Wall clock time and date at job start Thu Apr 9 2020 13:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46863 * 2 1 4 4 N 1.46499 * 109.47120 * 180.02562 * 3 2 1 5 5 N 1.39937 * 125.75200 * 269.69020 * 4 3 2 6 6 C 1.30444 * 108.89675 * 179.84460 * 5 4 3 7 7 C 1.41293 * 108.02382 * 0.40916 * 6 5 4 8 8 C 1.47432 * 126.41324 * 179.75866 * 7 6 5 9 9 O 1.21608 * 119.99393 * 174.05912 * 8 7 6 10 10 N 1.34769 * 119.99987 * 354.06066 * 8 7 6 11 11 C 1.46504 * 119.99746 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47415 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00361 * 179.97438 * 12 11 10 15 15 N 1.31524 * 119.99965 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00348 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46667 * 60.00259 * 16 14 12 18 18 H 1.48501 * 109.47281 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47079 * 300.00423 * 16 14 12 20 20 C 1.34262 * 125.75947 * 89.99706 * 4 3 2 21 21 C 1.50697 * 126.28427 * 359.96167 * 20 4 3 22 22 C 1.53004 * 117.50029 * 128.80433 * 21 20 4 23 23 C 1.53004 * 117.50269 * 60.14409 * 21 20 4 24 24 H 1.09005 * 109.46691 * 60.00356 * 1 2 3 25 25 H 1.08997 * 109.47215 * 300.00141 * 1 2 3 26 26 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46732 * 119.99762 * 2 1 3 28 28 H 1.09002 * 109.46976 * 240.00255 * 2 1 3 29 29 H 1.09008 * 109.47393 * 299.99839 * 3 2 1 30 30 H 1.08997 * 109.47321 * 59.99923 * 3 2 1 31 31 H 1.08001 * 125.99202 * 180.15235 * 6 5 4 32 32 H 0.96996 * 120.00505 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.47226 * 299.99736 * 11 10 8 34 34 H 1.08996 * 109.47110 * 59.99713 * 11 10 8 35 35 H 0.96996 * 119.99849 * 180.02562 * 15 14 12 36 36 H 1.09001 * 115.55359 * 274.46746 * 21 20 4 37 37 H 1.09002 * 117.49251 * 359.97438 * 22 21 20 38 38 H 1.08994 * 117.50504 * 145.01342 * 22 21 20 39 39 H 1.09003 * 117.49354 * 214.97561 * 23 21 20 40 40 H 1.08994 * 117.49411 * 359.97210 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3231 1.4486 1.1347 6 6 5.5713 1.4433 0.7560 7 6 5.5996 1.4431 -0.6567 8 6 6.8033 1.4430 -1.5080 9 8 6.6948 1.3339 -2.7143 10 7 8.0237 1.5638 -0.9492 11 6 9.2198 1.5643 -1.7952 12 6 10.4461 1.7106 -0.9315 13 1 10.3446 1.7953 0.1404 14 6 11.6974 1.7364 -1.5096 15 7 11.8210 1.6339 -2.8150 16 14 13.2174 1.9185 -0.4391 17 1 13.2875 0.7850 0.5177 18 1 14.4298 1.9189 -1.2966 19 1 13.1430 3.1970 0.3127 20 6 4.2891 1.4427 -1.0905 21 6 3.8239 1.4420 -2.5238 22 6 4.4142 2.4997 -3.4587 23 6 2.9625 2.6184 -2.9877 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 6.4324 1.4436 1.4079 32 1 8.1102 1.6512 0.0129 33 1 9.2747 0.6261 -2.3474 34 1 9.1680 2.3965 -2.4972 35 1 12.7014 1.6517 -3.2217 36 1 3.6065 0.4613 -2.9471 37 1 5.1386 3.1963 -3.0367 38 1 4.5847 2.2151 -4.4969 39 1 2.1786 2.4116 -3.7163 40 1 2.7319 3.3925 -2.2559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331750998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:20 Heat of formation + Delta-G solvation = 49.139931 kcal Electronic energy + Delta-G solvation = -21261.896273 eV Core-core repulsion = 18078.701550 eV Total energy + Delta-G solvation = -3183.194723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39705 -38.19156 -36.94403 -35.50863 -34.01299 -32.28822 -31.54553 -30.00192 -27.53665 -26.25652 -23.80466 -22.65409 -22.50843 -22.02939 -21.40001 -19.76608 -19.06908 -17.55808 -16.40734 -15.86530 -15.50203 -15.07364 -15.02685 -14.78440 -14.43815 -14.15288 -14.00934 -13.62551 -13.21003 -12.79155 -12.50553 -12.30454 -11.95964 -11.84762 -11.81332 -11.58483 -11.42518 -11.18371 -11.08775 -10.91693 -10.82682 -10.49482 -10.24460 -10.10393 -9.34145 -9.30623 -8.90862 -8.65986 -8.41726 -7.69483 -6.11118 -4.17305 1.71714 2.35011 2.46586 3.29345 3.33911 3.35535 3.77458 4.16572 4.21124 4.34657 4.40180 4.51380 4.56383 4.78097 4.88219 4.90355 5.00375 5.13401 5.17079 5.24542 5.25177 5.32892 5.51871 5.56877 5.61370 5.63252 5.77014 5.86641 5.94579 6.14628 6.18238 6.33142 6.59071 6.93690 7.41068 7.56974 7.61164 7.67998 7.77943 8.04559 8.76253 8.88424 9.26553 9.49974 10.99136 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.003737 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.267609 B = 7490.263917 C = 8164.547630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.129 3.871 4 N -0.360 5.360 5 N -0.303 5.303 6 C 0.079 3.921 7 C -0.275 4.275 8 C 0.574 3.426 9 O -0.553 6.553 10 N -0.710 5.710 11 C 0.254 3.746 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.902 3.098 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.174 3.826 21 C -0.099 4.099 22 C -0.111 4.111 23 C -0.191 4.191 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.388 0.612 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.833 -0.200 4.406 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.008 3.992 4 N -0.139 5.139 5 N -0.123 5.123 6 C -0.108 4.108 7 C -0.289 4.289 8 C 0.360 3.640 9 O -0.433 6.433 10 N -0.358 5.358 11 C 0.133 3.867 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.524 5.524 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.043 3.957 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.228 4.228 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.206 0.794 32 H 0.220 0.780 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.665 -0.269 4.412 23.092 hybrid contribution 1.578 0.010 0.496 1.654 sum -21.086 -0.259 4.908 21.652 Atomic orbital electron populations 1.21691 0.94288 1.02468 1.02166 1.21920 0.96626 0.95817 1.03562 1.21851 0.74185 0.98628 1.04520 1.48420 1.06365 1.55918 1.03215 1.77118 1.01955 1.25750 1.07427 1.24064 0.95183 0.97332 0.94220 1.20368 0.93482 1.21587 0.93510 1.17224 0.82390 0.77418 0.87001 1.90713 1.86699 1.51704 1.14214 1.46249 1.06492 1.72089 1.10921 1.19053 0.79690 0.97642 0.90325 1.21215 0.90883 1.52340 0.93579 0.91985 1.24937 0.99139 0.94822 0.95086 1.69968 1.24184 1.48890 1.09378 0.86496 0.81727 0.78744 0.80067 1.20077 1.21133 1.20093 1.20503 0.89844 0.96458 0.88930 1.20348 1.06338 0.96371 0.88775 1.22767 0.93522 0.99306 0.99277 1.23202 0.96079 0.99625 1.03915 0.92270 0.92318 0.91972 0.90941 0.91168 0.88601 0.88778 0.79358 0.77992 0.95579 0.95581 0.92475 0.85916 0.88252 0.87893 0.88240 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.14 -1.15 6.26 -26.73 -0.17 -1.32 16 3 C 0.13 1.19 6.21 -4.04 -0.03 1.16 16 4 N -0.36 -4.81 3.58 -56.61 -0.20 -5.02 16 5 N -0.30 -4.56 12.50 30.86 0.39 -4.17 16 6 C 0.08 1.21 11.50 -16.98 -0.20 1.01 16 7 C -0.27 -4.78 6.10 -105.07 -0.64 -5.42 16 8 C 0.57 12.09 7.69 -12.52 -0.10 11.99 16 9 O -0.55 -13.02 13.65 5.27 0.07 -12.94 16 10 N -0.71 -15.51 5.54 -62.56 -0.35 -15.86 16 11 C 0.25 6.79 5.43 -5.19 -0.03 6.76 16 12 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 13 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.17 2.63 6.43 -81.60 -0.52 2.11 16 21 C -0.10 -1.30 5.18 -91.77 -0.47 -1.78 16 22 C -0.11 -1.55 8.06 -26.69 -0.22 -1.76 16 23 C -0.19 -1.97 8.95 -26.69 -0.24 -2.21 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.73 6.33 -51.92 -0.33 0.40 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.19 2.37 7.53 -52.49 -0.40 1.97 16 32 H 0.39 7.36 7.31 -40.82 -0.30 7.06 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.10 1.63 7.68 -51.93 -0.40 1.23 16 38 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -32.84 338.08 -7.95 -40.79 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.02 Total: 5.04 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.66 Total: -3.42 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.57 Total: -50.59 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.84 -7.95 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331750998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.933 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds