47102 2.78818 3.14781 3.47337 3.69057 3.89661 3.96838 4.12304 4.14415 4.29732 4.37730 4.47927 4.58882 4.72280 4.72881 4.81325 4.90120 4.91046 4.93121 4.96138 5.01931 5.13208 5.17437 5.26437 5.29279 5.47363 5.73127 5.74734 5.90031 6.09148 6.16709 6.48281 6.73695 6.82551 7.33665 7.45318 8.89670 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005719 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.253008 B = 4895.069816 C = 5939.463702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.247 4.247 3 C 0.059 3.941 4 N -0.305 5.305 5 N -0.376 5.376 6 C 0.162 3.838 7 C -0.187 4.187 8 C -0.188 4.188 9 C -0.138 4.138 10 C 0.294 3.706 11 N -0.654 5.654 12 C 0.535 3.465 13 O -0.550 6.550 14 C 0.034 3.966 15 H 0.048 0.952 16 C -0.120 4.120 17 C -0.528 4.528 18 H 0.049 0.951 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.951 3.049 22 H -0.279 1.279 23 H -0.275 1.275 24 H -0.277 1.277 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.216 0.784 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.420 0.580 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.937 7.953 6.376 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.261 4.261 3 C -0.126 4.126 4 N -0.127 5.127 5 N -0.163 5.163 6 C 0.041 3.959 7 C -0.206 4.206 8 C -0.225 4.225 9 C -0.176 4.176 10 C 0.076 3.924 11 N -0.308 5.308 12 C 0.325 3.675 13 O -0.424 6.424 14 C 0.013 3.987 15 H 0.066 0.934 16 C -0.178 4.178 17 C -0.566 4.566 18 H 0.067 0.933 19 C -0.175 4.175 20 N -0.547 5.547 21 Si 0.777 3.223 22 H -0.204 1.204 23 H -0.200 1.200 24 H -0.202 1.202 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.232 0.768 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.259 0.741 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.933 8.524 5.775 16.531 hybrid contribution -1.532 -0.861 -0.759 1.914 sum 11.400 7.664 5.017 14.624 Atomic orbital electron populations 1.19924 0.89055 1.01838 1.00714 1.20044 0.97437 0.91570 1.17008 1.24035 0.89108 1.00544 0.98948 1.77268 1.21418 0.87754 1.26252 1.48918 1.04355 1.04805 1.58200 1.21459 0.84564 0.93749 0.96088 1.22525 1.04266 0.96707 0.97085 1.23126 1.03050 0.94712 1.01609 1.23088 0.89193 1.00880 1.04392 1.17850 0.85428 0.86416 1.02738 1.43016 1.48182 1.07666 1.31932 1.21833 0.75842 0.91263 0.78568 1.90569 1.56315 1.58084 1.37454 1.18788 0.95621 0.85641 0.98679 0.93427 1.21578 0.95258 1.02426 0.98524 1.21198 1.27009 0.96417 1.12020 0.93277 1.25498 0.97749 0.95602 0.98630 1.69915 1.44532 1.02313 1.37931 0.85724 0.79396 0.77224 0.79977 1.20430 1.19980 1.20201 0.93851 0.94164 0.89421 0.76800 0.86586 0.87680 0.90035 0.87949 0.90105 0.87658 0.85965 0.74126 0.90810 0.95692 0.92822 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.89 8.93 71.24 0.64 -1.25 16 2 C -0.25 -8.29 5.72 -19.99 -0.11 -8.40 16 3 C 0.06 1.69 11.95 85.20 1.02 2.70 16 4 N -0.30 -9.34 12.56 -57.10 -0.72 -10.05 16 5 N -0.38 -11.25 3.62 -344.98 -1.25 -12.50 16 6 C 0.16 3.64 6.69 86.38 0.58 4.22 16 7 C -0.19 -4.47 6.01 -10.79 -0.06 -4.53 16 8 C -0.19 -4.42 10.18 30.62 0.31 -4.11 16 9 C -0.14 -2.38 10.25 30.62 0.31 -2.07 16 10 C 0.29 9.98 6.86 131.32 0.90 10.88 16 11 N -0.65 -22.31 5.04 -308.56 -1.56 -23.86 16 12 C 0.54 23.46 6.62 87.65 0.58 24.04 16 13 O -0.55 -28.25 13.29 -3.08 -0.04 -28.29 16 14 C 0.03 1.62 2.64 -12.29 -0.03 1.59 16 15 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 16 C -0.12 -5.06 8.87 71.98 0.64 -4.42 16 17 C -0.53 -29.38 8.38 25.60 0.21 -29.17 16 18 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 19 C 0.02 1.35 5.30 84.65 0.45 1.80 16 20 N -0.91 -49.06 11.32 21.45 0.24 -48.82 16 21 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H 0.04 1.65 7.36 -2.39 -0.02 1.64 16 26 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.22 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.11 2.01 7.69 -2.39 -0.02 2.00 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.10 2.32 8.03 -2.39 -0.02 2.30 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.42 11.52 8.21 -92.71 -0.76 10.76 16 37 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 1.75 7.54 -2.39 -0.02 1.73 16 40 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -67.66 336.31 4.42 -63.24 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.28 Total: 23.07 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 5.43 Total: -8.71 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.28 Total: -95.24 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.04 Total: -28.29 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.66 4.42 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333887786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.512 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds