Wall clock time and date at job start Thu Apr 9 2020 13:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47523 * 2 1 4 4 C 1.53000 * 109.47051 * 119.99906 * 2 1 3 5 5 C 1.52994 * 109.47221 * 174.50112 * 4 2 1 6 6 H 1.08997 * 109.47039 * 56.33599 * 5 4 2 7 7 N 1.46903 * 109.47410 * 296.33337 * 5 4 2 8 8 C 1.50705 * 109.47209 * 176.33722 * 5 4 2 9 9 O 1.21274 * 120.00119 * 100.00191 * 8 5 4 10 10 N 1.34771 * 119.99794 * 279.99946 * 8 5 4 11 11 C 1.39274 * 119.99974 * 185.52751 * 10 8 5 12 12 C 1.39667 * 119.57337 * 19.38439 * 11 10 8 13 13 C 1.38661 * 119.49659 * 180.02562 * 12 11 10 14 14 C 1.38342 * 118.66667 * 0.02562 * 13 12 11 15 15 C 1.40582 * 119.13125 * 359.97438 * 14 13 12 16 16 C 1.41338 * 119.78548 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00494 * 5.84515 * 16 15 14 18 18 C 1.40034 * 119.99498 * 185.85636 * 16 15 14 19 19 N 1.30741 * 120.00436 * 5.85524 * 18 16 15 20 20 Si 1.86801 * 119.99669 * 185.86620 * 18 16 15 21 21 H 1.48504 * 109.47058 * 264.99934 * 20 18 16 22 22 H 1.48496 * 109.47309 * 24.99672 * 20 18 16 23 23 H 1.48494 * 109.47302 * 144.99998 * 20 18 16 24 24 N 1.31905 * 119.57553 * 199.68904 * 11 10 8 25 25 H 1.09003 * 109.47402 * 64.90729 * 1 2 3 26 26 H 1.09001 * 109.47845 * 184.90991 * 1 2 3 27 27 H 1.09004 * 109.47452 * 304.91101 * 1 2 3 28 28 H 1.09001 * 109.46789 * 239.99447 * 2 1 3 29 29 H 1.08995 * 109.46656 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46573 * 300.00172 * 3 2 1 31 31 H 1.08997 * 109.46848 * 59.99718 * 3 2 1 32 32 H 1.09001 * 109.47232 * 54.50245 * 4 2 1 33 33 H 1.08997 * 109.47241 * 294.50490 * 4 2 1 34 34 H 1.00898 * 111.00173 * 176.04070 * 7 5 4 35 35 H 1.00898 * 110.99999 * 300.00459 * 7 5 4 36 36 H 0.97003 * 120.00166 * 5.52810 * 10 8 5 37 37 H 1.08003 * 120.25447 * 0.04831 * 12 11 10 38 38 H 1.07994 * 120.66691 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.43471 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00008 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5636 -0.8421 1.1821 6 1 4.0019 0.1491 1.0660 7 7 3.9383 -1.6806 0.0356 8 6 4.0741 -1.4714 2.4527 9 8 4.3572 -2.6504 2.4742 10 7 4.2161 -0.7239 3.5651 11 6 4.7950 -1.2754 4.7055 12 6 5.5807 -2.4246 4.5927 13 6 6.1559 -2.9726 5.7292 14 6 5.9310 -2.3591 6.9486 15 6 5.1306 -1.2044 6.9964 16 6 4.8922 -0.5661 8.2347 17 1 5.3990 -0.9081 9.1249 18 6 3.9987 0.5097 8.3073 19 7 3.2994 0.8507 7.2566 20 14 3.8063 1.4577 9.9053 21 1 2.6565 0.9109 10.6699 22 1 5.0456 1.3243 10.7124 23 1 3.5635 2.8914 9.6042 24 7 4.5893 -0.7091 5.8789 25 1 -0.3634 0.4358 -0.9307 26 1 -0.3635 -1.0239 0.0880 27 1 -0.3634 0.5881 0.8427 28 1 1.8932 -0.5139 -0.8900 29 1 3.1300 1.4423 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5984 -1.7165 1.2999 33 1 1.7592 -0.1537 2.1365 34 1 4.9410 -1.7232 -0.0689 35 1 3.5438 -2.6054 0.1197 36 1 3.9151 0.1982 3.5715 37 1 5.7394 -2.8827 3.6277 38 1 6.7664 -3.8610 5.6639 39 1 6.3654 -2.7614 7.8518 40 1 2.6807 1.5961 7.3069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337077607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:08 Heat of formation + Delta-G solvation = -33.051125 kcal Electronic energy + Delta-G solvation = -21421.947567 eV Core-core repulsion = 18235.188772 eV Total energy + Delta-G solvation = -3186.758795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65376 -39.77869 -37.86142 -36.10825 -35.13270 -34.39938 -32.38498 -31.23825 -29.10853 -27.94032 -27.49599 -25.52486 -23.56160 -23.02130 -21.30797 -20.65792 -19.42045 -18.79937 -18.01642 -17.30332 -16.69712 -16.50842 -16.10339 -15.89788 -15.46573 -15.29498 -15.06894 -14.73289 -14.48936 -14.19361 -13.81887 -13.43275 -12.97856 -12.95683 -12.90091 -12.86128 -12.69926 -12.59056 -12.47702 -11.89250 -11.73663 -11.58097 -11.48690 -11.42309 -11.09074 -10.91398 -10.05140 -9.80538 -9.66939 -9.03186 -8.37529 -6.53666 0.66764 1.04939 1.41882 1.49041 1.56137 1.67825 2.06759 2.22918 2.83976 3.38417 3.65489 3.86789 3.91375 4.02386 4.15245 4.28438 4.31491 4.53057 4.60227 4.79561 4.84313 4.86824 4.89144 4.91560 4.95205 5.02843 5.13167 5.16607 5.21290 5.37012 5.53260 5.57222 5.62724 5.65340 5.87572 5.91651 6.05086 6.22804 6.37174 6.46884 6.74488 6.89092 7.14005 8.05456 8.41728 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.004779 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.321039 B = 5857.610087 C = 7181.350421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.100 4.100 5 C 0.094 3.906 6 H 0.125 0.875 7 N -0.804 5.804 8 C 0.477 3.523 9 O -0.558 6.558 10 N -0.640 5.640 11 C 0.343 3.657 12 C -0.327 4.327 13 C -0.049 4.049 14 C -0.309 4.309 15 C 0.245 3.755 16 C -0.467 4.467 17 H 0.092 0.908 18 C 0.029 3.971 19 N -0.754 5.754 20 Si 0.988 3.012 21 H -0.264 1.264 22 H -0.256 1.256 23 H -0.266 1.266 24 N -0.533 5.533 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.349 0.651 35 H 0.348 0.652 36 H 0.415 0.585 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 3.263 -12.042 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.207 4.207 4 C -0.139 4.139 5 C -0.023 4.023 6 H 0.142 0.858 7 N -0.332 5.332 8 C 0.264 3.736 9 O -0.436 6.436 10 N -0.285 5.285 11 C 0.107 3.893 12 C -0.352 4.352 13 C -0.074 4.074 14 C -0.332 4.332 15 C 0.119 3.881 16 C -0.498 4.498 17 H 0.110 0.890 18 C -0.193 4.193 19 N -0.376 5.376 20 Si 0.808 3.192 21 H -0.189 1.189 22 H -0.180 1.180 23 H -0.191 1.191 24 N -0.252 5.252 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.252 0.748 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.671 3.852 -12.577 13.958 hybrid contribution 0.847 -0.828 1.620 2.007 sum -3.824 3.024 -10.956 11.992 Atomic orbital electron populations 1.21862 0.95056 1.01600 1.02083 1.20948 0.95340 0.96268 0.97267 1.21904 1.01287 0.95499 1.01981 1.21625 0.90954 1.01340 0.99947 1.21693 0.98135 0.98898 0.83526 0.85766 1.59219 1.17380 1.18959 1.37643 1.23170 0.76937 0.87006 0.86474 1.90581 1.50712 1.17251 1.85033 1.43459 1.58583 1.16425 1.10054 1.18981 0.91035 0.91635 0.87611 1.21767 1.10099 1.03066 1.00277 1.21175 0.96165 0.97840 0.92170 1.21901 1.11423 1.01874 0.97956 1.18697 0.88423 0.89445 0.91517 1.19959 1.22439 1.13472 0.93964 0.89031 1.26946 0.93526 0.97404 1.01462 1.70143 1.15061 1.21508 1.30911 0.85110 0.79705 0.77410 0.76959 1.18883 1.17991 1.19062 1.68066 1.26556 1.34433 0.96179 0.91582 0.93074 0.93087 0.89613 0.92337 0.91844 0.93011 0.92347 0.91511 0.83836 0.83844 0.74833 0.85033 0.85224 0.86882 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.19 71.98 0.66 -1.83 16 2 C -0.08 -1.43 2.86 -10.80 -0.03 -1.46 16 3 C -0.15 -2.45 8.96 71.98 0.65 -1.81 16 4 C -0.10 -2.24 4.31 30.59 0.13 -2.11 16 5 C 0.09 2.22 3.01 44.17 0.13 2.36 16 6 H 0.12 2.54 6.42 -2.39 -0.02 2.52 16 7 N -0.80 -16.92 8.29 -171.80 -1.42 -18.35 16 8 C 0.48 16.56 6.91 87.66 0.61 17.17 16 9 O -0.56 -22.92 13.07 -3.01 -0.04 -22.96 16 10 N -0.64 -25.51 5.41 -308.37 -1.67 -27.18 16 11 C 0.34 17.30 7.50 133.25 1.00 18.30 16 12 C -0.33 -16.21 8.82 22.72 0.20 -16.01 16 13 C -0.05 -2.35 10.15 22.40 0.23 -2.12 16 14 C -0.31 -15.85 9.83 22.87 0.22 -15.63 16 15 C 0.25 13.86 6.53 40.20 0.26 14.13 16 16 C -0.47 -25.30 9.13 23.47 0.21 -25.08 16 17 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 18 C 0.03 1.44 5.48 85.29 0.47 1.91 16 19 N -0.75 -39.36 11.52 21.84 0.25 -39.11 16 20 Si 0.99 37.27 29.56 68.60 2.03 39.29 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 24 N -0.53 -29.72 7.96 -186.36 -1.48 -31.20 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 1.57 7.56 -2.39 -0.02 1.55 16 29 H 0.06 0.94 6.50 -2.39 -0.02 0.93 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.35 7.03 9.06 -89.70 -0.81 6.21 16 35 H 0.35 7.84 8.58 -89.70 -0.77 7.07 16 36 H 0.41 14.86 8.83 -92.71 -0.82 14.04 16 37 H 0.13 6.35 5.37 -2.95 -0.02 6.33 16 38 H 0.13 5.21 8.06 -2.91 -0.02 5.18 16 39 H 0.11 5.30 8.06 -2.91 -0.02 5.28 16 40 H 0.28 13.10 8.29 -92.71 -0.77 12.33 16 Total: -1.00 -65.79 331.41 1.09 -64.70 By element: Atomic # 1 Polarization: 48.32 SS G_CDS: -1.32 Total: 47.00 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.74 Total: -12.19 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -4.32 Total: -115.83 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.96 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.29 kcal Total: -65.79 1.09 -64.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337077607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.647 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds