Wall clock time and date at job start Thu Apr 9 2020 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47231 * 2 1 4 4 N 1.46503 * 109.46996 * 119.99944 * 2 1 3 5 5 C 1.38454 * 119.99800 * 84.99924 * 4 2 1 6 6 C 1.39395 * 119.54075 * 0.02562 * 5 4 2 7 7 C 1.36854 * 119.37601 * 180.02562 * 6 5 4 8 8 C 1.40346 * 118.49827 * 359.97438 * 7 6 5 9 9 C 1.47541 * 120.47745 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00008 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99728 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72391 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47037 * 59.99882 * 18 16 14 20 20 H 1.48501 * 109.46667 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47133 * 299.99829 * 18 16 14 22 22 C 1.39558 * 119.04551 * 0.25568 * 8 7 6 23 23 N 1.31672 * 120.52000 * 359.47567 * 22 8 7 24 24 H 1.09001 * 109.47103 * 60.00110 * 1 2 3 25 25 H 1.08996 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47286 * 300.00150 * 1 2 3 27 27 H 1.09001 * 109.47286 * 239.99850 * 2 1 3 28 28 H 1.08998 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46987 * 299.99962 * 3 2 1 30 30 H 1.09001 * 109.47108 * 59.99741 * 3 2 1 31 31 H 0.96998 * 119.99987 * 264.99877 * 4 2 1 32 32 H 1.07994 * 120.31254 * 0.03489 * 6 5 4 33 33 H 1.08008 * 120.75097 * 180.02562 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 36 36 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 37 37 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 38 38 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 39 39 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 40 40 H 1.08001 * 119.74277 * 179.72540 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1505 -2.0688 1.1943 6 6 1.8167 -2.7897 0.0489 7 6 1.9481 -4.1519 0.0510 8 6 2.4186 -4.7775 1.2159 9 6 2.5764 -6.2436 1.2664 10 8 2.2987 -6.9188 0.2940 11 7 3.0295 -6.8343 2.3899 12 6 3.1805 -8.2905 2.4420 13 6 3.7006 -8.7003 3.8214 14 6 3.8566 -10.1982 3.8748 15 1 3.6090 -10.7980 3.0115 16 6 4.3152 -10.8029 5.0259 17 7 4.6161 -10.0726 6.0774 18 14 4.5078 -12.6599 5.0924 19 1 5.4716 -13.0951 4.0499 20 1 5.0127 -13.0575 6.4311 21 1 3.1916 -13.3031 4.8492 22 6 2.7293 -3.9935 2.3278 23 7 2.5932 -2.6846 2.2821 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.2490 -0.1823 1.9895 32 1 1.4579 -2.2781 -0.8319 33 1 1.6963 -4.7324 -0.8244 34 1 3.2515 -6.2956 3.1655 35 1 2.2145 -8.7627 2.2630 36 1 3.8884 -8.6101 1.6773 37 1 4.6666 -8.2282 4.0004 38 1 2.9927 -8.3808 4.5863 39 1 4.9391 -10.4980 6.8871 40 1 3.0879 -4.4636 3.2316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345980247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:35 Heat of formation + Delta-G solvation = -35.470779 kcal Electronic energy + Delta-G solvation = -20271.064244 eV Core-core repulsion = 17084.200525 eV Total energy + Delta-G solvation = -3186.863719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66936 -40.22667 -37.94605 -36.61230 -34.85288 -33.84981 -33.06087 -31.72407 -29.95019 -28.08652 -26.79061 -25.09826 -24.34831 -22.83202 -22.21689 -21.33694 -19.24208 -18.56888 -18.28849 -17.84641 -16.55747 -16.48541 -16.47649 -16.15300 -15.69388 -15.52528 -15.08643 -14.83044 -14.54885 -14.30644 -14.03087 -13.89185 -13.74081 -13.20284 -13.05719 -12.92021 -12.89806 -12.53550 -12.36325 -12.21921 -11.95971 -11.69393 -11.47497 -11.27295 -11.08709 -10.87510 -10.58725 -10.47125 -10.04486 -8.78841 -8.22401 -6.32878 -0.14725 0.31313 1.42757 1.45304 1.53193 1.92034 2.05589 2.25294 2.46743 2.93242 3.12156 3.48754 3.81432 3.88992 3.91065 3.99977 4.09437 4.18524 4.32966 4.50341 4.51437 4.65743 4.76985 4.82450 4.86440 4.88938 4.95360 4.99339 5.20932 5.27359 5.29167 5.37017 5.42437 5.50428 5.59944 5.80075 5.98271 6.17557 6.47462 6.61350 6.80067 7.04088 7.25047 7.36134 8.89259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047368 B = 0.002625 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.971759 B =10664.389894 C =11100.478165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 C -0.156 4.156 4 N -0.703 5.703 5 C 0.418 3.582 6 C -0.240 4.240 7 C 0.017 3.983 8 C -0.266 4.266 9 C 0.562 3.438 10 O -0.592 6.592 11 N -0.715 5.715 12 C 0.141 3.859 13 C 0.022 3.978 14 C -0.547 4.547 15 H 0.060 0.940 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 C 0.193 3.807 23 N -0.565 5.565 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.409 0.591 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.408 0.592 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 25.241 -11.947 28.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.033 3.967 3 C -0.213 4.213 4 N -0.333 5.333 5 C 0.180 3.820 6 C -0.264 4.264 7 C -0.009 4.009 8 C -0.275 4.275 9 C 0.352 3.648 10 O -0.474 6.474 11 N -0.365 5.365 12 C 0.018 3.982 13 C -0.016 4.016 14 C -0.586 4.586 15 H 0.078 0.922 16 C -0.193 4.193 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 C 0.033 3.967 23 N -0.284 5.284 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.245 0.755 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.244 0.756 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.683 25.377 -11.912 28.819 hybrid contribution 0.204 -1.300 0.426 1.383 sum -6.479 24.077 -11.486 27.452 Atomic orbital electron populations 1.22299 0.94815 1.02221 1.03373 1.21289 0.94378 0.94027 0.86986 1.22039 1.01714 0.93480 1.04103 1.44840 1.69268 1.01475 1.17751 1.18849 0.87347 0.86699 0.89092 1.21326 1.11193 0.93746 1.00150 1.21264 0.88818 0.94403 0.96413 1.20491 1.15457 0.92643 0.98903 1.18402 0.76177 0.87940 0.82317 1.90702 1.53412 1.66533 1.36759 1.46044 1.66083 1.08768 1.15626 1.21259 0.99558 0.78481 0.98932 1.19146 0.95616 0.95880 0.90915 1.21441 1.44740 0.93109 0.99263 0.92221 1.25883 0.94726 1.03510 0.95133 1.70052 1.45251 1.37540 1.03745 0.85493 0.78883 0.79233 0.77402 1.19323 1.20618 1.19343 1.22824 0.89373 0.87906 0.96616 1.67304 1.22233 1.11177 1.27636 0.89525 0.93339 0.92341 0.89188 0.92108 0.89065 0.91541 0.75473 0.81833 0.83802 0.75565 0.93345 0.93327 0.97214 0.97222 0.92543 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.39 71.98 0.68 -0.69 16 2 C 0.14 1.16 2.86 44.99 0.13 1.29 16 3 C -0.16 -0.77 9.38 71.98 0.68 -0.10 16 4 N -0.70 -9.84 5.22 -324.63 -1.70 -11.54 16 5 C 0.42 8.65 7.62 133.25 1.01 9.67 16 6 C -0.24 -4.68 8.74 22.22 0.19 -4.49 16 7 C 0.02 0.42 9.65 22.46 0.22 0.64 16 8 C -0.27 -7.80 5.89 -19.99 -0.12 -7.92 16 9 C 0.56 20.69 7.77 86.70 0.67 21.36 16 10 O -0.59 -25.81 16.41 -4.01 -0.07 -25.88 16 11 N -0.71 -26.39 5.51 -466.25 -2.57 -28.96 16 12 C 0.14 6.27 5.61 86.38 0.48 6.75 16 13 C 0.02 1.12 5.09 29.85 0.15 1.27 16 14 C -0.55 -30.95 9.11 25.60 0.23 -30.72 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 16 C 0.01 0.35 5.46 84.65 0.46 0.82 16 17 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 18 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 C 0.19 5.04 10.71 85.04 0.91 5.95 16 23 N -0.57 -14.09 10.38 -192.33 -2.00 -16.08 16 24 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16 25 H 0.05 0.55 7.63 -2.39 -0.02 0.53 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 0.70 6.42 -2.39 -0.02 0.69 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.41 5.26 8.72 -92.71 -0.81 4.45 16 32 H 0.16 2.16 6.01 -2.91 -0.02 2.14 16 33 H 0.14 3.52 7.73 -2.91 -0.02 3.50 16 34 H 0.41 12.94 6.52 -92.71 -0.60 12.34 16 35 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.17 3.90 6.41 -2.91 -0.02 3.88 16 Total: -1.00 -70.56 337.73 1.34 -69.22 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.35 Total: 17.89 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.70 Total: 3.84 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -5.98 Total: -111.15 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.07 Total: -25.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.56 1.34 -69.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345980247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.753 kcal (2) G-P(sol) polarization free energy of solvation -70.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds