Wall clock time and date at job start Thu Apr 9 2020 13:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 N 1.46502 * 109.47260 * 180.02562 * 3 2 1 5 5 C 1.36779 * 119.99691 * 274.41065 * 4 3 2 6 6 H 1.08001 * 119.99627 * 135.17354 * 5 4 3 7 7 C 1.39106 * 119.99811 * 315.16935 * 5 4 3 8 8 N 1.31319 * 120.00260 * 1.24987 * 7 5 4 9 9 Si 1.86806 * 119.99755 * 181.25124 * 7 5 4 10 10 H 1.48492 * 109.47196 * 59.99974 * 9 7 5 11 11 H 1.48499 * 109.47127 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46898 * 299.99967 * 9 7 5 13 13 C 1.34777 * 119.99899 * 94.40779 * 4 3 2 14 14 O 1.21572 * 119.99731 * 184.22588 * 13 4 3 15 15 C 1.47974 * 120.00221 * 4.22126 * 13 4 3 16 16 N 1.33109 * 120.10055 * 76.61082 * 15 13 4 17 17 C 1.31786 * 119.91248 * 179.75203 * 16 15 13 18 18 C 1.50697 * 119.93426 * 180.27278 * 17 16 15 19 19 C 1.38765 * 120.13327 * 0.52389 * 17 16 15 20 20 C 1.50697 * 119.89478 * 179.75221 * 19 17 16 21 21 N 1.32142 * 120.20982 * 359.47196 * 19 17 16 22 22 C 1.32073 * 120.08240 * 0.25789 * 21 19 17 23 23 C 1.50701 * 120.06470 * 179.97438 * 22 21 19 24 24 H 1.09003 * 109.47472 * 60.00030 * 1 2 3 25 25 H 1.08996 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47153 * 299.99904 * 1 2 3 27 27 H 1.08995 * 109.46943 * 239.99691 * 2 1 3 28 28 H 1.09000 * 109.46737 * 119.99958 * 2 1 3 29 29 H 1.08996 * 109.47509 * 59.99478 * 3 2 1 30 30 H 1.09009 * 109.47185 * 299.99899 * 3 2 1 31 31 H 0.97000 * 119.99881 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47375 * 270.25074 * 18 17 16 33 33 H 1.08999 * 109.47333 * 30.24782 * 18 17 16 34 34 H 1.09004 * 109.47308 * 150.24552 * 18 17 16 35 35 H 1.09002 * 109.46934 * 269.72352 * 20 19 17 36 36 H 1.09003 * 109.47178 * 149.72407 * 20 19 17 37 37 H 1.08996 * 109.46963 * 29.71998 * 20 19 17 38 38 H 1.09002 * 109.46446 * 85.55753 * 23 22 21 39 39 H 1.09002 * 109.47013 * 205.55474 * 23 22 21 40 40 H 1.08996 * 109.47176 * 325.55870 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1893 1.3513 1.1801 6 1 5.0339 0.6834 1.2645 7 6 3.7975 2.1187 2.2722 8 7 2.7558 2.9125 2.1770 9 14 4.7535 2.0202 3.8741 10 1 6.1615 2.4273 3.6361 11 1 4.1382 2.9291 4.8744 12 1 4.7208 0.6262 4.3850 13 6 4.1784 1.5324 -1.1646 14 8 5.3916 1.4552 -1.1725 15 6 3.4410 1.7250 -2.4330 16 7 2.9492 2.9221 -2.7442 17 6 2.2973 3.0906 -3.8771 18 6 1.7457 4.4471 -4.2327 19 6 2.1134 2.0202 -4.7408 20 6 1.3623 2.2176 -6.0322 21 7 2.5995 0.8296 -4.4370 22 6 3.2587 0.6525 -3.3063 23 6 3.8124 -0.7057 -2.9600 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 2.4828 3.4480 2.9384 32 1 0.7324 4.5411 -3.8421 33 1 2.3764 5.2217 -3.7965 34 1 1.7291 4.5599 -5.3167 35 1 0.3016 2.0274 -5.8683 36 1 1.7436 1.5262 -6.7837 37 1 1.4983 3.2421 -6.3787 38 1 4.7938 -0.8256 -3.4190 39 1 3.9041 -0.7954 -1.8776 40 1 3.1400 -1.4781 -3.3331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330918483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:08 Heat of formation + Delta-G solvation = 3.007816 kcal Electronic energy + Delta-G solvation = -22472.198386 eV Core-core repulsion = 19287.003224 eV Total energy + Delta-G solvation = -3185.195162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04595 -38.38559 -35.33114 -34.66808 -33.98340 -32.68585 -31.20989 -30.07757 -28.74178 -26.36054 -25.66673 -24.39505 -23.11657 -21.76409 -20.86635 -19.49231 -17.80118 -17.00732 -16.32896 -15.42465 -15.03906 -14.91138 -14.33623 -13.89918 -13.71167 -13.54651 -13.36100 -13.08503 -12.98908 -12.89919 -12.44066 -12.36051 -12.03368 -11.91666 -11.69423 -11.59399 -11.41843 -11.20223 -11.19426 -10.99247 -10.70449 -10.43430 -10.37785 -10.31010 -9.82427 -9.18031 -8.97090 -8.55951 -8.34264 -7.47295 -6.25372 -4.12678 0.97479 1.43271 3.19031 3.24705 3.27265 3.54175 3.86670 4.05487 4.19071 4.38960 4.67857 4.75782 5.00255 5.06026 5.22993 5.32472 5.46478 5.53434 5.56999 5.66694 5.68439 5.76063 5.78735 5.86677 5.87686 5.98499 6.06314 6.14722 6.26060 6.27918 6.44261 6.55646 6.64922 6.69347 6.98481 7.36356 7.59877 7.65264 8.10679 8.26036 8.46033 9.06642 9.29393 9.88211 10.70446 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.005924 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.155395 B = 4725.101369 C = 4780.031581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.088 3.912 4 N -0.418 5.418 5 C -0.310 4.310 6 H 0.090 0.910 7 C 0.043 3.957 8 N -0.874 5.874 9 Si 0.927 3.073 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.520 3.480 14 O -0.563 6.563 15 C 0.082 3.918 16 N -0.405 5.405 17 C 0.069 3.931 18 C -0.099 4.099 19 C 0.073 3.927 20 C -0.098 4.098 21 N -0.440 5.440 22 C 0.100 3.900 23 C -0.098 4.098 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.040 0.960 31 H 0.270 0.730 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.180 -1.670 -10.413 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.035 4.035 4 N -0.136 5.136 5 C -0.438 4.438 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.512 5.512 9 Si 0.753 3.247 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.305 3.695 14 O -0.445 6.445 15 C -0.061 4.061 16 N -0.121 5.121 17 C -0.074 4.074 18 C -0.157 4.157 19 C -0.068 4.068 20 C -0.156 4.156 21 N -0.155 5.155 22 C -0.041 4.041 23 C -0.156 4.156 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.151 0.849 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.667 -1.575 -10.211 12.296 hybrid contribution 0.275 0.079 0.711 0.766 sum -6.392 -1.496 -9.500 11.547 Atomic orbital electron populations 1.21643 0.96454 1.00547 1.01340 1.21920 0.94843 0.99330 1.01447 1.22056 0.81817 0.94835 1.04811 1.43202 1.04901 1.61498 1.03964 1.19326 1.13910 1.23423 0.87094 0.89231 1.25565 0.96211 0.94124 1.00212 1.69473 1.24330 1.25513 1.31900 0.85999 0.80043 0.78228 0.80394 1.19596 1.20868 1.19766 1.17757 0.86719 0.82424 0.82610 1.90653 1.12936 1.55014 1.85907 1.22550 0.95843 0.89658 0.98040 1.68448 1.05229 1.22743 1.15713 1.22138 0.96711 0.97459 0.91060 1.20724 1.01553 0.91633 1.01782 1.22146 0.97381 0.89510 0.97809 1.20715 0.99460 1.03016 0.92406 1.68062 1.07795 1.23052 1.16635 1.22198 0.94562 0.97250 0.90076 1.20695 1.01107 0.90656 1.03124 0.93754 0.93451 0.92530 0.93822 0.91354 0.84852 0.94130 0.91888 0.90075 0.90197 0.90264 0.90197 0.90490 0.90120 0.89847 0.89884 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.68 6.24 -26.73 -0.17 -2.85 16 3 C 0.09 2.06 5.00 -4.04 -0.02 2.04 16 4 N -0.42 -10.94 2.52 -115.85 -0.29 -11.23 16 5 C -0.31 -8.55 8.83 -15.02 -0.13 -8.68 16 6 H 0.09 2.52 7.78 -52.49 -0.41 2.11 16 7 C 0.04 1.13 5.38 -17.45 -0.09 1.04 16 8 N -0.87 -23.44 10.74 55.50 0.60 -22.84 16 9 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.52 13.58 5.66 -12.27 -0.07 13.51 16 14 O -0.56 -16.31 17.04 5.30 0.09 -16.22 16 15 C 0.08 1.85 4.81 -82.85 -0.40 1.45 16 16 N -0.41 -8.70 9.78 -5.89 -0.06 -8.76 16 17 C 0.07 1.16 6.79 -82.42 -0.56 0.60 16 18 C -0.10 -1.19 9.78 36.00 0.35 -0.84 16 19 C 0.07 1.14 6.79 -82.27 -0.56 0.58 16 20 C -0.10 -1.00 9.79 36.00 0.35 -0.65 16 21 N -0.44 -7.77 10.34 -5.21 -0.05 -7.82 16 22 C 0.10 1.95 6.82 -82.02 -0.56 1.39 16 23 C -0.10 -1.67 9.66 36.01 0.35 -1.33 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.83 7.41 -51.93 -0.38 0.44 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.13 3.39 5.14 -51.93 -0.27 3.12 16 30 H 0.04 0.94 6.20 -51.92 -0.32 0.61 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.69 5.94 -51.93 -0.31 0.38 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.08 1.55 6.42 -51.93 -0.33 1.22 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -32.38 331.30 -6.58 -38.96 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.69 Total: 2.92 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.14 Total: 4.33 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.19 Total: -50.66 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.38 -6.58 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330918483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.972 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds