Wall clock time and date at job start Thu Apr 9 2020 13:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 H 1.09006 * 109.46843 * 54.99917 * 3 2 1 5 5 C 1.50699 * 109.46900 * 174.99738 * 3 2 1 6 6 H 1.08009 * 119.99697 * 120.00100 * 5 3 2 7 7 C 1.37872 * 120.00484 * 299.99776 * 5 3 2 8 8 N 1.31516 * 119.99734 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00314 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46884 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46812 * 120.00082 * 9 7 5 12 12 H 1.48494 * 109.47104 * 240.00408 * 9 7 5 13 13 N 1.46494 * 109.46919 * 294.99886 * 3 2 1 14 14 C 1.34779 * 120.00196 * 85.00305 * 13 3 2 15 15 O 1.21287 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00221 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.55000 * 299.87791 * 16 14 13 18 18 C 1.53447 * 109.46556 * 179.80800 * 16 14 13 19 19 C 1.53261 * 109.34760 * 170.64336 * 18 16 14 20 20 N 1.46471 * 108.91110 * 50.29329 * 19 18 16 21 21 C 1.36314 * 127.77354 * 162.84724 * 20 19 18 22 22 C 1.34856 * 106.69054 * 180.02562 * 21 20 19 23 23 N 1.34291 * 108.07128 * 359.97438 * 22 21 20 24 24 C 1.30087 * 109.21023 * 359.96982 * 23 22 21 25 25 C 1.51045 * 127.38904 * 180.12530 * 24 23 22 26 26 H 1.08996 * 109.46815 * 60.00185 * 1 2 3 27 27 H 1.09001 * 109.46689 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47419 * 300.00064 * 1 2 3 29 29 H 1.08996 * 109.47419 * 239.99936 * 2 1 3 30 30 H 1.09001 * 109.47182 * 120.00090 * 2 1 3 31 31 H 0.97000 * 119.99981 * 180.02562 * 8 7 5 32 32 H 0.97002 * 120.00255 * 264.99585 * 13 3 2 33 33 H 1.09000 * 109.64229 * 50.61741 * 18 16 14 34 34 H 1.09008 * 109.44422 * 290.54418 * 18 16 14 35 35 H 1.09002 * 109.58268 * 290.43074 * 19 18 16 36 36 H 1.09005 * 109.58123 * 170.15802 * 19 18 16 37 37 H 1.08009 * 126.65805 * 0.02562 * 21 20 19 38 38 H 1.08001 * 125.96274 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.71427 * 283.61271 * 25 24 23 40 40 H 1.09003 * 109.71583 * 44.25695 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8813 1.3819 10 1 6.5987 1.5473 0.1948 11 1 6.3989 1.6168 2.6103 12 1 6.4970 -0.5174 1.4630 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3396 2.6320 -0.4344 16 6 0.0367 3.3386 -2.6545 17 1 0.7261 4.1557 -2.8668 18 6 -1.3883 3.8922 -2.5221 19 6 -1.7051 4.7740 -3.7349 20 7 -1.3749 4.0371 -4.9569 21 6 -1.7861 4.3027 -6.2291 22 6 -1.2330 3.3606 -7.0196 23 7 -0.5026 2.5427 -6.2444 24 6 -0.5812 2.9410 -5.0085 25 6 0.0819 2.3214 -3.8012 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0611 2.9499 32 1 2.2720 2.1232 -1.9978 33 1 -1.4678 4.4853 -1.6110 34 1 -2.0966 3.0647 -2.4797 35 1 -1.1120 5.6873 -3.6875 36 1 -2.7655 5.0267 -3.7358 37 1 -2.4301 5.1110 -6.5431 38 1 -1.3560 3.2782 -8.0894 39 1 -0.4537 1.4175 -3.5109 40 1 1.1178 2.0763 -4.0359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330886600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:01 Heat of formation + Delta-G solvation = 9.618795 kcal Electronic energy + Delta-G solvation = -21891.644908 eV Core-core repulsion = 18706.736420 eV Total energy + Delta-G solvation = -3184.908488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.35634 -39.41921 -36.32902 -34.97687 -33.43339 -32.31595 -30.90545 -29.84041 -28.70920 -26.90687 -24.71135 -23.41923 -22.51703 -21.47961 -20.15833 -19.39025 -19.02336 -17.21844 -17.12147 -15.97458 -15.74804 -15.36988 -15.04396 -14.46787 -14.11067 -14.07812 -13.84607 -13.71572 -13.28351 -12.86501 -12.70818 -12.20729 -11.89895 -11.82280 -11.50606 -11.26793 -11.22514 -11.09591 -10.96195 -10.85859 -10.32530 -10.20058 -9.98717 -9.65652 -9.63819 -9.08428 -9.02687 -8.52453 -8.39264 -7.87465 -6.14659 -4.24074 1.99142 2.69670 3.10972 3.22289 3.24517 3.30889 3.33305 3.86954 4.26499 4.33609 4.41478 4.55417 4.71544 4.91200 5.02092 5.11127 5.16394 5.18116 5.36325 5.53846 5.56077 5.70135 5.78498 5.91287 6.06198 6.25616 6.37373 6.43397 6.63493 6.71282 7.01742 7.09950 7.16377 7.33301 7.40477 7.59501 7.70034 7.87260 8.08166 8.15878 8.61140 8.74388 9.06222 9.43465 10.90606 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.004147 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.471096 B = 6750.487270 C = 7084.534876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.704 5.704 14 C 0.509 3.491 15 O -0.546 6.546 16 C -0.115 4.115 17 H 0.098 0.902 18 C -0.113 4.113 19 C 0.103 3.897 20 N -0.456 5.456 21 C -0.060 4.060 22 C -0.034 4.034 23 N -0.491 5.491 24 C 0.216 3.784 25 C -0.024 4.024 26 H 0.038 0.962 27 H 0.022 0.978 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 8.085 -12.527 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.351 5.351 14 C 0.293 3.707 15 O -0.424 6.424 16 C -0.138 4.138 17 H 0.116 0.884 18 C -0.151 4.151 19 C -0.020 4.020 20 N -0.139 5.139 21 C -0.193 4.193 22 C -0.182 4.182 23 N -0.209 5.209 24 C -0.047 4.047 25 C -0.063 4.063 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.113 0.887 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.095 7.372 -11.793 16.617 hybrid contribution 0.751 0.792 -0.132 1.099 sum -8.344 8.163 -11.925 16.687 Atomic orbital electron populations 1.21836 0.98386 0.98075 1.01113 1.21937 0.92569 0.99781 1.02392 1.18809 0.94250 0.89223 0.80912 0.93290 1.21270 0.90717 1.38992 1.06287 0.92020 1.24880 0.98593 0.94772 0.95396 1.69902 1.35047 1.37636 1.09347 0.86413 0.84896 0.77815 0.78104 1.19727 1.20920 1.20849 1.46525 1.14492 1.55506 1.18603 1.19972 0.82962 0.79530 0.88271 1.90681 1.51463 1.59904 1.40393 1.21530 0.98477 0.99152 0.94607 0.88419 1.21754 0.96059 1.00397 0.96916 1.22084 1.02242 0.95425 0.82201 1.45477 1.37186 1.23655 1.07554 1.22539 1.07899 1.05106 0.83791 1.22355 1.01146 0.94915 0.99754 1.70074 1.22426 1.28043 1.00368 1.23254 0.97358 0.89027 0.95020 1.20143 1.01773 0.97450 0.86975 0.94333 0.95842 0.93213 0.94914 0.88290 0.92615 0.77852 0.88004 0.90071 0.89629 0.89013 0.81023 0.81472 0.88680 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.49 2.24 -69.08 -0.15 6.34 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.70 -13.53 4.93 -54.93 -0.27 -13.80 16 14 C 0.51 9.00 5.71 -10.99 -0.06 8.94 16 15 O -0.55 -11.49 12.97 5.55 0.07 -11.42 16 16 C -0.12 -1.49 2.55 -91.36 -0.23 -1.72 16 17 H 0.10 1.14 8.12 -51.93 -0.42 0.72 16 18 C -0.11 -1.27 4.69 -26.36 -0.12 -1.39 16 19 C 0.10 0.91 6.97 -3.92 -0.03 0.88 16 20 N -0.46 -5.22 3.13 -113.75 -0.36 -5.57 16 21 C -0.06 -0.63 11.64 -16.76 -0.20 -0.82 16 22 C -0.03 -0.41 11.87 -17.68 -0.21 -0.62 16 23 N -0.49 -7.41 11.24 -10.62 -0.12 -7.53 16 24 C 0.22 2.96 7.65 -155.24 -1.19 1.78 16 25 C -0.02 -0.31 5.47 -27.53 -0.15 -0.46 16 26 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.39 6.57 8.24 -40.82 -0.34 6.23 16 33 H 0.10 1.15 7.80 -51.93 -0.41 0.75 16 34 H 0.08 1.00 8.12 -51.92 -0.42 0.57 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 40 H 0.10 1.25 7.94 -51.93 -0.41 0.84 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -31.10 321.27 -8.69 -39.80 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.90 Total: 7.24 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.57 Total: -5.22 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.12 Total: -50.51 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.10 -8.69 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.414 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds