Wall clock time and date at job start Thu Apr 9 2020 13:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47035 * 2 1 4 4 C 1.53001 * 109.47224 * 239.99999 * 2 1 3 5 5 N 1.46907 * 109.46847 * 120.00047 * 2 1 3 6 6 C 1.46896 * 110.99948 * 59.99999 * 5 2 1 7 7 C 1.50700 * 109.46782 * 179.97438 * 6 5 2 8 8 O 1.21276 * 120.00316 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99659 * 179.97438 * 7 6 5 10 10 C 1.39475 * 120.00058 * 184.87146 * 9 7 6 11 11 C 1.38589 * 119.58120 * 182.94614 * 10 9 7 12 12 C 1.40813 * 118.79406 * 179.70006 * 11 10 9 13 13 C 1.41550 * 120.99641 * 180.25456 * 12 11 10 14 14 H 1.07999 * 120.00002 * 154.03193 * 13 12 11 15 15 C 1.40029 * 119.99998 * 334.03763 * 13 12 11 16 16 N 1.30736 * 120.00307 * 163.02668 * 15 13 12 17 17 Si 1.86806 * 119.99947 * 343.02242 * 15 13 12 18 18 H 1.48496 * 109.47082 * 95.20761 * 17 15 13 19 19 H 1.48502 * 109.47287 * 215.21056 * 17 15 13 20 20 H 1.48504 * 109.46767 * 335.20605 * 17 15 13 21 21 C 1.41170 * 118.00675 * 0.28053 * 12 11 10 22 22 C 1.37586 * 119.01672 * 359.97438 * 21 12 11 23 23 N 1.32082 * 121.10984 * 0.02844 * 22 21 12 24 24 H 1.08999 * 109.47701 * 300.00025 * 1 2 3 25 25 H 1.08998 * 109.47466 * 60.00293 * 1 2 3 26 26 H 1.09006 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46844 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46907 * 299.99612 * 3 2 1 29 29 H 1.08998 * 109.47013 * 60.00262 * 3 2 1 30 30 H 1.09006 * 109.47038 * 299.99789 * 4 2 1 31 31 H 1.08997 * 109.47495 * 59.99912 * 4 2 1 32 32 H 1.09002 * 109.47228 * 180.02562 * 4 2 1 33 33 H 1.00903 * 110.99360 * 183.95410 * 5 2 1 34 34 H 1.09004 * 109.47086 * 59.99843 * 6 5 2 35 35 H 1.08998 * 109.47352 * 299.99999 * 6 5 2 36 36 H 0.96997 * 120.00311 * 4.87422 * 9 7 6 37 37 H 1.07995 * 120.60528 * 359.97438 * 11 10 9 38 38 H 0.96999 * 120.00271 * 180.02562 * 16 15 13 39 39 H 1.08002 * 120.48938 * 179.97438 * 21 12 11 40 40 H 1.07999 * 119.44565 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.5485 -2.0835 1.2334 7 6 2.0701 -2.7603 2.4748 8 8 2.7653 -2.1445 3.2546 9 7 1.7631 -4.0498 2.7187 10 6 2.1598 -4.6467 3.9152 11 6 1.8933 -5.9895 4.1312 12 6 2.3068 -6.5768 5.3423 13 6 2.0635 -7.9455 5.6092 14 1 2.7054 -8.4854 6.2895 15 6 0.9907 -8.5995 4.9909 16 7 0.9505 -9.9059 4.9619 17 14 -0.3831 -7.6051 4.2075 18 1 -0.1119 -7.4437 2.7565 19 1 -1.6750 -8.3132 4.3940 20 1 -0.4544 -6.2680 4.8496 21 6 2.9708 -5.7596 6.2826 22 6 3.1859 -4.4346 5.9811 23 7 2.7820 -3.9217 4.8329 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 3.0261 -0.6501 1.2559 34 1 1.9120 -2.6118 0.3519 35 1 0.4587 -2.0980 1.2419 36 1 1.2663 -4.5627 2.0623 37 1 1.3818 -6.5759 3.3823 38 1 0.2075 -10.3589 4.5333 39 1 3.3049 -6.1685 7.2248 40 1 3.6936 -3.8032 6.6953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340480552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:18 Heat of formation + Delta-G solvation = 1.223860 kcal Electronic energy + Delta-G solvation = -21218.763844 eV Core-core repulsion = 18033.491324 eV Total energy + Delta-G solvation = -3185.272520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90739 -38.60533 -37.55051 -34.39528 -33.79341 -32.05252 -31.30499 -29.10394 -27.73669 -27.55390 -26.16746 -25.72319 -22.40097 -21.56874 -19.77949 -19.40871 -17.74932 -17.41824 -16.17640 -15.79347 -15.54408 -15.14177 -14.92579 -14.51053 -14.34520 -14.02309 -13.74076 -13.41399 -13.09522 -12.95392 -12.85745 -12.56167 -12.31215 -12.03964 -11.91500 -11.72680 -11.54863 -11.25655 -10.98372 -10.92733 -10.83920 -10.71582 -10.01226 -9.86236 -9.53603 -9.35303 -8.51971 -8.25571 -7.85901 -7.24611 -7.10464 -4.75948 2.29920 2.61891 2.96505 3.06577 3.21075 3.27631 3.35748 3.85198 4.10765 4.54753 4.58068 4.67485 4.89848 4.92303 5.16605 5.25836 5.34133 5.38271 5.43055 5.54022 5.60475 5.65102 5.66631 5.77822 5.82948 6.03018 6.10081 6.29455 6.36862 6.39645 6.56514 6.84112 6.93147 7.12497 7.25239 7.27084 7.57370 7.74079 8.02871 8.18478 8.41449 8.62763 8.71350 9.46332 9.90531 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.004129 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.280810 B = 6779.540927 C = 7528.839465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 C -0.138 4.138 4 C -0.185 4.185 5 N -0.660 5.660 6 C 0.035 3.965 7 C 0.497 3.503 8 O -0.462 6.462 9 N -0.666 5.666 10 C 0.371 3.629 11 C -0.324 4.324 12 C 0.127 3.873 13 C -0.435 4.435 14 H 0.095 0.905 15 C 0.085 3.915 16 N -0.798 5.798 17 Si 0.919 3.081 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.243 1.243 21 C -0.274 4.274 22 C 0.129 3.871 23 N -0.556 5.556 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.351 0.649 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.406 0.594 37 H 0.106 0.894 38 H 0.288 0.712 39 H 0.109 0.891 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 13.117 -12.241 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 C -0.195 4.195 4 C -0.244 4.244 5 N -0.293 5.293 6 C -0.097 4.097 7 C 0.281 3.719 8 O -0.330 6.330 9 N -0.313 5.313 10 C 0.144 3.856 11 C -0.349 4.349 12 C 0.119 3.881 13 C -0.465 4.465 14 H 0.113 0.887 15 C -0.136 4.136 16 N -0.422 5.422 17 Si 0.746 3.254 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.167 1.167 21 C -0.298 4.298 22 C -0.023 4.023 23 N -0.276 5.276 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.171 0.829 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.241 0.759 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.609 14.519 -11.482 18.694 hybrid contribution -0.533 -1.607 -1.302 2.136 sum -3.142 12.912 -12.784 18.439 Atomic orbital electron populations 1.21911 0.93822 1.02036 1.02185 1.20993 0.95662 0.94383 0.87668 1.21801 1.01018 0.94522 1.02204 1.22605 1.01425 1.01242 0.99108 1.60321 1.17504 1.12656 1.38833 1.21921 1.02154 0.90162 0.95471 1.20598 0.81736 0.81661 0.87943 1.90788 1.33349 1.62682 1.46180 1.43541 1.56723 1.12350 1.18716 1.17990 0.93481 0.88298 0.85824 1.21146 1.18532 0.94063 1.01208 1.17669 0.88356 0.92926 0.89185 1.19533 1.11418 0.92561 1.22940 0.88680 1.26228 0.99643 0.94955 0.92774 1.69638 1.30210 1.09491 1.32818 0.86213 0.78288 0.81471 0.79454 1.19799 1.21877 1.16663 1.21867 1.12152 0.94880 1.00888 1.21895 0.95195 0.92832 0.92355 1.67320 1.19485 1.37635 1.03156 0.91579 0.92315 0.92602 0.92651 0.92181 0.91555 0.92287 0.91968 0.92521 0.82899 0.92276 0.88019 0.75948 0.87653 0.90138 0.87250 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.24 37.16 0.31 -0.93 16 2 C 0.10 0.96 0.97 -131.60 -0.13 0.84 16 3 C -0.14 -1.16 8.73 37.16 0.32 -0.83 16 4 C -0.18 -1.50 8.23 37.16 0.31 -1.19 16 5 N -0.66 -8.04 5.71 -101.22 -0.58 -8.62 16 6 C 0.04 0.44 5.38 -4.98 -0.03 0.41 16 7 C 0.50 8.76 7.82 -10.99 -0.09 8.68 16 8 O -0.46 -10.10 14.47 5.56 0.08 -10.02 16 9 N -0.67 -12.27 5.39 -11.49 -0.06 -12.33 16 10 C 0.37 8.56 7.41 -154.70 -1.15 7.42 16 11 C -0.32 -7.73 7.01 -38.48 -0.27 -8.00 16 12 C 0.13 3.20 5.23 -106.55 -0.56 2.65 16 13 C -0.43 -11.43 9.66 -37.65 -0.36 -11.80 16 14 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 15 C 0.08 2.15 5.45 -17.35 -0.09 2.05 16 16 N -0.80 -20.40 13.92 55.55 0.77 -19.63 16 17 Si 0.92 19.97 24.42 -169.99 -4.15 15.82 16 18 H -0.27 -5.51 6.70 56.52 0.38 -5.13 16 19 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.24 -5.56 6.66 56.52 0.38 -5.18 16 21 C -0.27 -6.45 9.90 -38.71 -0.38 -6.83 16 22 C 0.13 2.95 11.15 -17.68 -0.20 2.76 16 23 N -0.56 -13.58 7.87 -12.52 -0.10 -13.68 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.47 6.41 -51.93 -0.33 0.14 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.35 4.49 8.42 -39.29 -0.33 4.16 16 34 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16 35 H 0.10 1.12 6.30 -51.93 -0.33 0.79 16 36 H 0.41 5.97 8.69 -40.82 -0.35 5.61 16 37 H 0.11 2.40 4.23 -52.49 -0.22 2.18 16 38 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 39 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -30.97 323.65 -7.11 -38.08 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.64 Total: 10.28 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.32 Total: -4.78 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.03 Total: -54.26 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.15 Total: 15.82 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.97 -7.11 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340480552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.302 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds