Wall clock time and date at job start Thu Apr 9 2020 13:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47074 * 2 1 4 4 C 1.38635 * 120.47053 * 258.20221 * 3 2 1 5 5 C 1.38583 * 118.49010 * 180.25536 * 4 3 2 6 6 C 1.38599 * 119.34778 * 359.43462 * 5 4 3 7 7 N 1.31496 * 120.90349 * 0.58273 * 6 5 4 8 8 C 1.32736 * 121.64169 * 359.71399 * 7 6 5 9 9 C 1.48176 * 119.72251 * 179.97438 * 8 7 6 10 10 O 1.21515 * 119.99673 * 185.29315 * 9 8 7 11 11 N 1.34772 * 119.99827 * 5.29588 * 9 8 7 12 12 C 1.46502 * 120.00156 * 179.97438 * 11 9 8 13 13 C 1.52990 * 109.47325 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.47303 * 294.99860 * 13 12 11 15 15 C 1.52998 * 109.47342 * 175.00141 * 13 12 11 16 16 N 1.46500 * 109.47285 * 55.00085 * 13 12 11 17 17 C 1.36934 * 120.00151 * 205.00080 * 16 13 12 18 18 H 1.07994 * 120.00044 * 359.97438 * 17 16 13 19 19 C 1.38816 * 120.00174 * 179.97438 * 17 16 13 20 20 N 1.31624 * 119.99442 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00339 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46902 * 60.00274 * 21 19 17 23 23 H 1.48500 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47148 * 300.00353 * 21 19 17 25 25 H 1.09004 * 109.47306 * 299.99956 * 1 2 3 26 26 H 1.09000 * 109.47750 * 60.00300 * 1 2 3 27 27 H 1.09001 * 109.47231 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47127 * 239.99528 * 2 1 3 29 29 H 1.09000 * 109.47016 * 119.99825 * 2 1 3 30 30 H 1.08004 * 120.75208 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.32388 * 179.70727 * 5 4 3 32 32 H 1.08001 * 119.54823 * 180.30066 * 6 5 4 33 33 H 0.97001 * 119.99784 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.46937 * 300.00037 * 12 11 9 35 35 H 1.09002 * 109.46736 * 59.99591 * 12 11 9 36 36 H 1.09001 * 109.46913 * 59.99915 * 15 13 12 37 37 H 1.09000 * 109.47427 * 180.02562 * 15 13 12 38 38 H 1.09004 * 109.46692 * 300.00093 * 15 13 12 39 39 H 0.96997 * 119.99674 * 24.99739 * 16 13 12 40 40 H 0.97007 * 119.99462 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.4969 2.0022 -1.1696 5 6 2.9543 3.3094 -1.1217 6 6 2.9233 3.9962 0.0818 7 7 2.4773 3.4205 1.1766 8 6 2.0359 2.1686 1.1749 9 6 1.5432 1.5616 2.4336 10 8 1.2285 0.3882 2.4597 11 7 1.4439 2.3110 3.5494 12 6 0.9562 1.7110 4.7937 13 6 0.9416 2.7691 5.8986 14 1 1.9626 3.0858 6.1120 15 6 0.3164 2.1773 7.1634 16 7 0.1541 3.9236 5.4589 17 6 0.3924 5.1600 5.9971 18 1 1.1605 5.2840 6.7460 19 6 -0.3535 6.2540 5.5800 20 7 -1.2900 6.1026 4.6676 21 14 -0.0290 7.9405 6.3147 22 1 1.3752 8.3380 6.0403 23 1 -0.9525 8.9315 5.7062 24 1 -0.2522 7.8925 7.7820 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 2.5065 1.4473 -2.0962 31 1 3.3272 3.7898 -2.0142 32 1 3.2744 5.0168 0.1218 33 1 1.6954 3.2476 3.5285 34 1 -0.0536 1.3298 4.6419 35 1 1.6139 0.8918 5.0842 36 1 0.9024 1.3184 7.4906 37 1 0.3056 2.9313 7.9505 38 1 -0.7045 1.8606 6.9500 39 1 -0.5360 3.8121 4.7865 40 1 -1.8115 6.8670 4.3765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752882562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:54 Heat of formation + Delta-G solvation = -16.904670 kcal Electronic energy + Delta-G solvation = -21530.009582 eV Core-core repulsion = 18343.950950 eV Total energy + Delta-G solvation = -3186.058632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79062 -39.96066 -37.95711 -35.86383 -34.87095 -33.70302 -32.99175 -30.89860 -30.45608 -27.58199 -25.84289 -25.18502 -25.00823 -22.41410 -21.71602 -21.58637 -19.46399 -18.81699 -17.81196 -17.00747 -16.73408 -16.56441 -16.34171 -15.92202 -15.63669 -15.11241 -14.87459 -14.77808 -14.31169 -14.11689 -13.83332 -13.69200 -13.64694 -13.36345 -13.07861 -12.97334 -12.73693 -12.50229 -12.32381 -12.23340 -12.00855 -11.69908 -11.65658 -10.98634 -10.91865 -10.77135 -10.31779 -10.14868 -9.81583 -9.01999 -7.90551 -5.19798 -0.30262 0.28263 1.49089 1.51506 1.57269 1.76865 2.21354 2.58440 2.88981 3.23639 3.43721 3.72332 3.85478 3.88303 3.96482 4.00722 4.06588 4.38616 4.41193 4.48000 4.54528 4.57632 4.62488 4.72524 4.81902 4.87769 5.03030 5.05980 5.10547 5.12513 5.24622 5.29326 5.44677 5.47924 5.55544 5.62947 5.72181 6.29412 6.49369 6.87904 7.20316 7.36435 8.08839 8.33470 9.32295 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.005053 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.556118 B = 5540.124867 C = 6611.482007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.081 4.081 4 C -0.084 4.084 5 C -0.130 4.130 6 C 0.074 3.926 7 N -0.485 5.485 8 C 0.044 3.956 9 C 0.558 3.442 10 O -0.553 6.553 11 N -0.699 5.699 12 C 0.122 3.878 13 C 0.158 3.842 14 H 0.055 0.945 15 C -0.152 4.152 16 N -0.731 5.731 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.970 3.030 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.280 1.280 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.180 0.820 33 H 0.412 0.588 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.371 0.629 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -9.966 -12.651 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.109 4.109 5 C -0.150 4.150 6 C -0.086 4.086 7 N -0.196 5.196 8 C -0.092 4.092 9 C 0.344 3.656 10 O -0.433 6.433 11 N -0.348 5.348 12 C -0.002 4.002 13 C 0.049 3.951 14 H 0.074 0.926 15 C -0.213 4.213 16 N -0.372 5.372 17 C -0.368 4.368 18 H 0.095 0.905 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.799 3.201 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.206 1.206 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.195 0.805 31 H 0.199 0.801 32 H 0.197 0.803 33 H 0.249 0.751 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.203 0.797 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.556 -10.214 -11.655 18.206 hybrid contribution -0.421 1.243 -0.287 1.343 sum 9.135 -8.971 -11.941 17.508 Atomic orbital electron populations 1.21578 0.94784 1.02116 1.00480 1.20717 0.96344 0.90748 1.04230 1.21180 0.96325 0.98206 0.92748 1.21988 0.95296 0.95529 0.98106 1.22802 0.97249 0.94842 1.00072 1.23336 0.95933 1.01300 0.88003 1.67518 1.08882 1.09870 1.33323 1.20962 1.02491 0.91579 0.94211 1.18286 0.78102 0.85734 0.83489 1.90655 1.51439 1.16018 1.85191 1.45957 1.64238 1.15106 1.09540 1.21658 0.99238 0.96001 0.83279 1.20697 0.95240 0.86701 0.92455 0.92650 1.22213 1.00640 1.00427 0.97975 1.42573 1.42286 1.03961 1.48406 1.19544 1.14349 0.86167 1.16706 0.90472 1.25491 0.99109 1.01484 1.00349 1.69834 1.26292 1.30505 1.35279 0.85265 0.77107 0.79950 0.77731 1.20368 1.22601 1.20631 0.95425 0.92481 0.91280 0.88626 0.89765 0.80482 0.80059 0.80315 0.75104 0.92673 0.89637 0.90607 0.93621 0.93778 0.79722 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.42 71.98 0.68 -2.67 16 2 C -0.08 -1.98 5.35 29.84 0.16 -1.82 16 3 C -0.08 -2.11 5.19 -19.52 -0.10 -2.21 16 4 C -0.08 -1.51 9.81 22.45 0.22 -1.28 16 5 C -0.13 -2.18 10.11 22.44 0.23 -1.95 16 6 C 0.07 1.78 11.18 84.83 0.95 2.73 16 7 N -0.48 -15.96 9.55 -184.91 -1.77 -17.73 16 8 C 0.04 1.47 6.74 41.90 0.28 1.75 16 9 C 0.56 20.75 7.38 86.89 0.64 21.39 16 10 O -0.55 -21.03 11.79 -3.76 -0.04 -21.07 16 11 N -0.70 -26.76 5.38 -465.67 -2.50 -29.27 16 12 C 0.12 4.39 5.23 86.38 0.45 4.84 16 13 C 0.16 6.13 3.05 44.99 0.14 6.27 16 14 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 15 C -0.15 -5.23 9.49 71.98 0.68 -4.55 16 16 N -0.73 -36.23 4.56 -322.96 -1.47 -37.71 16 17 C -0.24 -12.83 9.93 84.03 0.83 -12.00 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 20 N -0.97 -59.45 13.06 21.65 0.28 -59.16 16 21 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H 0.03 0.89 6.46 -2.38 -0.02 0.87 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.10 1.58 8.02 -2.39 -0.02 1.56 16 29 H 0.08 2.42 5.90 -2.39 -0.01 2.40 16 30 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.41 17.20 7.48 -92.71 -0.69 16.51 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 40 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -69.23 334.66 1.79 -67.44 By element: Atomic # 1 Polarization: 42.93 SS G_CDS: -0.36 Total: 42.56 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.63 Total: 6.86 kcal Atomic # 7 Polarization: -138.41 SS G_CDS: -5.46 Total: -143.87 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.04 Total: -21.07 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -69.23 1.79 -67.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752882562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.540 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds