Wall clock time and date at job start Thu Apr 9 2020 13:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47093 * 2 1 4 4 N 1.46503 * 109.47126 * 120.00374 * 2 1 3 5 5 C 1.35851 * 126.13196 * 300.01830 * 4 2 1 6 6 N 1.30169 * 109.00128 * 179.97438 * 5 4 2 7 7 C 1.35760 * 108.86577 * 0.02562 * 6 5 4 8 8 C 1.47332 * 126.23592 * 179.97438 * 7 6 5 9 9 O 1.21614 * 120.00203 * 174.72601 * 8 7 6 10 10 N 1.34774 * 119.99662 * 354.72189 * 8 7 6 11 11 C 1.46498 * 119.99965 * 185.56813 * 10 8 7 12 12 C 1.53000 * 109.47496 * 185.19630 * 11 10 8 13 13 C 1.50702 * 115.54847 * 57.84016 * 12 11 10 14 14 H 1.08007 * 119.99813 * 264.64042 * 13 12 11 15 15 C 1.37873 * 119.99909 * 84.64495 * 13 12 11 16 16 N 1.31510 * 120.00048 * 1.96751 * 15 13 12 17 17 Si 1.86802 * 119.99807 * 181.97376 * 15 13 12 18 18 H 1.48492 * 109.47308 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47103 * 119.99890 * 17 15 13 20 20 H 1.48496 * 109.47341 * 239.99465 * 17 15 13 21 21 C 1.53003 * 117.49803 * 272.17381 * 12 11 10 22 22 C 1.53001 * 117.50303 * 203.51528 * 12 11 10 23 23 C 1.35380 * 126.13423 * 120.00217 * 4 2 1 24 24 H 1.09002 * 109.47152 * 299.99677 * 1 2 3 25 25 H 1.08998 * 109.47668 * 59.99896 * 1 2 3 26 26 H 1.09005 * 109.47488 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47152 * 240.00323 * 2 1 3 28 28 H 1.09001 * 109.46965 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47023 * 299.99582 * 3 2 1 30 30 H 1.09002 * 109.47297 * 60.00449 * 3 2 1 31 31 H 1.07999 * 125.49739 * 359.72494 * 5 4 2 32 32 H 0.97005 * 120.00250 * 5.56907 * 10 8 7 33 33 H 1.08994 * 109.47435 * 305.19692 * 11 10 8 34 34 H 1.09005 * 109.47160 * 65.19711 * 11 10 8 35 35 H 0.97006 * 120.00166 * 185.01184 * 16 15 13 36 36 H 1.09003 * 117.50049 * 359.97438 * 21 12 11 37 37 H 1.09003 * 117.49965 * 145.01405 * 21 12 11 38 38 H 1.08998 * 117.49772 * 214.97599 * 22 12 11 39 39 H 1.08998 * 117.49539 * 359.96865 * 22 12 11 40 40 H 1.07997 * 126.56286 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7678 -0.3371 2.4837 6 7 2.3628 -1.1794 3.2779 7 6 3.0167 -2.1030 2.5280 8 6 3.8151 -3.2316 3.0375 9 8 4.2754 -4.0492 2.2637 10 7 4.0354 -3.3578 4.3611 11 6 4.9284 -4.4074 4.8582 12 6 4.9036 -4.4159 6.3880 13 6 3.5487 -4.6219 7.0149 14 1 2.9606 -3.7696 7.3219 15 6 3.0601 -5.8982 7.1966 16 7 3.7923 -6.9370 6.8585 17 14 1.3578 -6.1520 7.9228 18 1 0.7434 -4.8325 8.2170 19 1 0.5097 -6.8878 6.9510 20 1 1.4673 -6.9375 9.1783 21 6 5.8863 -3.4962 7.1156 22 6 6.1142 -5.0099 7.1110 23 6 2.7998 -1.7959 1.2166 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1743 0.5089 2.7976 32 1 3.6027 -2.7537 4.9847 33 1 4.5952 -5.3753 4.4841 34 1 5.9440 -4.2143 4.5124 35 1 3.4218 -7.8316 6.9180 36 1 6.5507 -2.8853 6.5045 37 1 5.5529 -3.0404 8.0480 38 1 5.9307 -5.5492 8.0402 39 1 6.9281 -5.3950 6.4967 40 1 3.1792 -2.3316 0.3590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337188396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:25 Heat of formation + Delta-G solvation = 18.619876 kcal Electronic energy + Delta-G solvation = -21157.329298 eV Core-core repulsion = 17972.811126 eV Total energy + Delta-G solvation = -3184.518172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.18061 -40.28838 -38.41491 -36.88690 -34.88842 -33.95855 -32.05375 -30.72153 -28.17319 -28.16190 -27.18515 -23.99182 -23.87988 -22.89374 -21.48183 -21.24141 -20.51014 -18.62919 -17.98728 -17.26720 -16.77872 -16.65041 -16.52271 -15.81591 -15.63654 -15.24054 -14.96518 -14.77589 -14.70135 -14.26463 -13.98266 -13.65614 -13.44808 -13.14906 -13.08351 -12.88593 -12.86258 -12.36232 -12.34829 -12.13297 -12.01988 -11.45408 -11.26647 -10.99684 -10.94139 -10.71268 -10.41364 -10.09271 -9.85818 -9.50455 -8.09837 -6.22192 0.62625 1.39366 1.42107 1.51472 1.52728 1.69456 2.41973 2.52460 2.61615 3.18830 3.46712 3.55098 3.63874 3.85966 3.97059 4.13235 4.19865 4.28221 4.48812 4.54487 4.66568 4.68656 4.70497 4.71268 4.85162 4.87484 5.00322 5.04833 5.05977 5.26323 5.27683 5.28608 5.51090 5.56248 5.62635 5.72187 5.78196 6.18131 6.37996 6.69972 6.84459 6.99832 7.38418 7.46949 8.98359 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.004188 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.818602 B = 6684.518759 C = 7275.586267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 C -0.159 4.159 4 N -0.444 5.444 5 C 0.197 3.803 6 N -0.499 5.499 7 C -0.094 4.094 8 C 0.585 3.415 9 O -0.599 6.599 10 N -0.686 5.686 11 C 0.178 3.822 12 C 0.000 4.000 13 C -0.500 4.500 14 H 0.057 0.943 15 C 0.025 3.975 16 N -0.907 5.907 17 Si 0.947 3.053 18 H -0.264 1.264 19 H -0.288 1.288 20 H -0.280 1.280 21 C -0.180 4.180 22 C -0.150 4.150 23 C 0.042 3.958 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.050 0.950 27 H 0.115 0.885 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.245 0.755 32 H 0.410 0.590 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 18.855 -15.018 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 C -0.217 4.217 4 N -0.125 5.125 5 C -0.087 4.087 6 N -0.218 5.218 7 C -0.222 4.222 8 C 0.373 3.627 9 O -0.482 6.482 10 N -0.334 5.334 11 C 0.054 3.946 12 C -0.001 4.001 13 C -0.538 4.538 14 H 0.075 0.925 15 C -0.176 4.176 16 N -0.545 5.545 17 Si 0.774 3.226 18 H -0.188 1.188 19 H -0.214 1.214 20 H -0.206 1.206 21 C -0.217 4.217 22 C -0.188 4.188 23 C -0.099 4.099 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.261 0.739 32 H 0.246 0.754 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.259 18.175 -14.705 24.202 hybrid contribution -0.814 -0.737 0.017 1.098 sum -7.072 17.438 -14.689 23.872 Atomic orbital electron populations 1.22194 0.91747 1.02930 1.04970 1.21948 0.96548 0.94763 0.84908 1.22183 1.01558 0.92972 1.04957 1.45916 1.36472 1.20912 1.09207 1.25706 1.02673 1.01646 0.78696 1.70580 1.12103 1.04904 1.34217 1.20400 1.09197 1.00579 0.92045 1.17502 0.79215 0.83672 0.82322 1.90689 1.55143 1.44609 1.57736 1.45676 1.47060 1.34067 1.06561 1.20623 0.90544 0.88994 0.94483 1.19071 0.91251 1.00921 0.88840 1.20649 1.01516 0.91934 1.39682 0.92464 1.25673 1.00338 0.96010 0.95551 1.70115 1.36779 0.98506 1.49052 0.85667 0.80723 0.78300 0.77951 1.18845 1.21427 1.20551 1.23030 1.03814 0.92339 1.02505 1.22388 0.99882 0.94618 1.01899 1.22712 0.97242 0.91210 0.98701 0.90982 0.87872 0.93126 0.86734 0.92794 0.87947 0.90950 0.73872 0.75375 0.95159 0.93968 0.93259 0.89303 0.89753 0.91625 0.90876 0.78418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.24 71.98 0.67 -0.44 16 2 C 0.12 1.10 3.57 44.99 0.16 1.26 16 3 C -0.16 -0.96 9.24 71.98 0.67 -0.29 16 4 N -0.44 -8.34 2.59 -505.88 -1.31 -9.65 16 5 C 0.20 4.26 11.53 180.10 2.08 6.34 16 6 N -0.50 -16.31 11.02 -188.81 -2.08 -18.39 16 7 C -0.09 -3.40 6.97 40.51 0.28 -3.11 16 8 C 0.59 26.24 7.80 86.64 0.68 26.92 16 9 O -0.60 -29.92 16.86 -4.07 -0.07 -29.99 16 10 N -0.69 -31.75 5.37 -466.47 -2.50 -34.25 16 11 C 0.18 8.92 5.57 86.38 0.48 9.40 16 12 C 0.00 -0.01 1.51 -52.93 -0.08 -0.09 16 13 C -0.50 -27.58 8.38 25.60 0.21 -27.37 16 14 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 15 C 0.02 1.39 5.43 84.65 0.46 1.85 16 16 N -0.91 -53.63 12.72 21.45 0.27 -53.36 16 17 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 18 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 C -0.18 -7.75 9.94 30.62 0.30 -7.45 16 22 C -0.15 -7.21 9.26 30.62 0.28 -6.92 16 23 C 0.04 1.14 11.22 83.72 0.94 2.08 16 24 H 0.07 0.45 7.94 -2.39 -0.02 0.44 16 25 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.11 0.82 8.07 -2.39 -0.02 0.80 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 0.39 7.94 -2.39 -0.02 0.37 16 31 H 0.25 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.41 18.54 7.97 -92.70 -0.74 17.80 16 33 H 0.03 1.75 8.09 -2.39 -0.02 1.73 16 34 H 0.04 2.01 8.11 -2.38 -0.02 1.99 16 35 H 0.26 14.68 8.32 -92.70 -0.77 13.90 16 36 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.20 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -74.35 344.58 3.75 -70.60 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.29 Total: 25.93 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 7.13 Total: 2.17 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.62 Total: -115.65 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.07 Total: -29.99 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -74.35 3.75 -70.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337188396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.219 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds