Wall clock time and date at job start Thu Apr 9 2020 13:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00164 * 2 1 4 4 N 1.46900 * 109.47098 * 125.14689 * 3 2 1 5 5 C 1.46895 * 110.99940 * 199.64161 * 4 3 2 6 6 C 1.50702 * 109.46942 * 66.04876 * 5 4 3 7 7 H 1.08002 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00126 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99920 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46929 * 60.00230 * 10 8 6 12 12 H 1.48506 * 109.46995 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47464 * 300.00030 * 10 8 6 14 14 C 1.46900 * 110.99857 * 75.69148 * 4 3 2 15 15 C 1.53010 * 109.46868 * 199.68763 * 14 4 3 16 16 C 1.52997 * 109.46994 * 174.85009 * 15 14 4 17 17 C 1.50702 * 109.46880 * 179.97438 * 16 15 14 18 18 C 1.38272 * 119.98887 * 270.25500 * 17 16 15 19 19 C 1.38216 * 120.04926 * 180.25638 * 18 17 16 20 20 C 1.38223 * 120.02740 * 359.49223 * 19 18 17 21 21 C 1.38431 * 119.97301 * 0.25585 * 20 19 18 22 22 F 1.35104 * 120.02810 * 179.97438 * 21 20 19 23 23 C 1.38172 * 119.98543 * 90.00673 * 17 16 15 24 24 H 1.08008 * 119.99633 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00440 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99842 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.46830 * 5.14540 * 3 2 1 28 28 H 1.09003 * 109.46919 * 245.14535 * 3 2 1 29 29 H 1.09001 * 109.47163 * 186.04228 * 5 4 3 30 30 H 1.09001 * 109.47647 * 306.04715 * 5 4 3 31 31 H 0.97005 * 120.00238 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47335 * 79.69183 * 14 4 3 33 33 H 1.08995 * 109.47312 * 319.68362 * 14 4 3 34 34 H 1.08993 * 109.46925 * 54.85455 * 15 14 4 35 35 H 1.09001 * 109.47203 * 294.85138 * 15 14 4 36 36 H 1.09006 * 109.47145 * 60.00390 * 16 15 14 37 37 H 1.08990 * 109.47749 * 300.00587 * 16 15 14 38 38 H 1.07994 * 119.97340 * 0.02562 * 18 17 16 39 39 H 1.08001 * 119.98928 * 179.76764 * 19 18 17 40 40 H 1.08004 * 120.01376 * 180.23338 * 20 19 18 41 41 H 1.08006 * 120.01055 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3305 1.1325 5 6 3.4018 2.7066 1.4516 6 6 2.2077 3.4756 1.9555 7 1 1.2456 2.9907 2.0307 8 6 2.3435 4.7982 2.3206 9 7 3.5149 5.3888 2.2286 10 14 0.8633 5.7516 2.9445 11 1 0.3306 5.0953 4.1655 12 1 1.2706 7.1427 3.2673 13 1 -0.1883 5.7749 1.8963 14 6 4.1715 0.4870 0.8657 15 6 4.8600 0.1381 2.1868 16 6 6.0036 -0.8432 1.9224 17 6 6.6820 -1.1864 3.2236 18 6 7.7432 -0.4219 3.6723 19 6 8.3698 -0.7387 4.8629 20 6 7.9294 -1.8139 5.6115 21 6 6.8637 -2.5768 5.1659 22 9 6.4327 -3.6283 5.8965 23 6 6.2401 -2.2617 3.9702 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3588 2.1315 0.0922 28 1 2.6192 1.4038 -0.9325 29 1 4.1741 2.6899 2.2207 30 1 3.7922 3.1881 0.5551 31 1 3.6105 6.3193 2.4857 32 1 4.8685 1.0262 0.2241 33 1 3.8543 -0.4295 0.3682 34 1 4.1379 -0.3193 2.8630 35 1 5.2578 1.0461 2.6401 36 1 6.7258 -0.3858 1.2461 37 1 5.6059 -1.7511 1.4690 38 1 8.0851 0.4211 3.0902 39 1 9.2010 -0.1432 5.2106 40 1 8.4167 -2.0589 6.5437 41 1 5.4088 -2.8565 3.6212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292298336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:09 Heat of formation + Delta-G solvation = -27.830030 kcal Electronic energy + Delta-G solvation = -20579.591346 eV Core-core repulsion = 17373.138994 eV Total energy + Delta-G solvation = -3206.452353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.89062 -40.18598 -38.88795 -35.53259 -34.96295 -33.72255 -31.61022 -31.11499 -29.09276 -27.25004 -25.64026 -23.78859 -23.60431 -22.12106 -21.60641 -20.42072 -18.56958 -18.19366 -17.36809 -17.08034 -16.84739 -16.59857 -16.39101 -15.90534 -15.84411 -15.13995 -14.80074 -14.66497 -14.23179 -14.15092 -13.98549 -13.77933 -13.34198 -13.08415 -12.93140 -12.66972 -12.65809 -12.61686 -12.37105 -12.25110 -11.97617 -11.76953 -11.67381 -11.34213 -11.18335 -10.58762 -10.21370 -9.88166 -9.60097 -8.95089 -8.19502 -6.28568 0.20468 0.27848 1.40231 1.42951 1.49415 1.51110 2.40549 2.63013 3.13051 3.25866 3.43386 3.74924 3.86539 4.07480 4.12181 4.15578 4.29296 4.38978 4.41628 4.45917 4.51971 4.62064 4.66674 4.77533 4.91063 4.94887 5.04211 5.04429 5.12106 5.16317 5.21384 5.29526 5.31234 5.39986 5.45033 5.63179 5.67516 5.78601 5.97716 6.03754 6.09715 6.39121 6.69622 6.87588 7.40717 8.91202 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.004002 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.996353 B = 6994.089797 C = 8022.033873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 C 0.083 3.917 4 N -0.541 5.541 5 C 0.210 3.790 6 C -0.523 4.523 7 H 0.059 0.941 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.056 3.944 15 C -0.096 4.096 16 C -0.071 4.071 17 C -0.055 4.055 18 C -0.137 4.137 19 C -0.089 4.089 20 C -0.165 4.165 21 C 0.077 3.923 22 F -0.150 7.150 23 C -0.160 4.160 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.010 0.990 30 H -0.041 1.041 31 H 0.264 0.736 32 H 0.020 0.980 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -15.285 0.537 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.161 4.161 3 C -0.044 4.044 4 N -0.265 5.265 5 C 0.083 3.917 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.193 1.193 14 C -0.072 4.072 15 C -0.134 4.134 16 C -0.109 4.109 17 C -0.056 4.056 18 C -0.155 4.155 19 C -0.107 4.107 20 C -0.183 4.183 21 C 0.058 3.942 22 F -0.129 7.129 23 C -0.179 4.179 24 H 0.104 0.896 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.028 0.972 30 H -0.023 1.023 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.156 0.844 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.829 -15.340 0.996 16.821 hybrid contribution -0.216 1.094 -0.116 1.121 sum 6.613 -14.246 0.880 15.731 Atomic orbital electron populations 1.23917 0.95673 1.02226 1.00920 1.22884 0.96195 0.97460 0.99521 1.21142 0.95468 0.96610 0.91213 1.62057 1.14809 1.11703 1.37943 1.19380 0.95282 0.83927 0.93074 1.21442 0.96150 0.95716 1.42849 0.92277 1.25839 0.98852 0.98681 0.95967 1.70066 1.25036 1.12689 1.49534 0.85532 0.79308 0.77328 0.79053 1.19561 1.20747 1.19255 1.22171 0.91225 0.97194 0.96638 1.21386 0.96584 0.98186 0.97209 1.20578 0.96783 1.00066 0.93424 1.19893 0.95198 0.93717 0.96747 1.21460 0.96377 1.00085 0.97576 1.21328 0.99848 0.95848 0.93631 1.21397 0.97336 0.97056 1.02521 1.17951 0.97171 0.87309 0.91784 1.91465 1.89364 1.55249 1.76801 1.21194 1.02033 1.00080 0.94597 0.89598 0.86225 0.86166 0.92044 0.95138 0.97180 1.02340 0.92729 0.96169 0.89348 0.92246 0.94288 0.89768 0.88971 0.84446 0.82446 0.83065 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.28 14.32 67.79 0.97 -4.31 16 2 C -0.14 -4.36 9.33 25.65 0.24 -4.12 16 3 C 0.08 3.22 5.24 85.56 0.45 3.67 16 4 N -0.54 -23.14 4.35 -905.36 -3.93 -27.08 16 5 C 0.21 11.16 4.55 85.56 0.39 11.55 16 6 C -0.52 -29.87 8.23 25.60 0.21 -29.65 16 7 H 0.06 3.34 7.31 -2.91 -0.02 3.32 16 8 C 0.00 0.27 5.46 84.66 0.46 0.73 16 9 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 10 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.06 1.88 4.81 86.31 0.41 2.30 16 15 C -0.10 -3.01 5.23 30.60 0.16 -2.85 16 16 C -0.07 -1.63 5.34 29.85 0.16 -1.47 16 17 C -0.06 -1.31 5.13 -19.87 -0.10 -1.41 16 18 C -0.14 -3.04 9.70 22.27 0.22 -2.82 16 19 C -0.09 -1.72 10.04 22.26 0.22 -1.49 16 20 C -0.16 -3.37 10.03 22.31 0.22 -3.15 16 21 C 0.08 1.85 7.30 22.37 0.16 2.01 16 22 F -0.15 -3.79 17.27 44.97 0.78 -3.02 16 23 C -0.16 -3.83 9.68 22.31 0.22 -3.61 16 24 H 0.09 2.55 7.84 -2.91 -0.02 2.53 16 25 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.12 3.15 7.28 -2.91 -0.02 3.12 16 27 H 0.06 2.71 6.23 -2.39 -0.01 2.69 16 28 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 29 H 0.01 0.58 6.72 -2.39 -0.02 0.56 16 30 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 31 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 32 H 0.02 0.70 8.00 -2.39 -0.02 0.68 16 33 H 0.09 2.46 6.81 -2.39 -0.02 2.44 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.45 6.96 -2.39 -0.02 1.43 16 36 H 0.08 1.77 8.09 -2.38 -0.02 1.75 16 37 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 38 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -65.25 346.31 4.54 -60.71 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.99 Total: 13.28 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 4.40 Total: -34.63 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.65 Total: -82.95 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.25 4.54 -60.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292298336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.885 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds