Wall clock time and date at job start Thu Apr 9 2020 13:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39638 * 127.32791 * 2 1 4 4 N 1.30879 * 107.87931 * 179.97438 * 3 2 1 5 5 N 1.28442 * 110.95022 * 359.73899 * 4 3 2 6 6 C 1.46497 * 125.19459 * 180.26424 * 5 4 3 7 7 C 1.36644 * 109.61001 * 0.41981 * 5 4 3 8 8 C 1.47028 * 126.89425 * 179.85166 * 7 5 4 9 9 O 1.21679 * 119.99867 * 264.43566 * 8 7 5 10 10 N 1.34771 * 119.99737 * 84.43207 * 8 7 5 11 11 C 1.36844 * 120.00054 * 184.23634 * 10 8 7 12 12 H 1.07991 * 120.00119 * 133.58140 * 11 10 8 13 13 C 1.39050 * 119.99589 * 313.57523 * 11 10 8 14 14 N 1.31371 * 119.99561 * 162.10177 * 13 11 10 15 15 Si 1.86795 * 120.00416 * 342.10836 * 13 11 10 16 16 H 1.48501 * 109.47637 * 95.04254 * 15 13 11 17 17 H 1.48500 * 109.47215 * 215.04253 * 15 13 11 18 18 H 1.48503 * 109.47150 * 335.04185 * 15 13 11 19 19 C 1.46504 * 120.00363 * 4.23968 * 10 8 7 20 20 C 1.55236 * 110.46733 * 232.12271 * 19 10 8 21 21 C 1.54887 * 102.58610 * 203.38869 * 20 19 10 22 22 C 1.54269 * 104.31201 * 37.93047 * 21 20 19 23 23 C 1.53875 * 106.59893 * 336.32423 * 22 21 20 24 24 H 1.09005 * 109.46904 * 270.02931 * 1 2 3 25 25 H 1.09007 * 109.47144 * 30.02151 * 1 2 3 26 26 H 1.09000 * 109.47589 * 150.02564 * 1 2 3 27 27 H 1.08000 * 126.06067 * 359.94235 * 3 2 1 28 28 H 1.09001 * 109.46915 * 274.90422 * 6 5 4 29 29 H 1.09000 * 109.47457 * 34.89893 * 6 5 4 30 30 H 1.09001 * 109.47276 * 154.90322 * 6 5 4 31 31 H 0.97001 * 119.99921 * 180.02562 * 14 13 11 32 32 H 1.08999 * 110.43025 * 354.76763 * 19 10 8 33 33 H 1.08997 * 110.89647 * 85.10189 * 20 19 10 34 34 H 1.08992 * 110.76521 * 321.62012 * 20 19 10 35 35 H 1.09002 * 110.49249 * 279.18708 * 21 20 19 36 36 H 1.08998 * 110.48614 * 156.67517 * 21 20 19 37 37 H 1.08999 * 110.03184 * 95.60837 * 22 21 20 38 38 H 1.08999 * 110.03287 * 216.98858 * 22 21 20 39 39 H 1.08999 * 110.03113 * 119.28693 * 23 22 21 40 40 H 1.09000 * 110.02782 * 240.66654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3537 1.1104 0.0000 4 7 3.5878 0.6746 0.0006 5 7 3.6215 -0.6094 0.0064 6 6 4.8404 -1.4220 0.0142 7 6 2.3468 -1.1016 0.0007 8 6 1.9469 -2.5164 0.0014 9 8 1.6886 -3.0761 -1.0477 10 7 1.8666 -3.1934 1.1640 11 6 1.5792 -4.5313 1.1583 12 1 2.1610 -5.2111 1.7629 13 6 0.5379 -5.0153 0.3740 14 7 0.4737 -6.2952 0.0849 15 14 -0.7693 -3.8458 -0.2684 16 1 -0.4110 -3.4089 -1.6417 17 1 -2.0826 -4.5384 -0.2961 18 1 -0.8536 -2.6603 0.6220 19 6 2.0868 -2.4969 2.4339 20 6 3.1502 -3.2423 3.2845 21 6 2.8158 -2.7793 4.7242 22 6 1.2747 -2.7174 4.7567 23 6 0.8112 -2.5379 3.3004 24 1 -0.3633 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 2.0450 2.1453 -0.0009 28 1 5.1949 -1.5550 -1.0079 29 1 5.6083 -0.9197 0.6026 30 1 4.6249 -2.3960 0.4537 31 1 -0.2525 -6.6328 -0.4625 32 1 2.3932 -1.4664 2.2546 33 1 4.1576 -2.9348 3.0040 34 1 3.0339 -4.3218 3.1891 35 1 3.2413 -1.7944 4.9168 36 1 3.1840 -3.5019 5.4525 37 1 0.8723 -3.6445 5.1650 38 1 0.9477 -1.8709 5.3605 39 1 0.1839 -3.3778 3.0021 40 1 0.2585 -1.6041 3.1970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353916950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:27 Heat of formation + Delta-G solvation = 50.176388 kcal Electronic energy + Delta-G solvation = -23328.910438 eV Core-core repulsion = 20145.760659 eV Total energy + Delta-G solvation = -3183.149779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11092 -39.09595 -37.07689 -33.76889 -33.60833 -32.15679 -31.22563 -28.26614 -28.15449 -27.18397 -25.89674 -24.96536 -21.85206 -20.53837 -20.21428 -19.87855 -19.03967 -17.61194 -16.49454 -15.92104 -15.56138 -15.24723 -14.74562 -14.16896 -14.04608 -13.56771 -13.21581 -13.11706 -13.10382 -12.90809 -12.77488 -12.23982 -12.18049 -12.03708 -11.88494 -11.51129 -11.29041 -10.84848 -10.76816 -10.61228 -10.44180 -10.30973 -10.01837 -9.96319 -9.80668 -8.92248 -8.66801 -8.62879 -8.18995 -7.67353 -6.28381 -4.10042 2.17176 2.69589 3.00796 3.25287 3.42629 3.60179 3.74335 4.28284 4.48415 4.78868 4.95985 5.04175 5.10994 5.28866 5.30514 5.37447 5.40164 5.56169 5.59670 5.72158 5.73820 5.90619 5.95929 5.99454 6.01741 6.04589 6.07275 6.24815 6.26365 6.29221 6.42400 6.49422 6.68437 6.75852 6.89975 6.96136 7.13514 7.74663 7.91516 8.44120 8.65543 8.74326 9.31190 9.67026 10.76084 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.010530 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.871119 B = 2658.557035 C = 3481.551405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.184 4.184 3 C 0.002 3.998 4 N -0.301 5.301 5 N -0.278 5.278 6 C 0.091 3.909 7 C 0.010 3.990 8 C 0.514 3.486 9 O -0.529 6.529 10 N -0.437 5.437 11 C -0.346 4.346 12 H 0.101 0.899 13 C 0.095 3.905 14 N -0.861 5.861 15 Si 0.897 3.103 16 H -0.256 1.256 17 H -0.306 1.306 18 H -0.267 1.267 19 C 0.127 3.873 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.132 4.132 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.179 0.821 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.273 0.727 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 10.609 6.514 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.195 4.195 3 C -0.176 4.176 4 N -0.132 5.132 5 N -0.066 5.066 6 C -0.050 4.050 7 C -0.119 4.119 8 C 0.300 3.700 9 O -0.409 6.409 10 N -0.158 5.158 11 C -0.472 4.472 12 H 0.118 0.882 13 C -0.115 4.115 14 N -0.495 5.495 15 Si 0.727 3.273 16 H -0.182 1.182 17 H -0.235 1.235 18 H -0.192 1.192 19 C 0.023 3.977 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.170 4.170 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.196 0.804 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.744 10.387 5.900 12.854 hybrid contribution -1.467 0.294 -0.348 1.536 sum 3.277 10.681 5.553 12.476 Atomic orbital electron populations 1.20156 0.89163 1.02354 1.01789 1.20629 0.96598 0.91111 1.11118 1.23271 0.88054 0.99430 1.06853 1.73017 1.24307 0.93679 1.22162 1.45481 1.05767 1.03511 1.51820 1.22107 0.83674 0.94966 1.04256 1.21927 0.85172 0.96215 1.08629 1.17190 0.83929 0.83420 0.85424 1.90699 1.51558 1.67454 1.31215 1.43581 1.61189 1.08834 1.02184 1.18684 1.17069 0.79695 1.31758 0.88162 1.25375 0.96859 0.95468 0.93803 1.69709 1.31415 1.14233 1.34127 0.86592 0.78165 0.80834 0.81694 1.18183 1.23527 1.19242 1.22093 0.95085 0.95039 0.85531 1.22832 0.97455 1.02505 0.93837 1.22277 0.96086 1.00434 0.97117 1.22040 0.95562 1.01145 0.96805 1.22426 0.98279 1.02398 0.93887 0.91733 0.91576 0.91886 0.80416 0.90029 0.88983 0.88471 0.91678 0.90903 0.92587 0.89350 0.92364 0.91959 0.91826 0.92609 0.89552 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.24 36.01 0.37 -0.94 16 2 C -0.18 -3.43 6.30 -104.00 -0.65 -4.08 16 3 C 0.00 0.03 12.00 -17.44 -0.21 -0.18 16 4 N -0.30 -5.23 11.90 30.58 0.36 -4.87 16 5 N -0.28 -5.02 3.75 -63.88 -0.24 -5.26 16 6 C 0.09 1.30 11.21 59.85 0.67 1.97 16 7 C 0.01 0.21 4.59 -82.06 -0.38 -0.17 16 8 C 0.51 12.35 5.00 -12.70 -0.06 12.28 16 9 O -0.53 -14.92 12.73 5.21 0.07 -14.85 16 10 N -0.44 -10.07 2.12 -107.13 -0.23 -10.30 16 11 C -0.35 -9.15 8.14 -15.01 -0.12 -9.27 16 12 H 0.10 2.74 6.64 -52.49 -0.35 2.39 16 13 C 0.10 2.69 4.88 -17.45 -0.09 2.61 16 14 N -0.86 -25.41 13.95 55.50 0.77 -24.63 16 15 Si 0.90 23.44 23.71 -169.99 -4.03 19.41 16 16 H -0.26 -7.17 6.39 56.52 0.36 -6.81 16 17 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 18 H -0.27 -6.52 6.49 56.52 0.37 -6.15 16 19 C 0.13 2.39 3.17 -66.09 -0.21 2.18 16 20 C -0.13 -2.10 6.41 -24.55 -0.16 -2.25 16 21 C -0.12 -1.64 6.82 -25.07 -0.17 -1.81 16 22 C -0.12 -1.68 6.80 -25.61 -0.17 -1.85 16 23 C -0.13 -2.33 6.43 -25.62 -0.16 -2.49 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 1.25 6.18 -51.93 -0.32 0.93 16 27 H 0.18 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.10 1.47 7.66 -51.93 -0.40 1.07 16 31 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.07 1.35 6.31 -51.93 -0.33 1.02 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.63 6.29 -51.93 -0.33 1.30 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.76 7.24 -51.93 -0.38 1.39 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -32.55 318.25 -5.80 -38.35 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.96 Total: 1.37 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.35 Total: -4.02 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.67 Total: -45.06 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.07 Total: -14.85 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.03 Total: 19.41 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.55 -5.80 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353916950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.527 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds