Wall clock time and date at job start Thu Apr 9 2020 13:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29948 * 126.28802 * 2 1 4 4 O 1.21305 * 110.25023 * 180.02562 * 3 2 1 5 5 C 1.33641 * 109.81227 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.55219 * 179.97438 * 5 4 3 7 7 C 1.53782 * 113.61823 * 60.01836 * 6 5 4 8 8 C 1.53775 * 87.08530 * 220.02514 * 7 6 5 9 9 N 1.46900 * 113.61852 * 139.98187 * 8 7 6 10 10 C 1.46901 * 110.99877 * 156.44121 * 9 8 7 11 11 C 1.53003 * 109.46731 * 184.62599 * 10 9 8 12 12 C 1.50697 * 115.55015 * 294.69124 * 11 10 9 13 13 H 1.08001 * 119.99670 * 92.57159 * 12 11 10 14 14 C 1.37877 * 120.00344 * 272.57728 * 12 11 10 15 15 N 1.31521 * 119.99925 * 183.56323 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 3.55621 * 14 12 11 17 17 H 1.48496 * 109.47003 * 266.19259 * 16 14 12 18 18 H 1.48504 * 109.46651 * 26.19115 * 16 14 12 19 19 H 1.48491 * 109.46948 * 146.18797 * 16 14 12 20 20 C 1.53000 * 117.50080 * 80.36805 * 11 10 9 21 21 C 1.53000 * 117.49743 * 149.02624 * 11 10 9 22 22 C 1.53783 * 87.08442 * 25.42865 * 8 7 6 23 23 N 1.31132 * 106.89775 * 0.22170 * 5 4 3 24 24 H 1.08998 * 109.47032 * 89.97214 * 1 2 3 25 25 H 1.08997 * 109.46934 * 209.97329 * 1 2 3 26 26 H 1.08999 * 109.47186 * 329.97324 * 1 2 3 27 27 H 1.08997 * 112.91022 * 191.26992 * 6 5 4 28 28 H 1.08994 * 113.61462 * 105.46979 * 7 6 5 29 29 H 1.09005 * 113.68835 * 334.58180 * 7 6 5 30 30 H 1.09002 * 113.60998 * 270.79916 * 8 7 6 31 31 H 1.00898 * 111.00092 * 280.39068 * 9 8 7 32 32 H 1.08999 * 109.47455 * 64.62361 * 10 9 8 33 33 H 1.09001 * 109.47428 * 304.62330 * 10 9 8 34 34 H 0.96997 * 119.99541 * 179.97438 * 15 14 12 35 35 H 1.08997 * 117.49692 * 215.00475 * 20 11 10 36 36 H 1.09002 * 117.49747 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.50098 * 359.97438 * 21 11 10 38 38 H 1.09002 * 117.49897 * 144.97094 * 21 11 10 39 39 H 1.08999 * 113.61056 * 89.11685 * 22 8 7 40 40 H 1.08995 * 113.61555 * 220.02219 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 6 5.6970 -1.1794 1.2172 8 6 6.8922 -1.2539 0.2525 9 7 7.9368 -0.2595 0.5318 10 6 9.2352 -0.6970 0.0021 11 6 10.3166 0.3052 0.4110 12 6 10.1803 1.6852 -0.1787 13 1 9.6472 2.4532 0.3620 14 6 10.7360 1.9674 -1.4086 15 7 10.6780 3.1893 -1.8917 16 14 11.5716 0.6143 -2.3886 17 1 13.0277 0.6191 -2.0972 18 1 10.9950 -0.7004 -2.0084 19 1 11.3561 0.8485 -3.8390 20 6 10.8820 0.1953 1.8285 21 6 11.7321 -0.2329 0.6297 22 6 5.9197 -0.8297 -0.8606 23 7 2.3030 -1.0841 -0.0063 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 4.6205 -2.4945 -0.1997 28 1 5.6777 -1.9844 1.9517 29 1 5.5574 -0.1951 1.6642 30 1 7.2895 -2.2611 0.1266 31 1 7.6825 0.6450 0.1641 32 1 9.1840 -0.7528 -1.0852 33 1 9.4796 -1.6798 0.4052 34 1 11.0693 3.3878 -2.7567 35 1 11.1553 1.1213 2.3344 36 1 10.4839 -0.5912 2.4696 37 1 11.8929 -1.3010 0.4827 38 1 12.5647 0.4111 0.3466 39 1 5.8402 0.2505 -0.9827 40 1 6.0803 -1.3526 -1.8034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474485362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:34 Heat of formation + Delta-G solvation = 92.493156 kcal Electronic energy + Delta-G solvation = -21195.662523 eV Core-core repulsion = 18014.347737 eV Total energy + Delta-G solvation = -3181.314786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.64198 -40.35362 -38.64079 -37.10218 -34.79747 -34.15803 -33.23509 -30.10761 -28.22435 -27.16487 -26.65848 -25.35843 -24.38646 -23.16739 -22.18977 -20.98696 -20.22923 -19.18119 -18.42433 -18.13005 -17.11075 -16.78850 -16.58777 -15.54221 -15.35798 -15.06542 -14.78721 -14.70387 -14.50382 -14.17645 -13.87196 -13.52800 -13.44195 -13.26700 -13.20932 -13.00120 -12.73489 -12.38028 -12.23629 -12.14081 -11.98327 -11.84547 -11.69419 -11.65542 -11.26948 -10.81882 -10.79802 -10.56121 -10.16935 -9.01610 -8.23844 -6.29629 0.06265 1.13844 1.38735 1.41520 1.53980 1.78749 2.41686 2.61960 3.04815 3.11727 3.18119 3.50607 3.52533 3.68763 3.88862 4.05471 4.13187 4.26232 4.48359 4.51738 4.54957 4.58783 4.61809 4.67619 4.76208 4.80169 4.85141 4.88467 4.92797 4.96489 5.02548 5.07563 5.10979 5.21985 5.35871 5.49602 5.59721 5.81476 6.37804 6.48464 6.61798 6.82302 7.10180 7.40185 8.91795 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025768 B = 0.003845 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.355964 B = 7280.490045 C = 7712.958803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.162 3.838 3 N -0.417 5.417 4 O 0.058 5.942 5 C 0.206 3.794 6 C -0.014 4.014 7 C -0.107 4.107 8 C 0.071 3.929 9 N -0.674 5.674 10 C 0.105 3.895 11 C -0.017 4.017 12 C -0.478 4.478 13 H 0.029 0.971 14 C 0.018 3.982 15 N -0.953 5.953 16 Si 0.937 3.063 17 H -0.278 1.278 18 H -0.223 1.223 19 H -0.303 1.303 20 C -0.156 4.156 21 C -0.200 4.200 22 C -0.162 4.162 23 N -0.503 5.503 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.162 0.838 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.342 0.658 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 -14.878 3.509 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 N -0.131 5.131 4 O 0.005 5.995 5 C -0.014 4.014 6 C -0.035 4.035 7 C -0.147 4.147 8 C -0.040 4.040 9 N -0.303 5.303 10 C -0.024 4.024 11 C -0.018 4.018 12 C -0.516 4.516 13 H 0.048 0.952 14 C -0.179 4.179 15 N -0.594 5.594 16 Si 0.763 3.237 17 H -0.204 1.204 18 H -0.146 1.146 19 H -0.230 1.230 20 C -0.194 4.194 21 C -0.238 4.238 22 C -0.202 4.202 23 N -0.238 5.238 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.179 0.821 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.376 -14.490 4.008 21.504 hybrid contribution 0.594 0.754 -1.686 1.941 sum -14.782 -13.735 2.321 20.311 Atomic orbital electron populations 1.20360 0.80126 1.05862 1.05574 1.26750 1.02284 0.83141 0.98916 1.74678 0.89710 1.25145 1.23563 1.85274 1.22397 1.25605 1.66233 1.29198 0.97223 0.81803 0.93173 1.21451 0.82424 0.98694 1.00907 1.23152 0.92334 1.03530 0.95648 1.23088 0.89983 0.97390 0.93508 1.60287 1.01819 1.05331 1.62834 1.21560 0.88779 0.96318 0.95716 1.19325 0.91260 0.94189 0.97063 1.20475 1.33766 0.94737 1.02640 0.95225 1.25827 0.96327 0.97109 0.98592 1.70075 1.47806 1.21677 1.19804 0.85912 0.79192 0.82258 0.76379 1.20384 1.14582 1.23034 1.22689 1.04170 1.01386 0.91120 1.23025 0.95209 1.00210 1.05366 1.23873 0.95122 1.01414 0.99818 1.71925 0.99987 1.29724 1.22125 0.87863 0.87506 0.88513 0.82057 0.87887 0.90605 0.86010 0.83887 0.96584 0.90630 0.92899 0.91646 0.87944 0.87950 0.91602 0.90743 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.51 71.24 0.75 -0.13 16 2 C 0.16 3.99 8.22 138.46 1.14 5.13 16 3 N -0.42 -12.37 12.16 -60.29 -0.73 -13.10 16 4 O 0.06 1.72 11.05 74.84 0.83 2.55 16 5 C 0.21 5.13 7.52 88.38 0.66 5.79 16 6 C -0.01 -0.27 4.29 -11.01 -0.05 -0.32 16 7 C -0.11 -2.13 7.43 31.12 0.23 -1.90 16 8 C 0.07 1.62 4.17 45.44 0.19 1.80 16 9 N -0.67 -21.79 6.59 -488.85 -3.22 -25.01 16 10 C 0.11 3.73 5.02 86.30 0.43 4.17 16 11 C -0.02 -0.74 1.01 -52.93 -0.05 -0.79 16 12 C -0.48 -26.12 8.90 25.60 0.23 -25.90 16 13 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 14 C 0.02 1.03 5.47 84.65 0.46 1.49 16 15 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 16 Si 0.94 43.14 24.97 68.60 1.71 44.85 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.22 -8.99 5.64 99.48 0.56 -8.43 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 20 C -0.16 -5.99 9.96 30.62 0.30 -5.69 16 21 C -0.20 -7.78 7.63 30.62 0.23 -7.55 16 22 C -0.16 -3.60 7.25 31.12 0.23 -3.37 16 23 N -0.50 -12.80 11.55 -303.17 -3.50 -16.30 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.16 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.82 8.10 -2.38 -0.02 1.80 16 30 H 0.12 2.24 7.82 -2.39 -0.02 2.23 16 31 H 0.34 12.92 7.76 -89.70 -0.70 12.23 16 32 H 0.02 0.60 6.57 -2.39 -0.02 0.59 16 33 H 0.08 2.26 7.98 -2.39 -0.02 2.24 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 38 H 0.07 2.80 7.34 -2.39 -0.02 2.79 16 39 H 0.07 2.02 7.56 -2.39 -0.02 2.00 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -68.68 330.27 0.34 -68.34 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.20 Total: 24.72 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.76 Total: -27.26 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -7.16 Total: -113.20 kcal Atomic # 8 Polarization: 1.72 SS G_CDS: 0.83 Total: 2.55 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.71 Total: 44.85 kcal Total: -68.68 0.34 -68.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474485362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.831 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds