Wall clock time and date at job start Thu Apr 9 2020 13:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99766 * 2 1 4 4 N 1.46498 * 109.47012 * 125.13976 * 3 2 1 5 5 C 1.46504 * 120.00140 * 275.35308 * 4 3 2 6 6 C 1.50696 * 109.47280 * 270.00547 * 5 4 3 7 7 H 1.08007 * 120.00056 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00142 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00054 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46982 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47281 * 119.99414 * 10 8 6 13 13 H 1.48496 * 109.46941 * 239.99850 * 10 8 6 14 14 C 1.34770 * 120.00334 * 95.35293 * 4 3 2 15 15 O 1.21603 * 120.00249 * 184.38829 * 14 4 3 16 16 C 1.47433 * 119.99842 * 4.39068 * 14 4 3 17 17 C 1.41294 * 126.41416 * 327.17079 * 16 14 4 18 18 N 1.30449 * 108.01979 * 179.76216 * 17 16 14 19 19 N 1.39932 * 108.89839 * 0.40027 * 18 17 16 20 20 C 1.46500 * 125.75536 * 179.84508 * 19 18 17 21 21 C 1.53005 * 109.47334 * 304.70390 * 20 19 18 22 22 C 1.52996 * 109.47041 * 179.97438 * 21 20 19 23 23 C 1.34251 * 108.49318 * 359.59164 * 19 18 17 24 24 H 1.08006 * 119.99733 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00254 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99941 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47242 * 5.13797 * 3 2 1 28 28 H 1.09001 * 109.47254 * 245.13996 * 3 2 1 29 29 H 1.09009 * 109.46722 * 30.00013 * 5 4 3 30 30 H 1.08995 * 109.47524 * 149.99523 * 5 4 3 31 31 H 0.97006 * 119.99885 * 180.02562 * 9 8 6 32 32 H 1.07997 * 125.98567 * 0.02562 * 17 16 14 33 33 H 1.08995 * 109.47656 * 184.70174 * 20 19 18 34 34 H 1.09008 * 109.46875 * 64.69624 * 20 19 18 35 35 H 1.09003 * 109.47214 * 59.99222 * 21 20 19 36 36 H 1.09008 * 109.46514 * 299.99455 * 21 20 19 37 37 H 1.08998 * 109.47307 * 299.99389 * 22 21 20 38 38 H 1.09003 * 109.47490 * 59.99712 * 22 21 20 39 39 H 1.09005 * 109.46557 * 179.97438 * 22 21 20 40 40 H 1.08005 * 126.29854 * 180.21667 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9961 1.3305 1.1295 5 6 2.5317 1.7517 2.4536 6 6 2.7103 3.2410 2.5983 7 1 3.1283 3.8164 1.7854 8 6 2.3410 3.8691 3.7688 9 7 1.8324 3.1686 4.7588 10 14 2.5629 5.7152 3.9485 11 1 3.1514 6.2667 2.7015 12 1 1.2439 6.3506 4.1969 13 1 3.4705 5.9959 5.0898 14 6 4.2813 0.9665 0.9506 15 8 5.0357 0.9108 1.9027 16 6 4.7727 0.6358 -0.3996 17 6 4.0291 0.0319 -1.4382 18 7 4.8105 -0.0906 -2.4755 19 7 6.0754 0.4132 -2.1520 20 6 7.2349 0.4540 -3.0465 21 6 7.5225 -0.9535 -3.5732 22 6 8.7331 -0.9107 -4.5078 23 6 6.0455 0.8579 -0.8857 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0920 28 1 2.6193 1.4038 -0.9324 29 1 1.4771 1.4996 2.5659 30 1 3.1114 1.2399 3.2218 31 1 1.5723 3.6106 5.5822 32 1 2.9938 -0.2710 -1.3842 33 1 8.1030 0.8216 -2.4995 34 1 7.0246 1.1193 -3.8839 35 1 6.6544 -1.3212 -4.1202 36 1 7.7329 -1.6188 -2.7358 37 1 8.5224 -0.2455 -5.3451 38 1 9.6015 -0.5428 -3.9611 39 1 8.9382 -1.9135 -4.8827 40 1 6.8665 1.3067 -0.3461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292191078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:03 Heat of formation + Delta-G solvation = 65.704903 kcal Electronic energy + Delta-G solvation = -21271.725261 eV Core-core repulsion = 18089.248849 eV Total energy + Delta-G solvation = -3182.476412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25030 -38.55799 -35.70186 -35.46818 -33.16310 -32.03907 -31.68031 -30.08821 -27.80772 -26.35169 -25.49716 -23.32484 -22.45525 -21.23678 -20.67823 -19.86924 -18.58170 -17.10539 -16.44035 -16.08857 -15.53825 -15.33887 -14.93356 -14.75133 -14.30601 -14.03214 -13.86332 -13.35655 -13.07103 -12.74006 -12.60544 -12.30232 -12.14629 -12.08775 -11.70143 -11.42664 -11.24921 -11.20654 -11.02339 -10.82377 -10.72040 -10.55454 -10.13591 -9.60003 -9.43941 -9.10509 -8.93519 -8.41157 -8.36025 -7.58003 -5.99531 -4.03964 1.81247 2.40198 2.48592 2.53274 3.32339 3.39647 3.43781 3.85518 4.21358 4.32667 4.49772 4.52711 4.75577 4.88437 4.98538 5.05728 5.16554 5.23968 5.29903 5.34246 5.43689 5.51443 5.59743 5.63163 5.75457 5.76617 5.90487 5.95468 6.08227 6.29904 6.57203 6.84416 6.94492 6.97849 7.19885 7.53714 7.63805 7.69130 7.98135 8.29676 8.52079 8.96505 9.20345 9.61074 11.08484 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.004353 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.000076 B = 6431.322142 C = 7320.797752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 C 0.127 3.873 4 N -0.586 5.586 5 C 0.248 3.752 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.583 3.417 15 O -0.547 6.547 16 C -0.274 4.274 17 C 0.067 3.933 18 N -0.303 5.303 19 N -0.367 5.367 20 C 0.132 3.868 21 C -0.136 4.136 22 C -0.150 4.150 23 C 0.110 3.890 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.197 0.803 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.907 -7.000 -17.745 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C 0.003 3.997 4 N -0.316 5.316 5 C 0.129 3.871 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.369 3.631 15 O -0.426 6.426 16 C -0.289 4.289 17 C -0.120 4.120 18 N -0.124 5.124 19 N -0.148 5.148 20 C 0.011 3.989 21 C -0.175 4.175 22 C -0.208 4.208 23 C -0.039 4.039 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.213 0.787 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.443 -7.378 -18.334 21.118 hybrid contribution -0.068 1.315 1.080 1.703 sum 7.376 -6.063 -17.254 19.719 Atomic orbital electron populations 1.23837 0.95793 1.01812 0.99907 1.23454 0.96464 0.99127 1.00468 1.20849 0.93117 0.95096 0.90673 1.48001 1.07811 1.64034 1.11779 1.19275 0.95222 0.94965 0.77676 1.21501 1.41633 0.92786 1.00448 0.92389 1.24929 0.95178 0.98450 0.95559 1.69950 1.42763 1.35594 1.05035 0.86463 0.77682 0.85269 0.78124 1.19832 1.21008 1.20919 1.17229 0.82327 0.77224 0.86279 1.90735 1.55665 1.54126 1.42042 1.20600 0.94693 1.15567 0.98010 1.24593 1.00069 0.97523 0.89801 1.77059 0.89548 1.21817 1.23935 1.48480 1.09753 1.46479 1.10040 1.21841 0.84453 0.99181 0.93418 1.21806 0.99687 0.95700 1.00267 1.21711 0.97296 1.02450 0.99318 1.22892 0.98570 0.97021 0.85450 0.88705 0.88215 0.87470 0.89781 0.89736 0.94886 0.93714 0.92833 0.78701 0.88512 0.89628 0.90315 0.91294 0.92309 0.92393 0.91995 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.01 0.42 -1.91 16 2 C -0.18 -2.59 8.24 -36.03 -0.30 -2.88 16 3 C 0.13 2.18 5.37 -5.20 -0.03 2.15 16 4 N -0.59 -12.92 2.44 -177.70 -0.43 -13.35 16 5 C 0.25 6.61 5.21 -5.19 -0.03 6.58 16 6 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 7 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.58 12.91 7.60 -12.52 -0.10 12.82 16 15 O -0.55 -14.32 16.59 5.27 0.09 -14.24 16 16 C -0.27 -4.81 5.52 -105.06 -0.58 -5.39 16 17 C 0.07 1.01 9.55 -16.98 -0.16 0.85 16 18 N -0.30 -4.43 12.34 30.86 0.38 -4.05 16 19 N -0.37 -4.74 3.65 -60.80 -0.22 -4.96 16 20 C 0.13 1.13 6.49 -4.04 -0.03 1.10 16 21 C -0.14 -1.07 6.11 -26.73 -0.16 -1.24 16 22 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 23 C 0.11 1.63 11.38 -16.56 -0.19 1.44 16 24 H 0.09 1.08 8.06 -52.48 -0.42 0.65 16 25 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 26 H 0.11 1.49 7.35 -52.49 -0.39 1.11 16 27 H 0.08 1.48 7.76 -51.93 -0.40 1.08 16 28 H 0.08 1.31 4.74 -51.93 -0.25 1.06 16 29 H 0.03 0.89 8.07 -51.92 -0.42 0.47 16 30 H 0.04 1.35 7.36 -51.93 -0.38 0.97 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.20 2.62 4.26 -52.49 -0.22 2.39 16 33 H 0.10 0.61 8.06 -51.93 -0.42 0.19 16 34 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.18 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -34.64 340.27 -6.37 -41.01 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.82 Total: 0.25 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.20 Total: -0.68 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.46 Total: -48.44 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.64 -6.37 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292191078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.714 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds