Wall clock time and date at job start Thu Apr 9 2020 13:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 N 1.46502 * 109.47260 * 180.02562 * 3 2 1 5 5 C 1.36779 * 119.99691 * 274.41065 * 4 3 2 6 6 H 1.08001 * 119.99627 * 135.17354 * 5 4 3 7 7 C 1.39106 * 119.99811 * 315.16935 * 5 4 3 8 8 N 1.31319 * 120.00260 * 1.24987 * 7 5 4 9 9 Si 1.86806 * 119.99755 * 181.25124 * 7 5 4 10 10 H 1.48492 * 109.47196 * 59.99974 * 9 7 5 11 11 H 1.48499 * 109.47127 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46898 * 299.99967 * 9 7 5 13 13 C 1.34777 * 119.99899 * 94.40779 * 4 3 2 14 14 O 1.21572 * 119.99731 * 184.22588 * 13 4 3 15 15 C 1.47974 * 120.00221 * 4.22126 * 13 4 3 16 16 N 1.33109 * 120.10055 * 76.61082 * 15 13 4 17 17 C 1.31786 * 119.91248 * 179.75203 * 16 15 13 18 18 C 1.50697 * 119.93426 * 180.27278 * 17 16 15 19 19 C 1.38765 * 120.13327 * 0.52389 * 17 16 15 20 20 C 1.50697 * 119.89478 * 179.75221 * 19 17 16 21 21 N 1.32142 * 120.20982 * 359.47196 * 19 17 16 22 22 C 1.32073 * 120.08240 * 0.25789 * 21 19 17 23 23 C 1.50701 * 120.06470 * 179.97438 * 22 21 19 24 24 H 1.09003 * 109.47472 * 60.00030 * 1 2 3 25 25 H 1.08996 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47153 * 299.99904 * 1 2 3 27 27 H 1.08995 * 109.46943 * 239.99691 * 2 1 3 28 28 H 1.09000 * 109.46737 * 119.99958 * 2 1 3 29 29 H 1.08996 * 109.47509 * 59.99478 * 3 2 1 30 30 H 1.09009 * 109.47185 * 299.99899 * 3 2 1 31 31 H 0.97000 * 119.99881 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47375 * 270.25074 * 18 17 16 33 33 H 1.08999 * 109.47333 * 30.24782 * 18 17 16 34 34 H 1.09004 * 109.47308 * 150.24552 * 18 17 16 35 35 H 1.09002 * 109.46934 * 269.72352 * 20 19 17 36 36 H 1.09003 * 109.47178 * 149.72407 * 20 19 17 37 37 H 1.08996 * 109.46963 * 29.71998 * 20 19 17 38 38 H 1.09002 * 109.46446 * 85.55753 * 23 22 21 39 39 H 1.09002 * 109.47013 * 205.55474 * 23 22 21 40 40 H 1.08996 * 109.47176 * 325.55870 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1893 1.3513 1.1801 6 1 5.0339 0.6834 1.2645 7 6 3.7975 2.1187 2.2722 8 7 2.7558 2.9125 2.1770 9 14 4.7535 2.0202 3.8741 10 1 6.1615 2.4273 3.6361 11 1 4.1382 2.9291 4.8744 12 1 4.7208 0.6262 4.3850 13 6 4.1784 1.5324 -1.1646 14 8 5.3916 1.4552 -1.1725 15 6 3.4410 1.7250 -2.4330 16 7 2.9492 2.9221 -2.7442 17 6 2.2973 3.0906 -3.8771 18 6 1.7457 4.4471 -4.2327 19 6 2.1134 2.0202 -4.7408 20 6 1.3623 2.2176 -6.0322 21 7 2.5995 0.8296 -4.4370 22 6 3.2587 0.6525 -3.3063 23 6 3.8124 -0.7057 -2.9600 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 2.4828 3.4480 2.9384 32 1 0.7324 4.5411 -3.8421 33 1 2.3764 5.2217 -3.7965 34 1 1.7291 4.5599 -5.3167 35 1 0.3016 2.0274 -5.8683 36 1 1.7436 1.5262 -6.7837 37 1 1.4983 3.2421 -6.3787 38 1 4.7938 -0.8256 -3.4190 39 1 3.9041 -0.7954 -1.8776 40 1 3.1400 -1.4781 -3.3331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330918483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:07 Heat of formation + Delta-G solvation = -18.686392 kcal Electronic energy + Delta-G solvation = -22473.139118 eV Core-core repulsion = 19287.003224 eV Total energy + Delta-G solvation = -3186.135893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.48660 -40.26978 -37.26923 -36.03207 -35.37387 -34.45980 -33.10763 -31.32006 -29.89798 -28.03609 -27.24460 -26.09397 -24.44940 -23.23506 -22.49931 -21.23193 -19.26829 -18.94119 -18.18539 -17.17792 -16.64005 -16.20951 -16.01749 -15.54425 -15.42904 -15.18041 -14.58279 -14.49718 -14.22792 -13.92096 -13.82924 -13.63038 -13.44543 -13.35715 -13.24922 -13.13558 -12.98381 -12.68225 -12.67422 -12.47045 -12.39530 -12.14811 -12.04235 -11.80867 -11.54874 -11.01329 -10.97546 -10.06881 -9.81517 -9.49709 -8.28262 -6.25009 -0.42940 0.01889 1.37512 1.39138 1.50153 1.71672 2.22008 2.46347 2.65085 2.94469 3.00784 3.29316 3.39417 3.67013 3.91828 4.03441 4.11597 4.18340 4.27457 4.49118 4.49460 4.54545 4.61695 4.65538 4.70951 4.79510 4.84833 4.92235 5.00976 5.04616 5.07861 5.11275 5.19392 5.31859 5.38084 5.50831 5.62939 6.18698 6.22652 6.44415 6.70688 7.02041 7.27322 7.86725 8.65863 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.005924 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.155395 B = 4725.101369 C = 4780.031581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.096 3.904 4 N -0.427 5.427 5 C -0.344 4.344 6 H 0.071 0.929 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.992 3.008 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.259 1.259 13 C 0.513 3.487 14 O -0.612 6.612 15 C 0.043 3.957 16 N -0.444 5.444 17 C 0.063 3.937 18 C -0.097 4.097 19 C 0.089 3.911 20 C -0.096 4.096 21 N -0.443 5.443 22 C 0.094 3.906 23 C -0.093 4.093 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.114 0.886 30 H 0.038 0.962 31 H 0.276 0.724 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -1.480 -12.226 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C -0.027 4.027 4 N -0.143 5.143 5 C -0.472 4.472 6 H 0.089 0.911 7 C -0.196 4.196 8 N -0.529 5.529 9 Si 0.814 3.186 10 H -0.205 1.205 11 H -0.193 1.193 12 H -0.183 1.183 13 C 0.300 3.700 14 O -0.498 6.498 15 C -0.097 4.097 16 N -0.161 5.161 17 C -0.081 4.081 18 C -0.154 4.154 19 C -0.054 4.054 20 C -0.153 4.153 21 N -0.159 5.159 22 C -0.045 4.045 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.004 -1.417 -12.001 15.071 hybrid contribution 0.902 0.127 1.121 1.444 sum -8.102 -1.290 -10.881 13.627 Atomic orbital electron populations 1.21581 0.93337 1.02486 1.01640 1.21819 0.97424 0.96587 1.00889 1.22004 0.80281 0.96989 1.03441 1.43436 1.06009 1.61029 1.03862 1.19400 1.14463 1.24670 0.88629 0.91119 1.26353 0.96846 0.93328 1.03038 1.69594 1.24854 1.25481 1.32980 0.85043 0.77958 0.79097 0.76499 1.20490 1.19277 1.18336 1.18282 0.86483 0.81274 0.83995 1.90576 1.15049 1.57082 1.87095 1.21919 0.98890 0.91475 0.97432 1.68319 1.06701 1.22712 1.18378 1.23015 0.95352 1.00077 0.89682 1.20935 1.01707 0.88256 1.04528 1.23147 0.95129 0.88182 0.98960 1.20971 0.99793 1.05307 0.89273 1.68230 1.08018 1.24177 1.15467 1.22299 0.94784 0.97104 0.90263 1.20679 1.02094 0.90713 1.01604 0.93019 0.90665 0.92637 0.93508 0.92752 0.86909 0.94365 0.91361 0.88289 0.91367 0.85990 0.87774 0.89571 0.86951 0.89303 0.92388 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.91 71.98 0.71 -3.41 16 2 C -0.13 -5.13 6.24 30.59 0.19 -4.94 16 3 C 0.10 4.63 5.00 86.38 0.43 5.06 16 4 N -0.43 -23.59 2.52 -638.70 -1.61 -25.20 16 5 C -0.34 -20.03 8.83 84.13 0.74 -19.29 16 6 H 0.07 4.26 7.78 -2.91 -0.02 4.24 16 7 C 0.01 0.36 5.38 84.98 0.46 0.82 16 8 N -0.89 -48.93 10.74 21.69 0.23 -48.70 16 9 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 C 0.51 28.46 5.66 86.82 0.49 28.95 16 14 O -0.61 -38.06 17.04 -3.94 -0.07 -38.13 16 15 C 0.04 2.02 4.81 41.84 0.20 2.22 16 16 N -0.44 -19.41 9.78 -172.56 -1.69 -21.10 16 17 C 0.06 2.01 6.79 42.69 0.29 2.30 16 18 C -0.10 -2.02 9.78 71.23 0.70 -1.32 16 19 C 0.09 2.51 6.79 42.64 0.29 2.80 16 20 C -0.10 -1.46 9.79 71.23 0.70 -0.76 16 21 N -0.44 -14.89 10.34 -170.41 -1.76 -16.65 16 22 C 0.09 3.71 6.82 42.83 0.29 4.00 16 23 C -0.09 -3.25 9.66 71.24 0.69 -2.56 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.81 7.41 -2.39 -0.02 1.79 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.27 16 29 H 0.11 5.94 5.14 -2.39 -0.01 5.93 16 30 H 0.04 1.83 6.20 -2.38 -0.01 1.81 16 31 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 1.45 5.94 -2.39 -0.01 1.44 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.11 1.03 5.93 -2.39 -0.01 1.02 16 38 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.06 2.29 6.42 -2.39 -0.02 2.28 16 40 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -76.15 331.30 4.36 -71.79 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.05 Total: 18.83 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.18 Total: 13.88 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.83 Total: -111.64 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.07 Total: -38.13 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -76.15 4.36 -71.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330918483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.100 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds