Wall clock time and date at job start Thu Apr 9 2020 13:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46693 * 2 1 4 4 C 1.53001 * 109.46862 * 119.99564 * 2 1 3 5 5 N 1.46898 * 109.47243 * 65.00283 * 4 2 1 6 6 C 1.46901 * 111.00062 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47200 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99893 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00045 * 179.97438 * 7 6 5 10 10 C 1.39270 * 120.00181 * 185.60667 * 9 7 6 11 11 C 1.39676 * 119.57493 * 18.86973 * 10 9 7 12 12 C 1.38647 * 119.49846 * 180.02562 * 11 10 9 13 13 C 1.38352 * 118.66715 * 359.74169 * 12 11 10 14 14 C 1.40576 * 119.12889 * 0.50565 * 13 12 11 15 15 C 1.41336 * 119.78389 * 179.76817 * 14 13 12 16 16 H 1.07999 * 120.00309 * 7.00374 * 15 14 13 17 17 C 1.40029 * 119.99969 * 187.00093 * 15 14 13 18 18 N 1.30742 * 120.00396 * 181.89274 * 17 15 14 19 19 Si 1.86805 * 119.99629 * 1.89704 * 17 15 14 20 20 H 1.48504 * 109.46955 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47068 * 299.99751 * 19 17 15 22 22 H 1.48498 * 109.47442 * 59.99743 * 19 17 15 23 23 N 1.31901 * 119.57925 * 198.89825 * 10 9 7 24 24 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47351 * 299.99901 * 1 2 3 26 26 H 1.08996 * 109.46899 * 60.00700 * 1 2 3 27 27 H 1.08994 * 109.47263 * 239.99499 * 2 1 3 28 28 H 1.09004 * 109.46613 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46876 * 299.99314 * 3 2 1 30 30 H 1.08996 * 109.47423 * 60.00228 * 3 2 1 31 31 H 1.09000 * 109.47243 * 305.00155 * 4 2 1 32 32 H 1.09008 * 109.46952 * 185.00595 * 4 2 1 33 33 H 1.00901 * 110.99640 * 56.04738 * 5 4 2 34 34 H 1.08999 * 109.46655 * 60.00141 * 6 5 4 35 35 H 1.08995 * 109.47385 * 300.00235 * 6 5 4 36 36 H 0.96998 * 120.00529 * 5.61400 * 9 7 6 37 37 H 1.08005 * 120.24629 * 0.02562 * 11 10 9 38 38 H 1.08003 * 120.66881 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.43386 * 180.24780 * 13 12 11 40 40 H 0.97002 * 119.99843 * 354.83631 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 -2.1366 1.1906 6 6 2.1257 -2.8624 2.3764 7 6 1.7087 -4.3074 2.2811 8 8 1.0789 -4.6946 1.3198 9 7 2.0366 -5.1696 3.2636 10 6 1.7545 -6.5261 3.1226 11 6 1.5090 -7.0507 1.8516 12 6 1.2278 -8.4013 1.7130 13 6 1.2044 -9.1940 2.8467 14 6 1.4547 -8.6055 4.0985 15 6 1.4294 -9.4015 5.2662 16 1 1.3311 -10.4740 5.1866 17 6 1.5318 -8.7994 6.5263 18 7 1.5456 -9.5384 7.6047 19 14 1.6486 -6.9403 6.6664 20 1 1.7466 -6.5569 8.0977 21 1 2.8544 -6.4641 5.9421 22 1 0.4370 -6.3219 6.0707 23 7 1.7220 -7.2989 4.1910 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1264 -0.6442 1.2953 33 1 1.9883 -2.5692 0.3435 34 1 1.6920 -2.4178 3.2721 35 1 3.2126 -2.8003 2.4298 36 1 2.4690 -4.8455 4.0691 37 1 1.5381 -6.4090 0.9833 38 1 1.0355 -8.8269 0.7392 39 1 0.9924 -10.2504 2.7713 40 1 1.4098 -10.4965 7.5379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337078336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:10 Heat of formation + Delta-G solvation = -18.588002 kcal Electronic energy + Delta-G solvation = -20924.397339 eV Core-core repulsion = 17738.265713 eV Total energy + Delta-G solvation = -3186.131627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17228 -38.32188 -37.28558 -34.60636 -33.92684 -33.48665 -31.12890 -29.84603 -27.71012 -27.27917 -25.35497 -24.19486 -22.03170 -21.70222 -20.58445 -19.77024 -18.36779 -17.42507 -16.62278 -16.27872 -15.39336 -15.09515 -14.92900 -14.72081 -14.48432 -13.91958 -13.73232 -13.52612 -13.10044 -12.82509 -12.68684 -12.44224 -12.30723 -12.22451 -12.05632 -11.82626 -11.19932 -11.16448 -11.05725 -10.87709 -10.79288 -10.38629 -10.00905 -9.66014 -9.28410 -9.14033 -8.62407 -8.55069 -7.82580 -7.40676 -7.26119 -4.79367 2.19791 2.62764 3.01816 3.14592 3.52725 3.63707 3.95194 4.07216 4.36781 4.55948 4.62739 4.69901 4.78840 4.93143 5.10521 5.21377 5.27041 5.39903 5.40334 5.50857 5.52431 5.68771 5.75556 5.83432 5.88437 6.07258 6.08001 6.26382 6.43220 6.50406 6.53685 6.67817 7.12430 7.13472 7.19286 7.42641 7.55798 7.60026 7.75467 8.10151 8.27185 8.44885 8.63841 9.38612 9.98783 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.003770 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.073055 B = 7426.169585 C = 8185.755157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.063 3.937 5 N -0.671 5.671 6 C 0.043 3.957 7 C 0.513 3.487 8 O -0.500 6.500 9 N -0.658 5.658 10 C 0.389 3.611 11 C -0.311 4.311 12 C -0.035 4.035 13 C -0.277 4.277 14 C 0.273 3.727 15 C -0.476 4.476 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.806 5.806 19 Si 1.158 2.842 20 H -0.333 1.333 21 H -0.285 1.285 22 H -0.294 1.294 23 N -0.599 5.599 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.351 0.649 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.407 0.593 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 17.436 -9.953 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.066 4.066 5 N -0.304 5.304 6 C -0.089 4.089 7 C 0.299 3.701 8 O -0.373 6.373 9 N -0.303 5.303 10 C 0.158 3.842 11 C -0.336 4.336 12 C -0.059 4.059 13 C -0.299 4.299 14 C 0.149 3.851 15 C -0.508 4.508 16 H 0.102 0.898 17 C -0.179 4.179 18 N -0.428 5.428 19 Si 0.994 3.006 20 H -0.266 1.266 21 H -0.213 1.213 22 H -0.222 1.222 23 N -0.325 5.325 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.170 0.830 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.242 0.758 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.111 18.708 -8.511 20.661 hybrid contribution 0.788 -1.891 -1.572 2.582 sum 2.899 16.817 -10.083 19.821 Atomic orbital electron populations 1.21752 0.94300 1.02986 1.00788 1.21100 0.97081 0.95560 0.97587 1.21821 1.00734 0.95936 1.01970 1.22081 0.97409 0.88052 0.99041 1.60109 1.64269 1.01847 1.04176 1.21775 0.99221 0.91309 0.96626 1.20497 0.79557 0.87402 0.82683 1.90635 1.37016 1.77665 1.31962 1.43311 1.59591 1.06170 1.21276 1.18094 0.93272 0.82503 0.90348 1.21508 1.19249 0.96303 0.96500 1.20934 0.94498 0.93258 0.97203 1.21606 1.15406 0.99580 0.93345 1.18272 0.87300 0.86332 0.93177 1.20726 1.43345 0.95569 0.91161 0.89848 1.27786 0.88671 1.10463 0.90942 1.70643 1.31000 1.09411 1.31765 0.81775 0.78755 0.70165 0.69889 1.26638 1.21330 1.22185 1.65915 1.30158 1.07161 1.29272 0.91105 0.93084 0.93490 0.91277 0.92877 0.92478 0.92578 0.90755 0.95192 0.82957 0.87764 0.91924 0.75751 0.84396 0.87582 0.87657 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.08 37.16 0.34 -0.90 16 2 C -0.09 -0.74 3.06 -90.61 -0.28 -1.02 16 3 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 4 C 0.06 0.53 5.07 -3.82 -0.02 0.51 16 5 N -0.67 -7.30 5.58 -115.06 -0.64 -7.94 16 6 C 0.04 0.48 6.17 -4.98 -0.03 0.45 16 7 C 0.51 8.29 7.71 -10.99 -0.08 8.20 16 8 O -0.50 -9.68 13.00 5.56 0.07 -9.60 16 9 N -0.66 -11.98 5.41 -11.40 -0.06 -12.04 16 10 C 0.39 8.91 7.51 -154.98 -1.16 7.75 16 11 C -0.31 -7.01 8.83 -38.89 -0.34 -7.35 16 12 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 13 C -0.28 -6.66 9.83 -38.66 -0.38 -7.04 16 14 C 0.27 7.23 6.39 -85.00 -0.54 6.69 16 15 C -0.48 -13.03 9.58 -37.73 -0.36 -13.39 16 16 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 17 C 0.04 1.15 5.52 -17.34 -0.10 1.06 16 18 N -0.81 -21.99 13.65 55.55 0.76 -21.23 16 19 Si 1.16 28.02 25.53 -169.99 -4.34 23.68 16 20 H -0.33 -7.94 7.11 56.52 0.40 -7.54 16 21 H -0.29 -6.58 6.70 56.52 0.38 -6.20 16 22 H -0.29 -7.24 7.10 56.52 0.40 -6.84 16 23 N -0.60 -15.24 4.58 -10.26 -0.05 -15.28 16 24 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.23 8.14 -51.92 -0.42 -0.19 16 33 H 0.35 3.91 8.43 -39.29 -0.33 3.58 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.41 6.42 8.83 -40.82 -0.36 6.06 16 37 H 0.14 3.02 5.33 -52.50 -0.28 2.74 16 38 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 39 H 0.11 2.36 8.06 -52.48 -0.42 1.93 16 40 H 0.28 7.38 8.72 -40.82 -0.36 7.03 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -30.83 331.42 -8.33 -39.16 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.05 Total: 5.09 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.02 Total: -6.83 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.01 Total: -56.49 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 28.02 SS G_CDS: -4.34 Total: 23.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.83 -8.33 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337078336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.571 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds