Wall clock time and date at job start Thu Apr 9 2020 13:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.08995 * 109.47007 * 59.97840 * 16 14 13 18 18 C 1.53111 * 109.46085 * 179.97438 * 16 14 13 19 19 C 1.53363 * 109.51029 * 190.28228 * 18 16 14 20 20 C 1.50824 * 108.38407 * 310.06893 * 19 18 16 21 21 N 1.34329 * 128.03260 * 196.64697 * 20 19 18 22 22 H 0.96994 * 126.08730 * 359.76980 * 21 20 19 23 23 N 1.40298 * 107.81388 * 179.78568 * 21 20 19 24 24 C 1.31066 * 108.27214 * 0.06796 * 23 21 20 25 25 C 1.35756 * 124.12234 * 16.51949 * 20 19 18 26 26 C 1.50836 * 124.10679 * 0.22923 * 25 20 19 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 29 29 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.09003 * 109.46248 * 310.29287 * 18 16 14 35 35 H 1.08991 * 109.46814 * 70.27726 * 18 16 14 36 36 H 1.09002 * 109.69474 * 190.33860 * 19 18 16 37 37 H 1.08995 * 109.69818 * 69.80689 * 19 18 16 38 38 H 1.07999 * 125.96211 * 179.97438 * 24 23 21 39 39 H 1.09007 * 109.68050 * 256.79893 * 26 25 20 40 40 H 1.09002 * 109.71119 * 136.26821 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 1 0.0696 2.6266 -3.4666 18 6 -1.3774 3.9094 -2.5149 19 6 -1.8794 4.3702 -3.8888 20 6 -0.8244 5.2510 -4.5099 21 7 -0.9584 6.1018 -5.5408 22 1 -1.7719 6.2684 -6.0419 23 7 0.2881 6.7059 -5.7636 24 6 1.1393 6.2260 -4.8901 25 6 0.4651 5.3073 -4.0890 26 6 1.0181 4.4928 -2.9463 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 -2.0389 3.1346 -2.1275 35 1 -1.3690 4.7562 -1.8287 36 1 -2.8053 4.9333 -3.7716 37 1 -2.0553 3.5032 -4.5254 38 1 2.1817 6.4956 -4.8062 39 1 1.1234 5.1232 -2.0633 40 1 1.9897 4.0834 -3.2230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273921898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:44 Heat of formation + Delta-G solvation = 13.187758 kcal Electronic energy + Delta-G solvation = -21758.991905 eV Core-core repulsion = 18574.238179 eV Total energy + Delta-G solvation = -3184.753726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59719 -39.24577 -36.18810 -34.84118 -32.80287 -32.23376 -30.97280 -29.55062 -29.31446 -26.86615 -23.96257 -23.23940 -22.40412 -21.85199 -20.05169 -19.27250 -18.73154 -17.64137 -16.93660 -15.68128 -15.41370 -15.04714 -14.77834 -14.44852 -14.20448 -13.82589 -13.54846 -13.12282 -13.04895 -12.88646 -12.65568 -12.11644 -11.81510 -11.52764 -11.41273 -11.20556 -10.99198 -10.84847 -10.81430 -10.76158 -10.50803 -10.29177 -10.13004 -9.60538 -9.59990 -9.02940 -8.85409 -8.46917 -8.35557 -7.77059 -6.10404 -4.19537 1.76381 2.71174 2.73076 3.25834 3.32794 3.34271 3.45536 4.09914 4.38359 4.51630 4.71100 4.77347 4.94623 5.13038 5.21059 5.32565 5.38620 5.44587 5.55847 5.65256 5.78853 5.94140 6.03364 6.20254 6.29159 6.38220 6.40987 6.47512 6.59368 6.68099 7.05958 7.16311 7.22073 7.39637 7.50495 7.56270 7.64700 7.76611 7.93308 8.20973 8.72586 8.81013 9.19715 9.48297 10.94881 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.004402 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.526321 B = 6359.287585 C = 7331.716600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.550 6.550 16 C -0.109 4.109 17 H 0.091 0.909 18 C -0.092 4.092 19 C -0.058 4.058 20 C 0.088 3.912 21 N -0.474 5.474 22 H 0.435 0.565 23 N -0.304 5.304 24 C 0.060 3.940 25 C -0.232 4.232 26 C -0.031 4.031 27 H 0.021 0.979 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.184 0.816 39 H 0.076 0.924 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.849 7.026 -13.157 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.291 3.709 15 O -0.429 6.429 16 C -0.130 4.130 17 H 0.109 0.891 18 C -0.130 4.130 19 C -0.097 4.097 20 C -0.042 4.042 21 N -0.181 5.181 22 H 0.279 0.721 23 N -0.126 5.126 24 C -0.125 4.125 25 C -0.243 4.243 26 C -0.070 4.070 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.200 0.800 39 H 0.095 0.905 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.493 7.691 -13.255 17.521 hybrid contribution 1.083 -0.466 0.076 1.181 sum -7.411 7.225 -13.179 16.757 Atomic orbital electron populations 1.21833 0.98406 0.97929 1.01205 1.21929 0.92577 0.99936 1.02207 1.18763 0.94113 0.89138 0.81203 0.93359 1.21248 0.90812 1.38867 1.06215 0.92096 1.24879 0.98501 0.94841 0.95434 1.69895 1.35084 1.37685 1.09357 0.86480 0.85009 0.77616 0.78181 1.20591 1.21139 1.19856 1.46499 1.14844 1.55686 1.18427 1.20243 0.82748 0.79160 0.88798 1.90660 1.51422 1.60324 1.40491 1.21413 0.96382 0.97845 0.97381 0.89094 1.21328 0.95271 1.01912 0.94515 1.20441 0.94973 0.97220 0.97036 1.21052 0.97199 0.94782 0.91129 1.46011 1.11061 1.33703 1.27343 0.72144 1.77466 0.89620 1.21250 1.24302 1.23628 0.99827 0.95754 0.93328 1.19932 0.93158 1.06581 1.04623 1.19941 0.97538 0.94365 0.95111 0.95978 0.93180 0.94277 0.95107 0.88374 0.92620 0.78001 0.89744 0.90824 0.90057 0.89670 0.79953 0.90546 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.52 37.16 0.32 -2.66 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.38 7.57 -51.93 -0.39 0.99 16 5 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.71 -13.91 4.92 -54.93 -0.27 -14.18 16 14 C 0.51 9.30 5.71 -10.99 -0.06 9.23 16 15 O -0.55 -12.06 12.96 5.55 0.07 -11.99 16 16 C -0.11 -1.46 2.50 -91.53 -0.23 -1.69 16 17 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 18 C -0.09 -1.11 4.64 -26.49 -0.12 -1.23 16 19 C -0.06 -0.52 6.30 -27.63 -0.17 -0.70 16 20 C 0.09 0.96 7.08 -82.33 -0.58 0.38 16 21 N -0.47 -4.88 7.34 33.48 0.25 -4.63 16 22 H 0.44 3.05 8.96 -182.45 -1.64 1.41 16 23 N -0.30 -3.81 12.71 30.54 0.39 -3.42 16 24 C 0.06 0.71 12.00 -17.48 -0.21 0.50 16 25 C -0.23 -2.80 5.91 -105.05 -0.62 -3.42 16 26 C -0.03 -0.39 5.41 -27.63 -0.15 -0.54 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 29 H 0.04 0.82 5.66 -51.93 -0.29 0.52 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.68 8.20 -40.82 -0.33 6.34 16 34 H 0.08 1.08 7.75 -51.93 -0.40 0.67 16 35 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 40 H 0.08 0.92 7.89 -51.93 -0.41 0.51 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -31.04 320.72 -8.76 -39.80 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.11 Total: 7.36 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.53 Total: -9.28 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.99 Total: -46.07 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.04 -8.76 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.985 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds