Wall clock time and date at job start Thu Apr 9 2020 13:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29948 * 126.28802 * 2 1 4 4 O 1.21305 * 110.25023 * 180.02562 * 3 2 1 5 5 C 1.33641 * 109.81227 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.55219 * 179.97438 * 5 4 3 7 7 C 1.53782 * 113.61823 * 60.01836 * 6 5 4 8 8 C 1.53775 * 87.08530 * 220.02514 * 7 6 5 9 9 N 1.46900 * 113.61852 * 139.98187 * 8 7 6 10 10 C 1.46901 * 110.99877 * 156.44121 * 9 8 7 11 11 C 1.53003 * 109.46731 * 184.62599 * 10 9 8 12 12 C 1.50697 * 115.55015 * 294.69124 * 11 10 9 13 13 H 1.08001 * 119.99670 * 92.57159 * 12 11 10 14 14 C 1.37877 * 120.00344 * 272.57728 * 12 11 10 15 15 N 1.31521 * 119.99925 * 183.56323 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 3.55621 * 14 12 11 17 17 H 1.48496 * 109.47003 * 266.19259 * 16 14 12 18 18 H 1.48504 * 109.46651 * 26.19115 * 16 14 12 19 19 H 1.48491 * 109.46948 * 146.18797 * 16 14 12 20 20 C 1.53000 * 117.50080 * 80.36805 * 11 10 9 21 21 C 1.53000 * 117.49743 * 149.02624 * 11 10 9 22 22 C 1.53783 * 87.08442 * 25.42865 * 8 7 6 23 23 N 1.31132 * 106.89775 * 0.22170 * 5 4 3 24 24 H 1.08998 * 109.47032 * 89.97214 * 1 2 3 25 25 H 1.08997 * 109.46934 * 209.97329 * 1 2 3 26 26 H 1.08999 * 109.47186 * 329.97324 * 1 2 3 27 27 H 1.08997 * 112.91022 * 191.26992 * 6 5 4 28 28 H 1.08994 * 113.61462 * 105.46979 * 7 6 5 29 29 H 1.09005 * 113.68835 * 334.58180 * 7 6 5 30 30 H 1.09002 * 113.60998 * 270.79916 * 8 7 6 31 31 H 1.00898 * 111.00092 * 280.39068 * 9 8 7 32 32 H 1.08999 * 109.47455 * 64.62361 * 10 9 8 33 33 H 1.09001 * 109.47428 * 304.62330 * 10 9 8 34 34 H 0.96997 * 119.99541 * 179.97438 * 15 14 12 35 35 H 1.08997 * 117.49692 * 215.00475 * 20 11 10 36 36 H 1.09002 * 117.49747 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.50098 * 359.97438 * 21 11 10 38 38 H 1.09002 * 117.49897 * 144.97094 * 21 11 10 39 39 H 1.08999 * 113.61056 * 89.11685 * 22 8 7 40 40 H 1.08995 * 113.61555 * 220.02219 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 6 5.6970 -1.1794 1.2172 8 6 6.8922 -1.2539 0.2525 9 7 7.9368 -0.2595 0.5318 10 6 9.2352 -0.6970 0.0021 11 6 10.3166 0.3052 0.4110 12 6 10.1803 1.6852 -0.1787 13 1 9.6472 2.4532 0.3620 14 6 10.7360 1.9674 -1.4086 15 7 10.6780 3.1893 -1.8917 16 14 11.5716 0.6143 -2.3886 17 1 13.0277 0.6191 -2.0972 18 1 10.9950 -0.7004 -2.0084 19 1 11.3561 0.8485 -3.8390 20 6 10.8820 0.1953 1.8285 21 6 11.7321 -0.2329 0.6297 22 6 5.9197 -0.8297 -0.8606 23 7 2.3030 -1.0841 -0.0063 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 4.6205 -2.4945 -0.1997 28 1 5.6777 -1.9844 1.9517 29 1 5.5574 -0.1951 1.6642 30 1 7.2895 -2.2611 0.1266 31 1 7.6825 0.6450 0.1641 32 1 9.1840 -0.7528 -1.0852 33 1 9.4796 -1.6798 0.4052 34 1 11.0693 3.3878 -2.7567 35 1 11.1553 1.1213 2.3344 36 1 10.4839 -0.5912 2.4696 37 1 11.8929 -1.3010 0.4827 38 1 12.5647 0.4111 0.3466 39 1 5.8402 0.2505 -0.9827 40 1 6.0803 -1.3526 -1.8034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474485362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:35 Heat of formation + Delta-G solvation = 114.161273 kcal Electronic energy + Delta-G solvation = -21194.722923 eV Core-core repulsion = 18014.347737 eV Total energy + Delta-G solvation = -3180.375186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.63154 -39.33608 -37.02129 -36.12206 -33.61233 -32.18282 -32.01526 -29.31040 -26.72214 -25.74474 -25.50771 -24.05112 -23.35503 -21.57110 -21.13676 -19.68720 -18.74705 -18.14583 -17.40241 -16.32054 -16.04521 -15.47588 -14.91911 -14.37416 -13.98043 -13.82505 -13.79535 -13.69290 -13.03134 -12.85992 -12.66596 -12.51167 -12.44845 -12.08119 -11.81794 -11.52565 -11.23540 -11.13933 -11.04170 -10.85444 -10.75848 -10.59001 -10.37658 -9.96048 -9.82835 -9.51472 -8.95153 -8.59752 -8.43225 -7.69425 -6.10267 -4.12774 1.07247 2.10716 2.73437 3.28374 3.38002 3.41938 3.51431 3.92867 4.40761 4.42442 4.45390 4.56062 4.77486 4.94169 4.99980 5.11810 5.20245 5.21327 5.29518 5.41120 5.47655 5.70632 5.74454 5.75837 5.81998 5.87383 5.94196 6.00500 6.17646 6.21402 6.25825 6.42654 6.53287 6.57894 6.83916 7.12349 7.22762 7.73279 7.79303 8.07263 8.10798 8.54093 8.95212 9.53858 11.01444 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025768 B = 0.003845 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.355964 B = 7280.490045 C = 7712.958803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.161 3.839 3 N -0.387 5.387 4 O 0.083 5.917 5 C 0.206 3.794 6 C -0.029 4.029 7 C -0.115 4.115 8 C 0.074 3.926 9 N -0.665 5.665 10 C 0.097 3.903 11 C 0.006 3.994 12 C -0.486 4.486 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.280 1.280 18 H -0.257 1.257 19 H -0.296 1.296 20 C -0.168 4.168 21 C -0.206 4.206 22 C -0.161 4.161 23 N -0.492 5.492 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.358 0.642 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 -11.032 3.139 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 N -0.096 5.096 4 O 0.025 5.975 5 C -0.014 4.014 6 C -0.050 4.050 7 C -0.154 4.154 8 C -0.038 4.038 9 N -0.295 5.295 10 C -0.032 4.032 11 C 0.005 3.995 12 C -0.523 4.523 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.536 5.536 16 Si 0.706 3.294 17 H -0.206 1.206 18 H -0.181 1.181 19 H -0.223 1.223 20 C -0.205 4.205 21 C -0.244 4.244 22 C -0.201 4.201 23 N -0.226 5.226 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.150 0.850 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.179 0.821 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.787 -10.607 3.606 18.552 hybrid contribution 0.484 -0.526 -1.667 1.814 sum -14.303 -11.133 1.939 18.229 Atomic orbital electron populations 1.20105 0.83121 1.04511 1.04150 1.25904 1.00555 0.83778 1.00926 1.74675 0.89451 1.23930 1.21569 1.85305 1.22101 1.24661 1.65415 1.28687 0.96401 0.82168 0.94152 1.21323 0.83933 0.97844 1.01861 1.23236 0.93258 1.03647 0.95265 1.22891 0.90731 0.97498 0.92658 1.60272 1.01300 1.05106 1.62858 1.21708 0.88939 0.96239 0.96319 1.19326 0.89014 0.95652 0.95496 1.20322 1.35651 0.93194 1.03181 0.90373 1.24998 0.95275 0.95023 0.97306 1.69913 1.45476 1.19076 1.19141 0.86869 0.80267 0.83701 0.78547 1.20638 1.18144 1.22314 1.22684 1.05105 1.01182 0.91576 1.22984 0.96948 0.98726 1.05768 1.23954 0.94562 1.02513 0.99112 1.71896 0.99795 1.29437 1.21455 0.89478 0.89176 0.89578 0.84981 0.90212 0.88709 0.88429 0.82067 0.95341 0.93569 0.92680 0.89996 0.90929 0.91309 0.89729 0.88430 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.01 0.38 -0.12 16 2 C 0.16 2.07 8.22 -156.37 -1.28 0.78 16 3 N -0.39 -5.69 12.16 30.90 0.38 -5.31 16 4 O 0.08 1.21 11.05 18.10 0.20 1.41 16 5 C 0.21 2.66 7.52 -13.06 -0.10 2.56 16 6 C -0.03 -0.30 4.29 -90.96 -0.39 -0.69 16 7 C -0.11 -1.26 7.43 -25.92 -0.19 -1.46 16 8 C 0.07 0.94 4.17 -66.90 -0.28 0.66 16 9 N -0.66 -11.18 6.59 -105.86 -0.70 -11.88 16 10 C 0.10 1.85 5.02 -3.82 -0.02 1.83 16 11 C 0.01 0.14 1.01 -155.66 -0.16 -0.02 16 12 C -0.49 -12.88 8.90 -34.44 -0.31 -13.19 16 13 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 16 Si 0.88 21.03 24.97 -169.99 -4.24 16.79 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.26 -5.75 5.64 56.52 0.32 -5.43 16 19 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 20 C -0.17 -3.40 9.96 -26.69 -0.27 -3.66 16 21 C -0.21 -4.31 7.63 -26.69 -0.20 -4.51 16 22 C -0.16 -1.90 7.25 -25.91 -0.19 -2.09 16 23 N -0.49 -6.61 11.55 -9.86 -0.11 -6.72 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.10 1.13 7.82 -51.93 -0.41 0.72 16 31 H 0.36 6.60 7.76 -39.29 -0.31 6.29 16 32 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 33 H 0.05 0.81 7.98 -51.93 -0.41 0.39 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.88 7.34 -51.93 -0.38 1.50 16 39 H 0.10 1.29 7.56 -51.93 -0.39 0.89 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -30.34 330.27 -7.94 -38.28 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.11 Total: 6.25 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -3.10 Total: -17.90 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.34 Total: -49.79 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.20 Total: 1.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.24 Total: 16.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.34 -7.94 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474485362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.440 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds