Wall clock time and date at job start Thu Apr 9 2020 13:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47074 * 2 1 4 4 C 1.38635 * 120.47053 * 258.20221 * 3 2 1 5 5 C 1.38583 * 118.49010 * 180.25536 * 4 3 2 6 6 C 1.38599 * 119.34778 * 359.43462 * 5 4 3 7 7 N 1.31496 * 120.90349 * 0.58273 * 6 5 4 8 8 C 1.32736 * 121.64169 * 359.71399 * 7 6 5 9 9 C 1.48176 * 119.72251 * 179.97438 * 8 7 6 10 10 O 1.21515 * 119.99673 * 185.29315 * 9 8 7 11 11 N 1.34772 * 119.99827 * 5.29588 * 9 8 7 12 12 C 1.46502 * 120.00156 * 179.97438 * 11 9 8 13 13 C 1.52990 * 109.47325 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.47303 * 294.99860 * 13 12 11 15 15 C 1.52998 * 109.47342 * 175.00141 * 13 12 11 16 16 N 1.46500 * 109.47285 * 55.00085 * 13 12 11 17 17 C 1.36934 * 120.00151 * 205.00080 * 16 13 12 18 18 H 1.07994 * 120.00044 * 359.97438 * 17 16 13 19 19 C 1.38816 * 120.00174 * 179.97438 * 17 16 13 20 20 N 1.31624 * 119.99442 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00339 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46902 * 60.00274 * 21 19 17 23 23 H 1.48500 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47148 * 300.00353 * 21 19 17 25 25 H 1.09004 * 109.47306 * 299.99956 * 1 2 3 26 26 H 1.09000 * 109.47750 * 60.00300 * 1 2 3 27 27 H 1.09001 * 109.47231 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47127 * 239.99528 * 2 1 3 29 29 H 1.09000 * 109.47016 * 119.99825 * 2 1 3 30 30 H 1.08004 * 120.75208 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.32388 * 179.70727 * 5 4 3 32 32 H 1.08001 * 119.54823 * 180.30066 * 6 5 4 33 33 H 0.97001 * 119.99784 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.46937 * 300.00037 * 12 11 9 35 35 H 1.09002 * 109.46736 * 59.99591 * 12 11 9 36 36 H 1.09001 * 109.46913 * 59.99915 * 15 13 12 37 37 H 1.09000 * 109.47427 * 180.02562 * 15 13 12 38 38 H 1.09004 * 109.46692 * 300.00093 * 15 13 12 39 39 H 0.96997 * 119.99674 * 24.99739 * 16 13 12 40 40 H 0.97007 * 119.99462 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.4969 2.0022 -1.1696 5 6 2.9543 3.3094 -1.1217 6 6 2.9233 3.9962 0.0818 7 7 2.4773 3.4205 1.1766 8 6 2.0359 2.1686 1.1749 9 6 1.5432 1.5616 2.4336 10 8 1.2285 0.3882 2.4597 11 7 1.4439 2.3110 3.5494 12 6 0.9562 1.7110 4.7937 13 6 0.9416 2.7691 5.8986 14 1 1.9626 3.0858 6.1120 15 6 0.3164 2.1773 7.1634 16 7 0.1541 3.9236 5.4589 17 6 0.3924 5.1600 5.9971 18 1 1.1605 5.2840 6.7460 19 6 -0.3535 6.2540 5.5800 20 7 -1.2900 6.1026 4.6676 21 14 -0.0290 7.9405 6.3147 22 1 1.3752 8.3380 6.0403 23 1 -0.9525 8.9315 5.7062 24 1 -0.2522 7.8925 7.7820 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 2.5065 1.4473 -2.0962 31 1 3.3272 3.7898 -2.0142 32 1 3.2744 5.0168 0.1218 33 1 1.6954 3.2476 3.5285 34 1 -0.0536 1.3298 4.6419 35 1 1.6139 0.8918 5.0842 36 1 0.9024 1.3184 7.4906 37 1 0.3056 2.9313 7.9505 38 1 -0.7045 1.8606 6.9500 39 1 -0.5360 3.8121 4.7865 40 1 -1.8115 6.8670 4.3765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752882562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:54 Heat of formation + Delta-G solvation = 3.832206 kcal Electronic energy + Delta-G solvation = -21529.110363 eV Core-core repulsion = 18343.950950 eV Total energy + Delta-G solvation = -3185.159414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69688 -38.69915 -36.36554 -34.67579 -33.31138 -32.31256 -31.62641 -29.79368 -28.66650 -26.24771 -24.31456 -24.07769 -23.48963 -21.40456 -20.38581 -20.07229 -17.87779 -17.16627 -16.71308 -15.79216 -15.36772 -15.22090 -14.99720 -14.49126 -14.04825 -13.88138 -13.57798 -13.26400 -13.24891 -12.90804 -12.72512 -12.22133 -12.06113 -12.00027 -11.91859 -11.38465 -11.30263 -10.92550 -10.81912 -10.72126 -10.33816 -9.99758 -9.86992 -9.78083 -9.67141 -9.21477 -9.01184 -8.92736 -8.50675 -6.99446 -5.76343 -3.06390 0.71601 1.20490 2.97652 3.43928 3.48498 3.49353 3.50297 3.96218 4.30608 4.58743 4.69737 4.74910 4.88829 4.97064 5.28231 5.42134 5.48058 5.52074 5.52594 5.55694 5.61743 5.81210 5.94030 5.97805 6.02388 6.06543 6.10792 6.21559 6.30635 6.39442 6.46176 6.58571 6.63453 6.78760 6.90294 7.07972 7.69730 7.74471 8.08685 8.40755 8.57931 9.52606 10.07580 10.43126 11.45635 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.005053 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.556118 B = 5540.124867 C = 6611.482007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.075 4.075 4 C -0.089 4.089 5 C -0.152 4.152 6 C 0.092 3.908 7 N -0.446 5.446 8 C 0.081 3.919 9 C 0.564 3.436 10 O -0.541 6.541 11 N -0.690 5.690 12 C 0.113 3.887 13 C 0.159 3.841 14 H 0.054 0.946 15 C -0.162 4.162 16 N -0.722 5.722 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.162 0.838 33 H 0.421 0.579 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.165 -9.593 -11.061 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 C -0.078 4.078 4 C -0.115 4.115 5 C -0.172 4.172 6 C -0.068 4.068 7 N -0.156 5.156 8 C -0.057 4.057 9 C 0.348 3.652 10 O -0.420 6.420 11 N -0.340 5.340 12 C -0.011 4.011 13 C 0.049 3.951 14 H 0.072 0.928 15 C -0.222 4.222 16 N -0.365 5.365 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.214 1.214 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.962 -9.791 -10.102 16.165 hybrid contribution -0.013 1.185 -0.709 1.381 sum 7.949 -8.605 -10.811 15.941 Atomic orbital electron populations 1.21622 0.94207 1.01751 1.01731 1.20757 0.96933 0.91028 1.03698 1.20952 0.96311 0.97947 0.92550 1.21506 0.96966 0.95127 0.97873 1.22343 0.99758 0.95311 0.99748 1.22815 0.96066 1.00215 0.87678 1.67631 1.07476 1.09452 1.31068 1.21113 0.99794 0.90677 0.94116 1.17858 0.78586 0.85804 0.82927 1.90677 1.50883 1.15620 1.84798 1.45912 1.63646 1.15514 1.08951 1.21759 0.99317 0.96235 0.83801 1.20509 0.95872 0.87608 0.91154 0.92845 1.22360 1.00501 0.99648 0.99722 1.42442 1.42165 1.03186 1.48689 1.19164 1.15274 0.85158 1.17680 0.91191 1.24731 0.98626 0.97946 0.99304 1.69665 1.24772 1.30079 1.33275 0.86288 0.77282 0.84265 0.78435 1.21246 1.21791 1.21352 0.91735 0.93794 0.92447 0.92105 0.87467 0.84477 0.84471 0.82130 0.74066 0.91614 0.91641 0.94205 0.92312 0.93216 0.78092 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.42 37.15 0.35 -1.41 16 2 C -0.09 -1.09 5.35 -27.89 -0.15 -1.24 16 3 C -0.07 -1.01 5.19 -104.09 -0.54 -1.55 16 4 C -0.09 -0.96 9.81 -39.31 -0.39 -1.34 16 5 C -0.15 -1.54 10.11 -39.32 -0.40 -1.94 16 6 C 0.09 1.17 11.18 -17.56 -0.20 0.97 16 7 N -0.45 -7.24 9.55 -9.80 -0.09 -7.33 16 8 C 0.08 1.33 6.74 -83.01 -0.56 0.77 16 9 C 0.56 10.06 7.38 -12.18 -0.09 9.97 16 10 O -0.54 -9.91 11.79 5.35 0.06 -9.85 16 11 N -0.69 -12.68 5.38 -61.15 -0.33 -13.01 16 12 C 0.11 2.00 5.23 -4.05 -0.02 1.98 16 13 C 0.16 3.08 3.05 -67.94 -0.21 2.87 16 14 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 15 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 16 N -0.72 -17.49 4.56 -53.43 -0.24 -17.74 16 17 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H 0.06 1.01 6.46 -51.93 -0.34 0.68 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.60 8.02 -51.93 -0.42 0.19 16 29 H 0.11 1.54 5.90 -51.93 -0.31 1.23 16 30 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.42 8.36 7.48 -40.82 -0.31 8.05 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -30.73 334.66 -7.82 -38.56 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.88 Total: 14.68 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.09 Total: -0.44 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 0.06 Total: -65.11 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.06 Total: -9.85 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.73 -7.82 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752882562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.392 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds