Wall clock time and date at job start Thu Apr 9 2020 13:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.08995 * 109.47007 * 59.97840 * 16 14 13 18 18 C 1.53111 * 109.46085 * 179.97438 * 16 14 13 19 19 C 1.53363 * 109.51029 * 190.28228 * 18 16 14 20 20 C 1.50824 * 108.38407 * 310.06893 * 19 18 16 21 21 N 1.34329 * 128.03260 * 196.64697 * 20 19 18 22 22 H 0.96994 * 126.08730 * 359.76980 * 21 20 19 23 23 N 1.40298 * 107.81388 * 179.78568 * 21 20 19 24 24 C 1.31066 * 108.27214 * 0.06796 * 23 21 20 25 25 C 1.35756 * 124.12234 * 16.51949 * 20 19 18 26 26 C 1.50836 * 124.10679 * 0.22923 * 25 20 19 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 29 29 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.09003 * 109.46248 * 310.29287 * 18 16 14 35 35 H 1.08991 * 109.46814 * 70.27726 * 18 16 14 36 36 H 1.09002 * 109.69474 * 190.33860 * 19 18 16 37 37 H 1.08995 * 109.69818 * 69.80689 * 19 18 16 38 38 H 1.07999 * 125.96211 * 179.97438 * 24 23 21 39 39 H 1.09007 * 109.68050 * 256.79893 * 26 25 20 40 40 H 1.09002 * 109.71119 * 136.26821 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 1 0.0696 2.6266 -3.4666 18 6 -1.3774 3.9094 -2.5149 19 6 -1.8794 4.3702 -3.8888 20 6 -0.8244 5.2510 -4.5099 21 7 -0.9584 6.1018 -5.5408 22 1 -1.7719 6.2684 -6.0419 23 7 0.2881 6.7059 -5.7636 24 6 1.1393 6.2260 -4.8901 25 6 0.4651 5.3073 -4.0890 26 6 1.0181 4.4928 -2.9463 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 -2.0389 3.1346 -2.1275 35 1 -1.3690 4.7562 -1.8287 36 1 -2.8053 4.9333 -3.7716 37 1 -2.0553 3.5032 -4.5254 38 1 2.1817 6.4956 -4.8062 39 1 1.1234 5.1232 -2.0633 40 1 1.9897 4.0834 -3.2230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273921898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:44 Heat of formation + Delta-G solvation = -7.397811 kcal Electronic energy + Delta-G solvation = -21759.884562 eV Core-core repulsion = 18574.238179 eV Total energy + Delta-G solvation = -3185.646384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.47523 -40.73669 -37.47022 -36.48539 -34.28059 -33.55671 -32.67490 -30.47576 -30.42770 -28.72480 -25.28771 -24.68685 -23.62701 -22.78343 -21.66668 -20.91011 -19.70308 -18.91292 -18.24414 -17.29841 -17.11891 -16.36562 -16.02813 -15.86724 -15.23790 -15.05795 -14.73054 -14.51074 -14.45623 -14.05992 -13.78052 -13.57942 -13.34619 -13.15014 -12.88439 -12.75663 -12.65874 -12.58318 -12.11709 -12.02522 -11.79420 -11.68112 -11.52473 -11.47882 -10.99522 -10.54166 -10.43500 -10.35907 -9.52296 -9.23905 -8.11929 -6.28542 0.92697 1.47198 1.47751 1.57916 1.82393 1.93542 2.02045 2.40529 2.74757 3.17789 3.66189 3.74897 3.91366 3.95571 4.19967 4.24732 4.47159 4.54585 4.58756 4.62387 4.63237 4.73269 4.81925 4.92238 4.99699 5.01885 5.13487 5.23504 5.31879 5.36269 5.40476 5.50247 5.62074 5.71018 5.72226 5.86366 6.00427 6.23423 6.44801 6.73332 6.80813 7.10867 7.39209 7.70529 8.93215 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.004402 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.526321 B = 6359.287585 C = 7331.716600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.503 3.497 15 O -0.588 6.588 16 C -0.095 4.095 17 H 0.114 0.886 18 C -0.090 4.090 19 C -0.047 4.047 20 C 0.095 3.905 21 N -0.464 5.464 22 H 0.449 0.551 23 N -0.330 5.330 24 C 0.055 3.945 25 C -0.254 4.254 26 C -0.023 4.023 27 H 0.043 0.957 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.200 0.800 39 H 0.058 0.942 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 7.239 -15.495 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.353 5.353 14 C 0.290 3.710 15 O -0.469 6.469 16 C -0.117 4.117 17 H 0.132 0.868 18 C -0.129 4.129 19 C -0.086 4.086 20 C -0.036 4.036 21 N -0.173 5.173 22 H 0.296 0.704 23 N -0.153 5.153 24 C -0.130 4.130 25 C -0.265 4.265 26 C -0.062 4.062 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.217 0.783 39 H 0.076 0.924 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.534 7.929 -15.651 19.510 hybrid contribution 1.029 -0.502 0.829 1.413 sum -7.505 7.427 -14.822 18.199 Atomic orbital electron populations 1.21669 0.96879 0.99048 1.00370 1.21780 0.93867 0.99282 1.01142 1.18327 0.93440 0.89141 0.81699 0.98510 1.21612 0.91652 1.38567 1.06535 0.91038 1.25734 1.03027 0.94507 0.95143 1.70051 1.36937 1.38548 1.09891 0.85428 0.79525 0.77301 0.78576 1.20549 1.21169 1.18428 1.46277 1.15912 1.55819 1.17325 1.21122 0.81570 0.78180 0.90093 1.90647 1.52380 1.61469 1.42416 1.21378 0.97429 0.98179 0.94688 0.86799 1.21289 0.94252 1.01043 0.96299 1.20442 0.95091 0.98014 0.95034 1.21289 0.97148 0.94394 0.90759 1.46016 1.11154 1.32982 1.27144 0.70447 1.77431 0.90526 1.22205 1.25091 1.23962 1.00724 0.95412 0.92912 1.19933 0.94010 1.07527 1.05017 1.19815 0.97773 0.93790 0.94830 0.93766 0.95666 0.93376 0.94120 0.91278 0.92746 0.76326 0.90401 0.92473 0.87542 0.87364 0.78281 0.92367 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.52 71.98 0.61 -4.76 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 13.91 2.24 44.25 0.10 14.01 16 4 H 0.00 -0.18 7.57 -2.39 -0.02 -0.20 16 5 C -0.55 -28.36 8.73 25.60 0.22 -28.13 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -52.10 11.29 21.45 0.24 -51.86 16 9 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 13 N -0.70 -27.66 4.92 -446.09 -2.20 -29.85 16 14 C 0.50 18.42 5.71 87.66 0.50 18.93 16 15 O -0.59 -26.36 12.96 -3.04 -0.04 -26.40 16 16 C -0.10 -2.41 2.50 -11.38 -0.03 -2.44 16 17 H 0.11 2.42 8.11 -2.39 -0.02 2.41 16 18 C -0.09 -2.03 4.64 30.75 0.14 -1.88 16 19 C -0.05 -0.69 6.30 30.01 0.19 -0.50 16 20 C 0.10 1.80 7.08 41.64 0.29 2.09 16 21 N -0.46 -8.30 7.34 -47.98 -0.35 -8.65 16 22 H 0.45 4.97 8.96 -213.20 -1.91 3.05 16 23 N -0.33 -7.62 12.71 -57.28 -0.73 -8.35 16 24 C 0.05 1.19 12.00 85.06 1.02 2.21 16 25 C -0.25 -5.63 5.91 -20.14 -0.12 -5.75 16 26 C -0.02 -0.56 5.41 30.01 0.16 -0.39 16 27 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 29 H 0.05 1.99 5.66 -2.39 -0.01 1.98 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 3.78 5.95 -2.39 -0.01 3.77 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.40 13.40 8.20 -92.71 -0.76 12.64 16 34 H 0.08 1.88 7.75 -2.39 -0.02 1.86 16 35 H 0.06 1.47 8.11 -2.39 -0.02 1.45 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.20 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.06 1.58 8.12 -2.38 -0.02 1.56 16 40 H 0.09 1.89 7.89 -2.39 -0.02 1.87 16 Total: -1.00 -68.60 320.72 1.06 -67.54 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -1.60 Total: 24.85 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 3.71 Total: -11.05 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -3.03 Total: -98.71 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.04 Total: -26.40 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.60 1.06 -67.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.143 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds