Wall clock time and date at job start Thu Apr 9 2020 13:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47016 * 2 1 4 4 C 1.38625 * 120.75242 * 89.99917 * 3 2 1 5 5 C 1.38558 * 119.35395 * 179.97438 * 4 3 2 6 6 N 1.31524 * 120.90318 * 359.97438 * 5 4 3 7 7 C 1.32721 * 121.64041 * 0.02562 * 6 5 4 8 8 C 1.48167 * 119.72387 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00337 * 179.97438 * 8 7 6 10 10 N 1.34783 * 120.00073 * 359.97438 * 8 7 6 11 11 C 1.46495 * 120.00024 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47235 * 35.01030 * 11 10 8 13 13 C 1.52997 * 109.47370 * 275.00430 * 11 10 8 14 14 C 1.53004 * 109.46771 * 155.00395 * 11 10 8 15 15 N 1.46501 * 109.47033 * 304.99881 * 14 11 10 16 16 C 1.36939 * 120.00014 * 179.97438 * 15 14 11 17 17 H 1.08003 * 119.99581 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00307 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47587 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47176 * 120.00507 * 20 18 16 23 23 H 1.48509 * 109.47281 * 240.00174 * 20 18 16 24 24 C 1.38590 * 120.75939 * 269.97757 * 3 2 1 25 25 H 1.09003 * 109.47018 * 60.00080 * 1 2 3 26 26 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47329 * 299.99872 * 1 2 3 28 28 H 1.09001 * 109.47329 * 240.00128 * 2 1 3 29 29 H 1.08994 * 109.47268 * 119.99945 * 2 1 3 30 30 H 1.08002 * 120.32666 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.55393 * 180.02562 * 5 4 3 32 32 H 0.96999 * 119.99316 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46835 * 180.02562 * 13 11 10 34 34 H 1.08997 * 109.47263 * 299.99907 * 13 11 10 35 35 H 1.08993 * 109.47319 * 60.00441 * 13 11 10 36 36 H 1.08995 * 109.47017 * 65.00335 * 14 11 10 37 37 H 1.09005 * 109.47278 * 185.00448 * 14 11 10 38 38 H 0.97000 * 120.00511 * 0.02562 * 15 14 11 39 39 H 0.96994 * 120.00319 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.46527 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2685 2.0891 1.1913 5 6 2.7307 3.3949 1.1575 6 7 2.9476 4.0053 0.0128 7 6 2.7342 3.4014 -1.1496 8 6 2.9922 4.1294 -2.4140 9 8 2.7990 3.5813 -3.4811 10 7 3.4413 5.3998 -2.3806 11 6 3.6969 6.1195 -3.6307 12 1 2.9654 5.8171 -4.3802 13 6 5.1050 5.7898 -4.1302 14 6 3.5825 7.6253 -3.3848 15 7 2.2758 7.9257 -2.7945 16 6 1.9452 9.2181 -2.4849 17 1 2.6477 10.0158 -2.6764 18 6 0.7073 9.5028 -1.9251 19 7 -0.1485 8.5305 -1.6914 20 14 0.2567 11.2655 -1.5022 21 1 1.3837 12.1640 -1.8597 22 1 -0.9540 11.6635 -2.2645 23 1 -0.0182 11.3706 -0.0466 24 6 2.2690 2.0889 -1.1909 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0948 1.5966 2.1367 31 1 2.9163 3.9185 2.0837 32 1 3.5959 5.8372 -1.5287 33 1 5.2953 6.3257 -5.0602 34 1 5.8364 6.0922 -3.3809 35 1 5.1865 4.7171 -4.3054 36 1 4.3711 7.9430 -2.7028 37 1 3.6845 8.1567 -4.3310 38 1 1.6450 7.2093 -2.6222 39 1 -1.0134 8.7294 -1.2999 40 1 2.0964 1.5985 -2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483130455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:44 Heat of formation + Delta-G solvation = -26.299148 kcal Electronic energy + Delta-G solvation = -21099.158449 eV Core-core repulsion = 17912.692442 eV Total energy + Delta-G solvation = -3186.466007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71190 -40.25074 -37.73120 -36.02954 -35.45670 -33.21459 -32.41992 -31.49822 -31.05991 -27.45681 -26.01895 -25.20933 -24.46852 -23.25813 -22.04821 -21.26015 -19.31767 -18.65028 -17.91105 -17.00899 -16.89375 -16.69589 -16.26249 -16.00541 -15.38661 -15.30598 -15.01610 -14.88405 -14.59888 -14.41492 -13.98705 -13.67941 -13.55663 -13.32446 -13.10791 -12.98020 -12.82115 -12.66400 -12.37797 -12.11585 -11.92578 -11.87798 -11.71945 -11.36523 -10.98949 -10.58375 -10.51163 -10.30638 -10.01082 -9.03080 -7.94914 -5.25421 -0.35836 0.22188 1.47187 1.48394 1.58660 1.69253 2.09969 2.55577 2.85420 3.15905 3.39480 3.60489 3.73230 3.81442 4.00493 4.02528 4.04434 4.27170 4.27540 4.44018 4.46860 4.51215 4.61759 4.75844 4.77751 4.83706 4.90448 4.93756 4.99131 5.07048 5.09438 5.27399 5.35152 5.37117 5.48705 5.51902 5.65551 6.25125 6.41434 6.82763 7.12808 7.31852 8.05085 8.29027 9.28764 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.004506 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.778945 B = 6212.139756 C = 7275.955292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.048 4.048 4 C -0.136 4.136 5 C 0.091 3.909 6 N -0.484 5.484 7 C 0.057 3.943 8 C 0.563 3.437 9 O -0.574 6.574 10 N -0.688 5.688 11 C 0.135 3.865 12 H 0.064 0.936 13 C -0.145 4.145 14 C 0.146 3.854 15 N -0.745 5.745 16 C -0.244 4.244 17 H 0.081 0.919 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.293 1.293 24 C -0.122 4.122 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.180 0.820 31 H 0.189 0.811 32 H 0.413 0.587 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.372 0.628 39 H 0.250 0.750 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -17.434 6.622 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.056 4.056 4 C -0.156 4.156 5 C -0.069 4.069 6 N -0.197 5.197 7 C -0.080 4.080 8 C 0.349 3.651 9 O -0.454 6.454 10 N -0.337 5.337 11 C 0.030 3.970 12 H 0.082 0.918 13 C -0.203 4.203 14 C 0.019 3.981 15 N -0.388 5.388 16 C -0.376 4.376 17 H 0.099 0.901 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.223 1.223 23 H -0.220 1.220 24 C -0.143 4.143 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.198 0.802 31 H 0.205 0.795 32 H 0.249 0.751 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.204 0.796 39 H 0.058 0.942 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.108 -16.713 5.794 19.458 hybrid contribution -1.104 0.302 0.426 1.222 sum 7.004 -16.410 6.220 18.896 Atomic orbital electron populations 1.21771 0.94020 1.03063 1.01803 1.20664 0.96500 0.89493 1.05102 1.20717 0.94811 0.98195 0.91830 1.22679 0.97432 0.95343 1.00111 1.23397 0.94553 0.93132 0.95817 1.67517 1.15209 1.38256 0.98684 1.20998 1.01790 0.93340 0.91882 1.18304 0.76595 0.82165 0.87998 1.90697 1.54682 1.68718 1.31286 1.45872 1.64496 1.12617 1.10763 1.21260 0.98621 0.91335 0.85770 0.91787 1.22000 0.94042 1.01800 1.02484 1.21144 0.87849 0.91930 0.97172 1.42569 1.15251 1.05945 1.75063 1.19712 0.99059 0.86233 1.32576 0.90068 1.25610 0.97004 1.01479 1.02694 1.69865 1.08526 1.32525 1.51275 0.85026 0.77761 0.79744 0.76907 1.18684 1.22305 1.22031 1.22081 0.97778 0.93768 1.00684 0.94170 0.90071 0.92222 0.89910 0.87617 0.80248 0.79450 0.75081 0.89489 0.91055 0.92855 0.94335 0.93756 0.79636 0.94171 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.89 71.98 0.71 -1.34 16 2 C -0.08 -1.06 6.11 29.85 0.18 -0.88 16 3 C -0.05 -0.97 5.17 -19.69 -0.10 -1.07 16 4 C -0.14 -2.40 9.82 22.44 0.22 -2.18 16 5 C 0.09 2.09 11.18 84.82 0.95 3.04 16 6 N -0.48 -15.48 9.54 -184.91 -1.76 -17.24 16 7 C 0.06 1.93 6.75 41.91 0.28 2.21 16 8 C 0.56 22.04 7.78 86.88 0.68 22.71 16 9 O -0.57 -24.64 15.99 -3.76 -0.06 -24.70 16 10 N -0.69 -26.09 4.51 -445.10 -2.01 -28.10 16 11 C 0.13 4.92 2.73 44.99 0.12 5.04 16 12 H 0.06 2.64 7.58 -2.38 -0.02 2.62 16 13 C -0.14 -4.07 9.48 71.98 0.68 -3.38 16 14 C 0.15 5.90 5.82 86.38 0.50 6.40 16 15 N -0.75 -39.09 5.43 -343.44 -1.87 -40.96 16 16 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 18 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 19 N -0.97 -61.40 13.06 21.65 0.28 -61.11 16 20 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 C -0.12 -3.44 9.34 22.61 0.21 -3.23 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 29 H 0.11 0.85 8.10 -2.39 -0.02 0.83 16 30 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.41 15.86 7.93 -92.71 -0.74 15.12 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.37 21.43 7.33 -92.71 -0.68 20.75 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.14 3.95 7.64 -2.91 -0.02 3.92 16 Total: -1.00 -74.12 343.04 1.99 -72.13 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.37 Total: 40.79 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.75 Total: 10.35 kcal Atomic # 7 Polarization: -142.05 SS G_CDS: -5.35 Total: -147.41 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -74.12 1.99 -72.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483130455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.830 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds