Wall clock time and date at job start Thu Apr 9 2020 13:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46693 * 2 1 4 4 C 1.53001 * 109.46862 * 119.99564 * 2 1 3 5 5 N 1.46898 * 109.47243 * 65.00283 * 4 2 1 6 6 C 1.46901 * 111.00062 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47200 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99893 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00045 * 179.97438 * 7 6 5 10 10 C 1.39270 * 120.00181 * 185.60667 * 9 7 6 11 11 C 1.39676 * 119.57493 * 18.86973 * 10 9 7 12 12 C 1.38647 * 119.49846 * 180.02562 * 11 10 9 13 13 C 1.38352 * 118.66715 * 359.74169 * 12 11 10 14 14 C 1.40576 * 119.12889 * 0.50565 * 13 12 11 15 15 C 1.41336 * 119.78389 * 179.76817 * 14 13 12 16 16 H 1.07999 * 120.00309 * 7.00374 * 15 14 13 17 17 C 1.40029 * 119.99969 * 187.00093 * 15 14 13 18 18 N 1.30742 * 120.00396 * 181.89274 * 17 15 14 19 19 Si 1.86805 * 119.99629 * 1.89704 * 17 15 14 20 20 H 1.48504 * 109.46955 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47068 * 299.99751 * 19 17 15 22 22 H 1.48498 * 109.47442 * 59.99743 * 19 17 15 23 23 N 1.31901 * 119.57925 * 198.89825 * 10 9 7 24 24 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47351 * 299.99901 * 1 2 3 26 26 H 1.08996 * 109.46899 * 60.00700 * 1 2 3 27 27 H 1.08994 * 109.47263 * 239.99499 * 2 1 3 28 28 H 1.09004 * 109.46613 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46876 * 299.99314 * 3 2 1 30 30 H 1.08996 * 109.47423 * 60.00228 * 3 2 1 31 31 H 1.09000 * 109.47243 * 305.00155 * 4 2 1 32 32 H 1.09008 * 109.46952 * 185.00595 * 4 2 1 33 33 H 1.00901 * 110.99640 * 56.04738 * 5 4 2 34 34 H 1.08999 * 109.46655 * 60.00141 * 6 5 4 35 35 H 1.08995 * 109.47385 * 300.00235 * 6 5 4 36 36 H 0.96998 * 120.00529 * 5.61400 * 9 7 6 37 37 H 1.08005 * 120.24629 * 0.02562 * 11 10 9 38 38 H 1.08003 * 120.66881 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.43386 * 180.24780 * 13 12 11 40 40 H 0.97002 * 119.99843 * 354.83631 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 -2.1366 1.1906 6 6 2.1257 -2.8624 2.3764 7 6 1.7087 -4.3074 2.2811 8 8 1.0789 -4.6946 1.3198 9 7 2.0366 -5.1696 3.2636 10 6 1.7545 -6.5261 3.1226 11 6 1.5090 -7.0507 1.8516 12 6 1.2278 -8.4013 1.7130 13 6 1.2044 -9.1940 2.8467 14 6 1.4547 -8.6055 4.0985 15 6 1.4294 -9.4015 5.2662 16 1 1.3311 -10.4740 5.1866 17 6 1.5318 -8.7994 6.5263 18 7 1.5456 -9.5384 7.6047 19 14 1.6486 -6.9403 6.6664 20 1 1.7466 -6.5569 8.0977 21 1 2.8544 -6.4641 5.9421 22 1 0.4370 -6.3219 6.0707 23 7 1.7220 -7.2989 4.1910 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1264 -0.6442 1.2953 33 1 1.9883 -2.5692 0.3435 34 1 1.6920 -2.4178 3.2721 35 1 3.2126 -2.8003 2.4298 36 1 2.4690 -4.8455 4.0691 37 1 1.5381 -6.4090 0.9833 38 1 1.0355 -8.8269 0.7392 39 1 0.9924 -10.2504 2.7713 40 1 1.4098 -10.4965 7.5379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337078336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:10 Heat of formation + Delta-G solvation = -38.663707 kcal Electronic energy + Delta-G solvation = -20925.267887 eV Core-core repulsion = 17738.265713 eV Total energy + Delta-G solvation = -3187.002175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67011 -39.95042 -38.09280 -36.25686 -35.36404 -34.70533 -33.00270 -31.55287 -28.75079 -27.89776 -27.21154 -25.13660 -23.70569 -23.30101 -21.55337 -21.02990 -20.26428 -18.89737 -18.04867 -17.33156 -16.92811 -16.42157 -16.11159 -15.96316 -15.63852 -15.50630 -15.03815 -14.68660 -14.58602 -14.36877 -14.20025 -13.74281 -13.47914 -13.23684 -13.00836 -12.89266 -12.73545 -12.59891 -12.24882 -11.79114 -11.76230 -11.73380 -11.61767 -11.47965 -11.12535 -10.70600 -10.41394 -9.76514 -9.37708 -9.28059 -9.20684 -6.83411 0.50515 0.72264 1.55089 1.57704 1.70657 1.83899 2.06979 2.44371 2.67204 3.22698 3.53234 3.60665 3.95871 4.07551 4.10225 4.29591 4.33958 4.42376 4.43225 4.64897 4.68365 4.71833 4.79331 4.79777 4.84368 4.89079 5.10288 5.16600 5.31885 5.34460 5.37307 5.42828 5.48313 5.55927 5.70957 5.78283 5.91939 5.96832 6.29662 6.37043 6.42099 6.64492 7.08772 7.48704 7.94138 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.003770 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.073055 B = 7426.169585 C = 8185.755157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.066 3.934 5 N -0.688 5.688 6 C 0.055 3.945 7 C 0.513 3.487 8 O -0.533 6.533 9 N -0.655 5.655 10 C 0.378 3.622 11 C -0.308 4.308 12 C -0.028 4.028 13 C -0.294 4.294 14 C 0.257 3.743 15 C -0.508 4.508 16 H 0.068 0.932 17 C 0.013 3.987 18 N -0.829 5.829 19 Si 1.190 2.810 20 H -0.329 1.329 21 H -0.269 1.269 22 H -0.302 1.302 23 N -0.612 5.612 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.348 0.652 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.420 0.580 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 20.164 -11.285 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.062 4.062 5 N -0.321 5.321 6 C -0.077 4.077 7 C 0.302 3.698 8 O -0.408 6.408 9 N -0.303 5.303 10 C 0.147 3.853 11 C -0.332 4.332 12 C -0.052 4.052 13 C -0.317 4.317 14 C 0.132 3.868 15 C -0.541 4.541 16 H 0.086 0.914 17 C -0.204 4.204 18 N -0.452 5.452 19 Si 1.023 2.977 20 H -0.262 1.262 21 H -0.196 1.196 22 H -0.231 1.231 23 N -0.338 5.338 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.167 0.833 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.257 0.743 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.957 21.469 -9.847 23.803 hybrid contribution 0.492 -2.649 -1.399 3.036 sum 3.449 18.819 -11.245 22.193 Atomic orbital electron populations 1.21716 0.95205 1.01527 1.01147 1.21096 0.96248 0.96492 0.97380 1.21783 1.01171 0.94805 1.02312 1.22117 0.98314 0.86474 0.99334 1.60125 1.65006 1.02992 1.03928 1.21799 1.01075 0.87317 0.97513 1.21506 0.78113 0.88937 0.81251 1.90604 1.38446 1.78594 1.33131 1.43438 1.59708 1.04516 1.22602 1.18493 0.92473 0.84372 0.90003 1.21877 1.17699 0.96715 0.96875 1.21348 0.92661 0.92968 0.98239 1.21766 1.16163 1.00452 0.93269 1.18455 0.87459 0.87120 0.93753 1.20718 1.46050 0.95145 0.92162 0.91410 1.28612 0.88229 1.12714 0.90820 1.70667 1.33209 1.09403 1.31967 0.81378 0.78846 0.67491 0.69982 1.26232 1.19629 1.23110 1.65921 1.30443 1.07002 1.30467 0.93367 0.92989 0.92923 0.91576 0.92135 0.92183 0.92247 0.90349 0.93718 0.83338 0.85726 0.88798 0.74299 0.83289 0.83896 0.86797 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.08 71.98 0.65 -1.56 16 2 C -0.09 -1.25 3.06 -10.79 -0.03 -1.28 16 3 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 4 C 0.07 0.90 5.07 86.30 0.44 1.34 16 5 N -0.69 -13.03 5.58 -517.94 -2.89 -15.92 16 6 C 0.05 1.01 6.17 85.56 0.53 1.54 16 7 C 0.51 15.19 7.71 87.66 0.68 15.86 16 8 O -0.53 -19.52 13.00 -3.01 -0.04 -19.56 16 9 N -0.66 -22.21 5.41 -308.37 -1.67 -23.88 16 10 C 0.38 16.67 7.51 133.25 1.00 17.67 16 11 C -0.31 -13.20 8.83 22.72 0.20 -13.00 16 12 C -0.03 -1.18 10.15 22.39 0.23 -0.95 16 13 C -0.29 -13.98 9.83 22.87 0.22 -13.75 16 14 C 0.26 13.66 6.39 40.19 0.26 13.91 16 15 C -0.51 -28.59 9.58 23.47 0.22 -28.37 16 16 H 0.07 3.88 8.05 -2.91 -0.02 3.85 16 17 C 0.01 0.70 5.52 85.29 0.47 1.17 16 18 N -0.83 -46.35 13.65 21.84 0.30 -46.05 16 19 Si 1.19 56.59 25.53 68.60 1.75 58.34 16 20 H -0.33 -15.23 7.11 99.48 0.71 -14.52 16 21 H -0.27 -11.90 6.70 99.48 0.67 -11.23 16 22 H -0.30 -14.65 7.10 99.48 0.71 -13.94 16 23 N -0.61 -30.57 4.58 -186.36 -0.85 -31.42 16 24 H 0.05 0.99 7.75 -2.38 -0.02 0.97 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.35 6.96 8.43 -89.69 -0.76 6.20 16 34 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.42 12.00 8.83 -92.71 -0.82 11.18 16 37 H 0.15 6.15 5.33 -3.15 -0.02 6.13 16 38 H 0.14 4.88 8.06 -2.91 -0.02 4.85 16 39 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 40 H 0.28 15.20 8.72 -92.71 -0.81 14.39 16 Total: -1.00 -66.70 331.42 1.52 -65.18 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.60 Total: 21.55 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 5.53 Total: -8.23 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -5.11 Total: -117.27 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.04 Total: -19.56 kcal Atomic # 14 Polarization: 56.59 SS G_CDS: 1.75 Total: 58.34 kcal Total: -66.70 1.52 -65.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337078336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.515 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds