Wall clock time and date at job start Thu Apr 9 2020 13:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47279 * 2 1 4 4 C 1.52998 * 109.47279 * 179.97438 * 3 2 1 5 5 C 1.50692 * 109.47157 * 180.02562 * 4 3 2 6 6 C 1.38114 * 120.40369 * 125.00115 * 5 4 3 7 7 C 1.39623 * 118.33759 * 180.02562 * 6 5 4 8 8 N 1.38547 * 120.53213 * 179.97438 * 7 6 5 9 9 C 1.47962 * 110.99841 * 179.97438 * 8 7 6 10 10 C 1.53939 * 86.17954 * 222.41446 * 9 8 7 11 11 O 1.42901 * 113.73443 * 269.25769 * 10 9 8 12 12 C 1.50699 * 113.73181 * 138.07765 * 10 9 8 13 13 H 1.07999 * 120.00015 * 4.91121 * 12 10 9 14 14 C 1.37879 * 119.99686 * 184.90847 * 12 10 9 15 15 N 1.31521 * 119.99972 * 13.82310 * 14 12 10 16 16 Si 1.86792 * 119.99875 * 193.81760 * 14 12 10 17 17 H 1.48504 * 109.47216 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47601 * 300.00327 * 16 14 12 19 19 H 1.48506 * 109.47155 * 60.00602 * 16 14 12 20 20 C 1.47957 * 111.00055 * 80.63848 * 8 7 6 21 21 N 1.32988 * 118.93548 * 0.24880 * 7 6 5 22 22 C 1.31746 * 120.68797 * 359.48837 * 21 7 6 23 23 N 1.31791 * 121.83235 * 0.53502 * 22 21 7 24 24 H 1.09000 * 109.47346 * 59.99876 * 1 2 3 25 25 H 1.08994 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47081 * 300.00234 * 1 2 3 27 27 H 1.09007 * 109.46975 * 240.00526 * 2 1 3 28 28 H 1.09000 * 109.47346 * 120.00124 * 2 1 3 29 29 H 1.09000 * 109.46560 * 59.99655 * 3 2 1 30 30 H 1.09000 * 109.47032 * 300.00316 * 3 2 1 31 31 H 1.09002 * 109.46709 * 60.00142 * 4 3 2 32 32 H 1.09000 * 109.47346 * 300.00124 * 4 3 2 33 33 H 1.08002 * 120.83163 * 0.04127 * 6 5 4 34 34 H 1.08999 * 113.76019 * 108.10025 * 9 8 7 35 35 H 1.09000 * 113.85879 * 336.74797 * 9 8 7 36 36 H 0.96693 * 113.99776 * 171.47023 * 11 10 9 37 37 H 0.97001 * 119.99982 * 5.87544 * 15 14 12 38 38 H 1.08994 * 113.76072 * 23.26172 * 20 8 7 39 39 H 1.09001 * 113.75391 * 251.90112 * 20 8 7 40 40 H 1.08001 * 119.08531 * 180.26247 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.9491 3.2942 0.9775 7 6 5.3866 4.6195 0.9372 8 7 6.2658 5.0999 1.8942 9 6 6.5882 6.5234 1.6509 10 6 8.0424 6.1444 1.9847 11 8 8.3701 6.2843 3.3686 12 6 9.0596 6.7808 1.0729 13 1 8.7440 7.4953 0.3270 14 6 10.3931 6.4509 1.1910 15 7 10.7505 5.3995 1.8956 16 14 11.6920 7.4973 0.3501 17 1 13.0378 6.9347 0.6291 18 1 11.4519 7.5015 -1.1154 19 1 11.6192 8.8873 0.8677 20 6 7.6579 4.7107 1.5783 21 7 4.9415 5.4148 -0.0313 22 6 4.1091 4.9600 -0.9455 23 7 3.6776 3.7147 -0.9348 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 5.2880 2.6228 1.7526 34 1 6.1359 7.2054 2.3709 35 1 6.4425 6.8381 0.6176 36 1 9.2365 5.9265 3.6057 37 1 10.0743 4.8078 2.2610 38 1 7.8245 4.4936 0.5233 39 1 8.0603 3.9439 2.2402 40 1 3.7673 5.6273 -1.7229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348550353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:24 Heat of formation + Delta-G solvation = 21.767526 kcal Electronic energy + Delta-G solvation = -21237.666653 eV Core-core repulsion = 18053.284974 eV Total energy + Delta-G solvation = -3184.381680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18688 -39.20331 -36.27386 -35.04457 -33.29404 -32.32627 -31.85793 -29.75687 -27.52216 -25.73439 -25.12610 -24.09066 -23.49788 -21.48211 -20.85538 -19.11289 -18.17346 -17.31329 -16.51639 -15.71591 -15.34172 -15.21317 -15.05868 -14.54449 -14.36742 -13.88441 -13.75051 -13.73955 -13.31127 -13.04113 -12.48189 -12.40814 -12.14374 -11.61889 -11.47603 -11.27601 -11.18993 -11.05771 -10.90577 -10.80215 -10.70218 -10.52118 -10.19637 -10.08646 -9.56726 -9.25907 -9.04449 -8.79000 -8.64509 -7.95837 -6.64539 -4.42767 1.15452 1.25622 3.32529 3.36029 3.54251 3.84034 4.03843 4.15932 4.34679 4.36406 4.70551 4.75609 4.85845 4.87131 5.02868 5.13201 5.22765 5.41241 5.46868 5.53156 5.54983 5.61923 5.65282 5.73482 5.76617 5.78519 5.90309 5.93346 6.08336 6.14105 6.18459 6.29814 6.45105 6.55392 6.68638 6.96633 7.31092 7.59953 7.72316 8.14503 8.34075 8.49601 8.91201 9.27168 10.66780 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033640 B = 0.003524 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.153099 B = 7943.475599 C = 8040.156299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.068 4.068 5 C 0.181 3.819 6 C -0.229 4.229 7 C 0.338 3.662 8 N -0.440 5.440 9 C 0.035 3.965 10 C 0.223 3.777 11 O -0.563 6.563 12 C -0.616 4.616 13 H 0.063 0.937 14 C 0.035 3.965 15 N -0.899 5.899 16 Si 1.066 2.934 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.283 1.283 20 C -0.001 4.001 21 N -0.553 5.553 22 C 0.313 3.687 23 N -0.543 5.543 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.373 0.627 37 H 0.268 0.732 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.790 -8.499 -4.034 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.106 4.106 5 C 0.037 3.963 6 C -0.253 4.253 7 C 0.099 3.901 8 N -0.159 5.159 9 C -0.092 4.092 10 C 0.182 3.818 11 O -0.370 6.370 12 C -0.654 4.654 13 H 0.081 0.919 14 C -0.170 4.170 15 N -0.536 5.536 16 Si 0.893 3.107 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.209 1.209 20 C -0.128 4.128 21 N -0.272 5.272 22 C 0.024 3.976 23 N -0.260 5.260 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.221 0.779 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.330 -7.632 -4.225 15.931 hybrid contribution -0.698 -0.828 0.089 1.086 sum -14.028 -8.460 -4.135 16.896 Atomic orbital electron populations 1.21764 0.95880 1.01439 1.01898 1.21545 0.95925 0.96714 1.02040 1.21514 0.93478 0.96825 1.03004 1.20583 0.96637 0.89913 1.03494 1.21441 0.90183 0.95969 0.88721 1.22248 1.03034 0.97145 1.02903 1.21143 0.91819 0.89875 0.87250 1.65945 1.05823 1.09376 1.34739 1.24084 0.95229 0.87658 1.02276 1.20076 0.92121 0.88579 0.81046 1.86259 1.40249 1.84339 1.26144 1.22304 0.93899 1.28857 1.20307 0.91851 1.25981 0.98754 0.96850 0.95454 1.70929 1.37648 1.11929 1.33056 0.83601 0.75722 0.75626 0.75795 1.20549 1.21216 1.20947 1.25064 0.83414 1.03702 1.00581 1.68464 1.15052 1.39641 1.04090 1.24731 0.88543 0.90054 0.94321 1.68171 1.27269 1.04504 1.26055 0.92687 0.92859 0.92805 0.91890 0.92016 0.92184 0.90675 0.89582 0.90051 0.83942 0.90203 0.87831 0.77854 0.91996 0.90882 0.90150 0.79135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -1.08 5.08 -26.73 -0.14 -1.21 16 4 C -0.07 -0.73 5.64 -27.89 -0.16 -0.89 16 5 C 0.18 2.62 6.20 -82.33 -0.51 2.11 16 6 C -0.23 -3.75 9.68 -39.11 -0.38 -4.13 16 7 C 0.34 6.51 5.89 -154.77 -0.91 5.60 16 8 N -0.44 -9.33 6.26 -176.47 -1.10 -10.43 16 9 C 0.03 0.78 7.05 -2.76 -0.02 0.77 16 10 C 0.22 5.50 1.08 -90.86 -0.10 5.40 16 11 O -0.56 -14.28 13.45 -35.23 -0.47 -14.75 16 12 C -0.62 -16.43 8.56 -34.44 -0.29 -16.72 16 13 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 14 C 0.04 0.93 5.26 -17.82 -0.09 0.84 16 15 N -0.90 -24.49 12.80 55.43 0.71 -23.78 16 16 Si 1.07 23.62 29.93 -169.99 -5.09 18.53 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.00 -0.03 6.32 -2.79 -0.02 -0.04 16 21 N -0.55 -10.28 8.37 -13.81 -0.12 -10.39 16 22 C 0.31 4.90 12.28 -92.20 -1.13 3.76 16 23 N -0.54 -8.26 10.03 -10.88 -0.11 -8.37 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.80 7.98 -51.93 -0.41 0.39 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 33 H 0.14 2.11 8.00 -52.49 -0.42 1.69 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 35 H 0.10 2.33 6.66 -51.93 -0.35 1.98 16 36 H 0.37 9.24 6.95 45.56 0.32 9.56 16 37 H 0.27 7.13 5.52 -40.82 -0.23 6.91 16 38 H 0.07 1.71 7.85 -51.93 -0.41 1.30 16 39 H 0.08 1.75 7.79 -51.93 -0.40 1.35 16 40 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -29.18 330.79 -10.06 -39.24 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.33 Total: 11.39 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.54 Total: -6.41 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.62 Total: -52.98 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.47 Total: -14.75 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.09 Total: 18.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.18 -10.06 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348550353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.009 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds