Wall clock time and date at job start Thu Apr 9 2020 13:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47016 * 2 1 4 4 C 1.38625 * 120.75242 * 89.99917 * 3 2 1 5 5 C 1.38558 * 119.35395 * 179.97438 * 4 3 2 6 6 N 1.31524 * 120.90318 * 359.97438 * 5 4 3 7 7 C 1.32721 * 121.64041 * 0.02562 * 6 5 4 8 8 C 1.48167 * 119.72387 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00337 * 179.97438 * 8 7 6 10 10 N 1.34783 * 120.00073 * 359.97438 * 8 7 6 11 11 C 1.46495 * 120.00024 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47235 * 35.01030 * 11 10 8 13 13 C 1.52997 * 109.47370 * 275.00430 * 11 10 8 14 14 C 1.53004 * 109.46771 * 155.00395 * 11 10 8 15 15 N 1.46501 * 109.47033 * 304.99881 * 14 11 10 16 16 C 1.36939 * 120.00014 * 179.97438 * 15 14 11 17 17 H 1.08003 * 119.99581 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00307 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47587 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47176 * 120.00507 * 20 18 16 23 23 H 1.48509 * 109.47281 * 240.00174 * 20 18 16 24 24 C 1.38590 * 120.75939 * 269.97757 * 3 2 1 25 25 H 1.09003 * 109.47018 * 60.00080 * 1 2 3 26 26 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47329 * 299.99872 * 1 2 3 28 28 H 1.09001 * 109.47329 * 240.00128 * 2 1 3 29 29 H 1.08994 * 109.47268 * 119.99945 * 2 1 3 30 30 H 1.08002 * 120.32666 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.55393 * 180.02562 * 5 4 3 32 32 H 0.96999 * 119.99316 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46835 * 180.02562 * 13 11 10 34 34 H 1.08997 * 109.47263 * 299.99907 * 13 11 10 35 35 H 1.08993 * 109.47319 * 60.00441 * 13 11 10 36 36 H 1.08995 * 109.47017 * 65.00335 * 14 11 10 37 37 H 1.09005 * 109.47278 * 185.00448 * 14 11 10 38 38 H 0.97000 * 120.00511 * 0.02562 * 15 14 11 39 39 H 0.96994 * 120.00319 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.46527 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2685 2.0891 1.1913 5 6 2.7307 3.3949 1.1575 6 7 2.9476 4.0053 0.0128 7 6 2.7342 3.4014 -1.1496 8 6 2.9922 4.1294 -2.4140 9 8 2.7990 3.5813 -3.4811 10 7 3.4413 5.3998 -2.3806 11 6 3.6969 6.1195 -3.6307 12 1 2.9654 5.8171 -4.3802 13 6 5.1050 5.7898 -4.1302 14 6 3.5825 7.6253 -3.3848 15 7 2.2758 7.9257 -2.7945 16 6 1.9452 9.2181 -2.4849 17 1 2.6477 10.0158 -2.6764 18 6 0.7073 9.5028 -1.9251 19 7 -0.1485 8.5305 -1.6914 20 14 0.2567 11.2655 -1.5022 21 1 1.3837 12.1640 -1.8597 22 1 -0.9540 11.6635 -2.2645 23 1 -0.0182 11.3706 -0.0466 24 6 2.2690 2.0889 -1.1909 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0948 1.5966 2.1367 31 1 2.9163 3.9185 2.0837 32 1 3.5959 5.8372 -1.5287 33 1 5.2953 6.3257 -5.0602 34 1 5.8364 6.0922 -3.3809 35 1 5.1865 4.7171 -4.3054 36 1 4.3711 7.9430 -2.7028 37 1 3.6845 8.1567 -4.3310 38 1 1.6450 7.2093 -2.6222 39 1 -1.0134 8.7294 -1.2999 40 1 2.0964 1.5985 -2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483130455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:45 Heat of formation + Delta-G solvation = -3.324834 kcal Electronic energy + Delta-G solvation = -21098.162208 eV Core-core repulsion = 17912.692442 eV Total energy + Delta-G solvation = -3185.469766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58848 -38.94134 -36.11109 -35.17081 -33.57522 -31.76794 -30.95331 -30.43514 -29.71558 -25.68313 -24.96069 -24.22792 -22.64372 -22.22101 -20.69916 -19.91543 -17.67281 -17.02530 -16.73337 -15.98273 -15.61008 -15.06843 -14.94281 -14.63842 -14.11361 -13.87777 -13.72731 -13.62039 -13.43645 -13.18261 -12.58703 -12.33213 -12.18277 -12.11487 -12.00645 -11.71771 -11.55927 -11.23800 -10.87880 -10.81076 -10.42228 -10.03647 -9.98327 -9.70805 -9.65490 -9.39938 -9.20522 -8.88223 -8.61616 -6.91286 -5.73508 -3.03271 0.70703 1.17205 2.95514 3.41582 3.45283 3.50278 3.52740 3.96915 4.25171 4.43816 4.59466 4.62478 4.90783 4.97945 5.06572 5.08519 5.23520 5.32226 5.45580 5.53710 5.58414 5.60109 5.64368 5.70018 5.74213 5.87531 5.97318 6.06178 6.14036 6.18195 6.23647 6.44303 6.52727 6.56572 6.74265 6.98522 7.71028 7.72182 8.03031 8.43894 8.54320 9.55737 10.12413 10.47689 11.48945 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.004506 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.778945 B = 6212.139756 C = 7275.955292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.049 4.049 4 C -0.156 4.156 5 C 0.103 3.897 6 N -0.454 5.454 7 C 0.091 3.909 8 C 0.570 3.430 9 O -0.545 6.545 10 N -0.687 5.687 11 C 0.130 3.870 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.145 3.855 15 N -0.732 5.732 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.114 4.114 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.386 0.614 39 H 0.254 0.746 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 -16.850 5.046 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.057 4.057 4 C -0.176 4.176 5 C -0.057 4.057 6 N -0.166 5.166 7 C -0.048 4.048 8 C 0.354 3.646 9 O -0.422 6.422 10 N -0.337 5.337 11 C 0.026 3.974 12 H 0.106 0.894 13 C -0.216 4.216 14 C 0.017 3.983 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.134 4.134 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.220 0.780 39 H 0.064 0.936 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.167 -16.143 4.244 18.165 hybrid contribution -0.859 0.194 0.870 1.238 sum 6.308 -15.949 5.114 17.897 Atomic orbital electron populations 1.21763 0.94059 1.02068 1.02769 1.20573 0.96684 0.91488 1.03412 1.20310 0.95947 0.96780 0.92703 1.22219 1.00296 0.96355 0.98691 1.22798 0.94919 0.91891 0.96064 1.67607 1.13909 1.37075 0.97968 1.21241 0.98742 0.92337 0.92450 1.17845 0.77366 0.82185 0.87189 1.90740 1.53355 1.68120 1.30014 1.45858 1.64432 1.12534 1.10920 1.21330 0.97006 0.92868 0.86235 0.89387 1.22098 0.96396 1.01796 1.01282 1.20983 0.90076 0.90217 0.97067 1.42368 1.13595 1.06997 1.74688 1.19265 0.98987 0.85050 1.33912 0.91068 1.24749 0.96805 0.97388 1.01905 1.69688 1.08236 1.30299 1.49643 0.86120 0.78000 0.84387 0.77674 1.20542 1.21916 1.21903 1.21982 0.97602 0.94431 0.99434 0.92103 0.92012 0.92333 0.90369 0.90484 0.84552 0.82095 0.74825 0.91522 0.92489 0.92439 0.95705 0.94765 0.77973 0.93607 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.67 6.11 -27.88 -0.17 -0.84 16 3 C -0.05 -0.54 5.17 -104.35 -0.54 -1.08 16 4 C -0.16 -1.60 9.82 -39.32 -0.39 -1.98 16 5 C 0.10 1.26 11.18 -17.57 -0.20 1.06 16 6 N -0.45 -7.16 9.54 -9.80 -0.09 -7.25 16 7 C 0.09 1.49 6.75 -83.01 -0.56 0.93 16 8 C 0.57 10.58 7.78 -12.18 -0.09 10.48 16 9 O -0.54 -11.06 15.99 5.35 0.09 -10.98 16 10 N -0.69 -12.54 4.51 -54.65 -0.25 -12.79 16 11 C 0.13 2.34 2.73 -67.93 -0.19 2.15 16 12 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 13 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 14 C 0.14 2.94 5.82 -4.04 -0.02 2.92 16 15 N -0.73 -18.90 5.43 -59.90 -0.33 -19.22 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 20 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C -0.11 -1.57 9.34 -39.05 -0.36 -1.94 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.41 7.68 7.93 -40.82 -0.32 7.36 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.39 10.74 7.33 -40.82 -0.30 10.44 16 39 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.15 1.94 7.64 -52.49 -0.40 1.54 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -33.36 343.04 -7.79 -41.15 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.03 Total: 12.78 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.05 Total: 1.54 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: 0.06 Total: -67.30 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.36 -7.79 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483130455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.823 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds