Wall clock time and date at job start Thu Apr 9 2020 13:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47093 * 2 1 4 4 N 1.46503 * 109.47126 * 120.00374 * 2 1 3 5 5 C 1.35851 * 126.13196 * 300.01830 * 4 2 1 6 6 N 1.30169 * 109.00128 * 179.97438 * 5 4 2 7 7 C 1.35760 * 108.86577 * 0.02562 * 6 5 4 8 8 C 1.47332 * 126.23592 * 179.97438 * 7 6 5 9 9 O 1.21614 * 120.00203 * 174.72601 * 8 7 6 10 10 N 1.34774 * 119.99662 * 354.72189 * 8 7 6 11 11 C 1.46498 * 119.99965 * 185.56813 * 10 8 7 12 12 C 1.53000 * 109.47496 * 185.19630 * 11 10 8 13 13 C 1.50702 * 115.54847 * 57.84016 * 12 11 10 14 14 H 1.08007 * 119.99813 * 264.64042 * 13 12 11 15 15 C 1.37873 * 119.99909 * 84.64495 * 13 12 11 16 16 N 1.31510 * 120.00048 * 1.96751 * 15 13 12 17 17 Si 1.86802 * 119.99807 * 181.97376 * 15 13 12 18 18 H 1.48492 * 109.47308 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47103 * 119.99890 * 17 15 13 20 20 H 1.48496 * 109.47341 * 239.99465 * 17 15 13 21 21 C 1.53003 * 117.49803 * 272.17381 * 12 11 10 22 22 C 1.53001 * 117.50303 * 203.51528 * 12 11 10 23 23 C 1.35380 * 126.13423 * 120.00217 * 4 2 1 24 24 H 1.09002 * 109.47152 * 299.99677 * 1 2 3 25 25 H 1.08998 * 109.47668 * 59.99896 * 1 2 3 26 26 H 1.09005 * 109.47488 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47152 * 240.00323 * 2 1 3 28 28 H 1.09001 * 109.46965 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47023 * 299.99582 * 3 2 1 30 30 H 1.09002 * 109.47297 * 60.00449 * 3 2 1 31 31 H 1.07999 * 125.49739 * 359.72494 * 5 4 2 32 32 H 0.97005 * 120.00250 * 5.56907 * 10 8 7 33 33 H 1.08994 * 109.47435 * 305.19692 * 11 10 8 34 34 H 1.09005 * 109.47160 * 65.19711 * 11 10 8 35 35 H 0.97006 * 120.00166 * 185.01184 * 16 15 13 36 36 H 1.09003 * 117.50049 * 359.97438 * 21 12 11 37 37 H 1.09003 * 117.49965 * 145.01405 * 21 12 11 38 38 H 1.08998 * 117.49772 * 214.97599 * 22 12 11 39 39 H 1.08998 * 117.49539 * 359.96865 * 22 12 11 40 40 H 1.07997 * 126.56286 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7678 -0.3371 2.4837 6 7 2.3628 -1.1794 3.2779 7 6 3.0167 -2.1030 2.5280 8 6 3.8151 -3.2316 3.0375 9 8 4.2754 -4.0492 2.2637 10 7 4.0354 -3.3578 4.3611 11 6 4.9284 -4.4074 4.8582 12 6 4.9036 -4.4159 6.3880 13 6 3.5487 -4.6219 7.0149 14 1 2.9606 -3.7696 7.3219 15 6 3.0601 -5.8982 7.1966 16 7 3.7923 -6.9370 6.8585 17 14 1.3578 -6.1520 7.9228 18 1 0.7434 -4.8325 8.2170 19 1 0.5097 -6.8878 6.9510 20 1 1.4673 -6.9375 9.1783 21 6 5.8863 -3.4962 7.1156 22 6 6.1142 -5.0099 7.1110 23 6 2.7998 -1.7959 1.2166 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1743 0.5089 2.7976 32 1 3.6027 -2.7537 4.9847 33 1 4.5952 -5.3753 4.4841 34 1 5.9440 -4.2143 4.5124 35 1 3.4218 -7.8316 6.9180 36 1 6.5507 -2.8853 6.5045 37 1 5.5529 -3.0404 8.0480 38 1 5.9307 -5.5492 8.0402 39 1 6.9281 -5.3950 6.4967 40 1 3.1792 -2.3316 0.3590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337188396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:25 Heat of formation + Delta-G solvation = 39.026895 kcal Electronic energy + Delta-G solvation = -21156.444383 eV Core-core repulsion = 17972.811126 eV Total energy + Delta-G solvation = -3183.633257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14422 -38.58090 -36.56422 -36.12744 -33.09321 -31.85871 -31.15842 -29.52105 -27.80544 -26.34211 -25.17270 -23.24325 -22.46368 -21.03308 -20.48588 -19.38159 -18.97184 -17.52820 -16.40900 -15.73026 -15.57000 -15.13386 -14.72667 -14.55811 -14.20958 -14.00921 -13.84884 -13.61925 -13.32961 -12.89025 -12.74780 -12.63351 -12.38209 -11.90681 -11.69838 -11.68013 -11.45533 -10.90701 -10.80261 -10.42933 -10.14971 -10.08148 -9.73130 -9.57139 -9.25865 -8.93464 -8.51999 -8.36759 -8.14587 -7.84893 -5.97581 -4.05206 1.82854 2.54154 2.67510 3.33573 3.41841 3.45788 4.04503 4.11181 4.16666 4.41735 4.46288 4.51950 4.63680 4.70833 5.00758 5.14648 5.19921 5.29211 5.31384 5.38673 5.47792 5.53184 5.64119 5.77567 6.12435 6.15243 6.43685 6.57332 6.61714 6.65106 6.81299 6.98912 7.09322 7.20651 7.45155 7.51725 7.62626 7.92733 7.93957 8.45490 8.57406 8.96305 9.08557 9.61515 11.10823 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.004188 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.818602 B = 6684.518759 C = 7275.586267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 C -0.163 4.163 4 N -0.456 5.456 5 C 0.180 3.820 6 N -0.457 5.457 7 C -0.048 4.048 8 C 0.589 3.411 9 O -0.565 6.565 10 N -0.684 5.684 11 C 0.163 3.837 12 C 0.026 3.974 13 C -0.493 4.493 14 H 0.061 0.939 15 C 0.073 3.927 16 N -0.876 5.876 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.211 4.211 22 C -0.145 4.145 23 C 0.022 3.978 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.205 0.795 32 H 0.409 0.591 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.259 0.741 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 16.072 -13.899 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.140 5.140 5 C -0.104 4.104 6 N -0.175 5.175 7 C -0.177 4.177 8 C 0.374 3.626 9 O -0.445 6.445 10 N -0.331 5.331 11 C 0.039 3.961 12 C 0.025 3.975 13 C -0.531 4.531 14 H 0.079 0.921 15 C -0.130 4.130 16 N -0.513 5.513 17 Si 0.716 3.284 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.249 4.249 22 C -0.183 4.183 23 C -0.116 4.116 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.221 0.779 32 H 0.245 0.755 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.840 15.347 -13.580 21.056 hybrid contribution -1.206 0.015 -0.226 1.228 sum -6.047 15.362 -13.806 21.521 Atomic orbital electron populations 1.22188 0.93011 1.03539 1.03450 1.21513 0.95648 0.94093 0.86426 1.22185 1.02367 0.94106 1.03458 1.45605 1.38136 1.22186 1.08038 1.24985 1.04443 1.02209 0.78720 1.70690 1.10491 1.03824 1.32525 1.20841 1.06572 0.99976 0.90325 1.16933 0.79577 0.83057 0.83036 1.90734 1.53556 1.42972 1.57217 1.45738 1.46924 1.34503 1.05947 1.20980 0.90016 0.90276 0.94794 1.19038 0.91475 0.98371 0.88628 1.20402 1.00457 0.92078 1.40144 0.92086 1.24963 0.97038 0.96078 0.94966 1.70004 1.35330 0.98304 1.47660 0.86596 0.84749 0.78277 0.78773 1.19642 1.21057 1.21111 1.23041 1.05681 0.93374 1.02762 1.22465 0.99953 0.93092 1.02759 1.22545 0.98330 0.90906 0.99789 0.91424 0.90398 0.91492 0.88020 0.91554 0.90406 0.91429 0.77891 0.75540 0.90973 0.94664 0.93063 0.91701 0.90391 0.89638 0.91817 0.79863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.24 37.15 0.34 -0.52 16 2 C 0.13 0.80 3.57 -67.93 -0.24 0.56 16 3 C -0.16 -0.80 9.24 37.16 0.34 -0.46 16 4 N -0.46 -4.87 2.59 -111.25 -0.29 -5.15 16 5 C 0.18 2.17 11.53 -89.91 -1.04 1.13 16 6 N -0.46 -7.64 11.02 -11.03 -0.12 -7.76 16 7 C -0.05 -0.86 6.97 -83.09 -0.58 -1.44 16 8 C 0.59 12.80 7.80 -12.56 -0.10 12.71 16 9 O -0.56 -13.58 16.86 5.27 0.09 -13.49 16 10 N -0.68 -15.35 5.37 -61.42 -0.33 -15.68 16 11 C 0.16 3.95 5.57 -4.04 -0.02 3.93 16 12 C 0.03 0.64 1.51 -155.66 -0.23 0.40 16 13 C -0.49 -13.42 8.38 -34.44 -0.29 -13.71 16 14 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 15 C 0.07 2.03 5.43 -17.82 -0.10 1.93 16 16 N -0.88 -25.25 12.72 55.43 0.71 -24.55 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.21 -4.66 9.94 -26.69 -0.27 -4.93 16 22 C -0.14 -3.45 9.26 -26.69 -0.25 -3.70 16 23 C 0.02 0.31 11.22 -16.64 -0.19 0.12 16 24 H 0.07 0.35 7.94 -51.93 -0.41 -0.07 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.32 7.94 -51.93 -0.41 -0.09 16 31 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.41 9.01 7.97 -40.82 -0.33 8.69 16 33 H 0.07 1.98 8.09 -51.93 -0.42 1.56 16 34 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.18 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -33.12 344.58 -8.57 -41.69 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.18 Total: 7.15 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.61 Total: -3.97 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.03 Total: -53.14 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.12 -8.57 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337188396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.717 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds