Wall clock time and date at job start Thu Apr 9 2020 13:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47218 * 2 1 4 4 H 1.09006 * 109.47008 * 55.51129 * 3 2 1 5 5 C 1.50700 * 109.47243 * 175.50898 * 3 2 1 6 6 H 1.08002 * 119.99826 * 120.00010 * 5 3 2 7 7 C 1.37877 * 120.00303 * 300.00625 * 5 3 2 8 8 N 1.31511 * 120.00225 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99552 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47348 * 90.00648 * 9 7 5 11 11 H 1.48509 * 109.46917 * 210.00152 * 9 7 5 12 12 H 1.48492 * 109.47383 * 329.99860 * 9 7 5 13 13 N 1.46901 * 109.47384 * 295.51419 * 3 2 1 14 14 C 1.46898 * 110.99954 * 153.04725 * 13 3 2 15 15 C 1.53001 * 109.46794 * 185.09242 * 14 13 3 16 16 C 1.50702 * 109.47068 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99899 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99787 * 180.02562 * 16 15 14 19 19 C 1.39962 * 119.99660 * 175.10477 * 18 16 15 20 20 C 1.39273 * 120.48702 * 326.94625 * 19 18 16 21 21 C 1.38506 * 118.36178 * 179.76026 * 20 19 18 22 22 C 1.38278 * 119.23167 * 0.53983 * 21 20 19 23 23 N 1.31853 * 120.91673 * 359.70068 * 22 21 20 24 24 C 1.31813 * 121.79971 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47040 * 185.06646 * 1 2 3 26 26 H 1.08999 * 109.47068 * 305.07063 * 1 2 3 27 27 H 1.09003 * 109.47018 * 65.06872 * 1 2 3 28 28 H 1.09008 * 109.47177 * 240.00338 * 2 1 3 29 29 H 1.08994 * 109.47279 * 120.00204 * 2 1 3 30 30 H 0.97000 * 119.99806 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99663 * 277.00089 * 13 3 2 32 32 H 1.09001 * 109.47031 * 305.09265 * 14 13 3 33 33 H 1.08993 * 109.47208 * 65.09685 * 14 13 3 34 34 H 1.09003 * 109.47488 * 300.00359 * 15 14 13 35 35 H 1.09006 * 109.47094 * 60.00387 * 15 14 13 36 36 H 0.96998 * 120.00728 * 355.10170 * 18 16 15 37 37 H 1.08002 * 120.82105 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.38760 * 180.26064 * 21 20 19 39 39 H 1.07995 * 119.53656 * 179.72043 * 22 21 20 40 40 H 1.08001 * 119.67095 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6125 1.9791 0.8471 5 6 3.5429 1.4440 0.1113 6 1 4.1417 1.8909 -0.6686 7 6 4.1536 0.8747 1.2085 8 7 5.4651 0.8756 1.3054 9 14 3.1179 0.1023 2.5577 10 1 2.8935 -1.3328 2.2491 11 1 3.8266 0.2243 3.8570 12 1 1.8104 0.8014 2.6396 13 7 1.6409 2.1031 -1.2499 14 6 1.5186 3.5549 -1.0623 15 6 0.9806 4.1914 -2.3454 16 6 0.8558 5.6809 -2.1532 17 8 1.1661 6.1838 -1.0940 18 7 0.3984 6.4540 -3.1579 19 6 0.1853 7.8212 -2.9476 20 6 -0.2322 8.2880 -1.7036 21 6 -0.4248 9.6502 -1.5428 22 6 -0.2092 10.4941 -2.6168 23 7 0.1811 10.0196 -3.7834 24 6 0.3812 8.7313 -3.9776 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3633 0.5905 0.8411 27 1 -0.3633 0.4332 -0.9319 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.8947 0.4754 2.0776 31 1 2.2866 1.8878 -1.9948 32 1 0.8323 3.7585 -0.2403 33 1 2.4974 3.9751 -0.8311 34 1 1.6669 3.9877 -3.1675 35 1 0.0018 3.7712 -2.5767 36 1 0.2169 6.0629 -4.0269 37 1 -0.3974 7.6052 -0.8832 38 1 -0.7441 10.0481 -0.5909 39 1 -0.3623 11.5565 -2.4981 40 1 0.7004 8.3801 -4.9478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565723644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:35 Heat of formation + Delta-G solvation = -1.206519 kcal Electronic energy + Delta-G solvation = -20742.736777 eV Core-core repulsion = 17557.358868 eV Total energy + Delta-G solvation = -3185.377909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96680 -39.34349 -36.62372 -35.25122 -33.31415 -32.33865 -31.90833 -30.63391 -29.14979 -26.66201 -24.25146 -23.73337 -22.64833 -21.81394 -20.42386 -19.87629 -18.08206 -17.22681 -17.09629 -16.93452 -16.21530 -15.49824 -15.13759 -14.54937 -14.26842 -14.13752 -13.90859 -13.60450 -13.39816 -13.09028 -12.85394 -12.50274 -12.33954 -11.83985 -11.68813 -11.49706 -11.18571 -11.10000 -10.84046 -10.54745 -10.32718 -10.23028 -9.90738 -9.79625 -9.53132 -9.44768 -9.22882 -8.59291 -8.53176 -7.44669 -6.13954 -4.15198 0.81125 1.07498 2.49180 2.77296 3.25123 3.36237 3.38530 3.62396 4.25160 4.36179 4.49673 4.63973 4.75984 4.88862 5.04669 5.12953 5.20179 5.27728 5.36191 5.61455 5.77011 5.81898 5.95875 6.00530 6.02470 6.03399 6.23636 6.32054 6.53841 6.60450 6.67887 6.71812 6.93176 7.06731 7.09493 7.24133 7.53370 7.71209 7.91961 7.99349 8.32091 8.45054 8.87605 9.49214 10.99053 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.003241 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.938004 B = 8636.273850 C = 8920.671884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.185 3.815 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.682 5.682 14 C 0.079 3.921 15 C -0.134 4.134 16 C 0.515 3.485 17 O -0.513 6.513 18 N -0.676 5.676 19 C 0.105 3.895 20 C -0.082 4.082 21 C -0.150 4.150 22 C 0.073 3.927 23 N -0.467 5.467 24 C 0.071 3.929 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.334 0.666 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.414 0.586 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 12.117 -9.940 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.312 5.312 14 C -0.052 4.052 15 C -0.174 4.174 16 C 0.304 3.696 17 O -0.386 6.386 18 N -0.322 5.322 19 C 0.008 3.992 20 C -0.110 4.110 21 C -0.170 4.170 22 C -0.084 4.084 23 N -0.176 5.176 24 C -0.089 4.089 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.250 0.750 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.173 0.827 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.063 12.800 -9.621 21.312 hybrid contribution 0.460 -1.022 1.139 1.598 sum -13.604 11.778 -8.482 19.893 Atomic orbital electron populations 1.21718 0.97566 0.99137 1.01480 1.21823 0.93817 0.99304 1.00440 1.19565 0.94315 0.90524 0.88014 0.94973 1.21718 0.90393 1.38994 1.07473 0.90976 1.25007 0.94780 0.95301 0.97929 1.69913 1.08611 1.44885 1.30086 0.86805 0.80550 0.79801 0.80800 1.20427 1.22565 1.18932 1.60748 1.54356 1.06581 1.09477 1.21508 1.00271 0.89289 0.94127 1.21686 1.04554 0.88828 1.02339 1.21256 0.75163 0.90020 0.83195 1.90744 1.46400 1.75147 1.26303 1.43663 1.66274 1.06149 1.16153 1.18876 0.99236 0.84910 0.96216 1.21693 0.95646 0.96409 0.97228 1.22105 1.00769 0.93541 1.00635 1.22696 0.97085 1.00479 0.88188 1.67616 1.11126 1.14433 1.24393 1.22582 0.99353 0.88049 0.98935 0.94886 0.94154 0.92109 0.92343 0.93721 0.92601 0.84992 0.91307 0.93949 0.88701 0.87931 0.74983 0.83569 0.84432 0.82666 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.73 37.16 0.36 -2.16 16 2 C -0.12 -2.47 5.11 -26.73 -0.14 -2.61 16 3 C 0.18 4.23 1.58 -68.86 -0.11 4.13 16 4 H 0.03 0.79 6.74 -51.93 -0.35 0.44 16 5 C -0.55 -15.01 9.09 -34.44 -0.31 -15.32 16 6 H 0.07 2.14 7.96 -52.49 -0.42 1.72 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 9 Si 0.89 22.05 24.41 -169.99 -4.15 17.91 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.28 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.68 -12.83 5.75 -107.95 -0.62 -13.45 16 14 C 0.08 1.37 4.81 -3.82 -0.02 1.35 16 15 C -0.13 -1.61 6.00 -27.88 -0.17 -1.77 16 16 C 0.52 6.65 7.60 -10.99 -0.08 6.56 16 17 O -0.51 -8.77 13.68 5.55 0.08 -8.70 16 18 N -0.68 -6.48 5.35 -9.76 -0.05 -6.53 16 19 C 0.10 1.15 6.31 -83.54 -0.53 0.62 16 20 C -0.08 -0.95 8.77 -39.10 -0.34 -1.30 16 21 C -0.15 -1.45 10.11 -39.47 -0.40 -1.85 16 22 C 0.07 0.70 11.18 -17.53 -0.20 0.51 16 23 N -0.47 -5.21 10.35 -13.09 -0.14 -5.35 16 24 C 0.07 0.72 11.12 -17.33 -0.19 0.52 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 28 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.04 1.02 3.22 -51.93 -0.17 0.86 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.33 6.18 8.43 -39.29 -0.33 5.84 16 32 H 0.07 1.27 7.88 -51.93 -0.41 0.86 16 33 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.41 2.42 8.82 -40.82 -0.36 2.06 16 37 H 0.15 1.88 6.49 -52.49 -0.34 1.54 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -33.37 329.53 -7.13 -40.50 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.77 Total: 6.60 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.22 Total: -9.34 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.03 Total: -51.95 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.37 -7.13 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565723644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.297 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds