Wall clock time and date at job start Thu Apr 9 2020 13:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47218 * 2 1 4 4 H 1.09006 * 109.47008 * 55.51129 * 3 2 1 5 5 C 1.50700 * 109.47243 * 175.50898 * 3 2 1 6 6 H 1.08002 * 119.99826 * 120.00010 * 5 3 2 7 7 C 1.37877 * 120.00303 * 300.00625 * 5 3 2 8 8 N 1.31511 * 120.00225 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99552 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47348 * 90.00648 * 9 7 5 11 11 H 1.48509 * 109.46917 * 210.00152 * 9 7 5 12 12 H 1.48492 * 109.47383 * 329.99860 * 9 7 5 13 13 N 1.46901 * 109.47384 * 295.51419 * 3 2 1 14 14 C 1.46898 * 110.99954 * 153.04725 * 13 3 2 15 15 C 1.53001 * 109.46794 * 185.09242 * 14 13 3 16 16 C 1.50702 * 109.47068 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99899 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99787 * 180.02562 * 16 15 14 19 19 C 1.39962 * 119.99660 * 175.10477 * 18 16 15 20 20 C 1.39273 * 120.48702 * 326.94625 * 19 18 16 21 21 C 1.38506 * 118.36178 * 179.76026 * 20 19 18 22 22 C 1.38278 * 119.23167 * 0.53983 * 21 20 19 23 23 N 1.31853 * 120.91673 * 359.70068 * 22 21 20 24 24 C 1.31813 * 121.79971 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47040 * 185.06646 * 1 2 3 26 26 H 1.08999 * 109.47068 * 305.07063 * 1 2 3 27 27 H 1.09003 * 109.47018 * 65.06872 * 1 2 3 28 28 H 1.09008 * 109.47177 * 240.00338 * 2 1 3 29 29 H 1.08994 * 109.47279 * 120.00204 * 2 1 3 30 30 H 0.97000 * 119.99806 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99663 * 277.00089 * 13 3 2 32 32 H 1.09001 * 109.47031 * 305.09265 * 14 13 3 33 33 H 1.08993 * 109.47208 * 65.09685 * 14 13 3 34 34 H 1.09003 * 109.47488 * 300.00359 * 15 14 13 35 35 H 1.09006 * 109.47094 * 60.00387 * 15 14 13 36 36 H 0.96998 * 120.00728 * 355.10170 * 18 16 15 37 37 H 1.08002 * 120.82105 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.38760 * 180.26064 * 21 20 19 39 39 H 1.07995 * 119.53656 * 179.72043 * 22 21 20 40 40 H 1.08001 * 119.67095 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6125 1.9791 0.8471 5 6 3.5429 1.4440 0.1113 6 1 4.1417 1.8909 -0.6686 7 6 4.1536 0.8747 1.2085 8 7 5.4651 0.8756 1.3054 9 14 3.1179 0.1023 2.5577 10 1 2.8935 -1.3328 2.2491 11 1 3.8266 0.2243 3.8570 12 1 1.8104 0.8014 2.6396 13 7 1.6409 2.1031 -1.2499 14 6 1.5186 3.5549 -1.0623 15 6 0.9806 4.1914 -2.3454 16 6 0.8558 5.6809 -2.1532 17 8 1.1661 6.1838 -1.0940 18 7 0.3984 6.4540 -3.1579 19 6 0.1853 7.8212 -2.9476 20 6 -0.2322 8.2880 -1.7036 21 6 -0.4248 9.6502 -1.5428 22 6 -0.2092 10.4941 -2.6168 23 7 0.1811 10.0196 -3.7834 24 6 0.3812 8.7313 -3.9776 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3633 0.5905 0.8411 27 1 -0.3633 0.4332 -0.9319 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.8947 0.4754 2.0776 31 1 2.2866 1.8878 -1.9948 32 1 0.8323 3.7585 -0.2403 33 1 2.4974 3.9751 -0.8311 34 1 1.6669 3.9877 -3.1675 35 1 0.0018 3.7712 -2.5767 36 1 0.2169 6.0629 -4.0269 37 1 -0.3974 7.6052 -0.8832 38 1 -0.7441 10.0481 -0.5909 39 1 -0.3623 11.5565 -2.4981 40 1 0.7004 8.3801 -4.9478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565723644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:34 Heat of formation + Delta-G solvation = -26.930606 kcal Electronic energy + Delta-G solvation = -20743.852257 eV Core-core repulsion = 17557.358868 eV Total energy + Delta-G solvation = -3186.493389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85097 -40.28419 -38.29378 -36.20834 -34.91786 -33.87911 -33.13364 -31.69060 -30.34169 -28.43723 -25.31517 -24.68918 -24.16303 -23.06323 -21.78955 -21.30228 -19.14286 -18.93088 -18.15446 -17.82365 -17.26989 -16.93247 -16.55911 -15.81852 -15.55734 -15.26115 -15.01973 -14.95287 -14.72653 -14.56822 -14.05805 -14.02053 -13.51828 -13.33590 -13.10004 -12.94212 -12.78939 -12.50582 -12.08975 -12.07264 -12.00799 -11.58584 -11.31672 -11.28184 -11.17348 -10.72449 -10.69945 -10.36902 -9.35306 -9.14999 -8.35893 -6.40806 0.02350 0.25432 1.27496 1.33481 1.43604 1.51373 1.89540 2.27785 2.84732 3.00010 3.41497 3.61420 3.76963 3.86090 3.97041 4.08873 4.14942 4.29901 4.41923 4.43930 4.48089 4.67226 4.71194 4.71861 4.91826 4.98835 5.03049 5.09328 5.17124 5.18454 5.24265 5.33170 5.45994 5.49505 5.65671 5.76525 6.03434 6.29805 6.36433 6.59821 6.78670 6.94187 7.05726 7.28169 8.80547 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.003241 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.938004 B = 8636.273850 C = 8920.671884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.189 3.811 4 H 0.018 0.982 5 C -0.547 4.547 6 H 0.034 0.966 7 C 0.014 3.986 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.260 1.260 11 H -0.302 1.302 12 H -0.250 1.250 13 N -0.662 5.662 14 C 0.081 3.919 15 C -0.118 4.118 16 C 0.516 3.484 17 O -0.564 6.564 18 N -0.654 5.654 19 C 0.089 3.911 20 C -0.103 4.103 21 C -0.151 4.151 22 C 0.072 3.928 23 N -0.488 5.488 24 C 0.073 3.927 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.337 0.663 32 H 0.055 0.945 33 H 0.000 1.000 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.434 0.566 37 H 0.128 0.872 38 H 0.159 0.841 39 H 0.184 0.816 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 12.066 -11.236 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.079 3.921 4 H 0.036 0.964 5 C -0.586 4.586 6 H 0.053 0.947 7 C -0.185 4.185 8 N -0.587 5.587 9 Si 0.778 3.222 10 H -0.186 1.186 11 H -0.230 1.230 12 H -0.174 1.174 13 N -0.291 5.291 14 C -0.049 4.049 15 C -0.158 4.158 16 C 0.306 3.694 17 O -0.441 6.441 18 N -0.302 5.302 19 C -0.008 4.008 20 C -0.132 4.132 21 C -0.171 4.171 22 C -0.085 4.085 23 N -0.196 5.196 24 C -0.087 4.087 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.019 0.981 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.274 0.726 37 H 0.146 0.854 38 H 0.177 0.823 39 H 0.201 0.799 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.649 12.755 -10.989 23.678 hybrid contribution 1.288 -0.876 1.461 2.136 sum -15.361 11.879 -9.528 21.630 Atomic orbital electron populations 1.21639 0.94349 1.00856 1.02206 1.21743 0.96645 0.97174 0.99855 1.19439 0.91022 0.92317 0.89366 0.96422 1.22094 0.92910 1.37433 1.06161 0.94731 1.25878 0.95789 0.96189 1.00601 1.70061 1.10599 1.46843 1.31206 0.85821 0.79266 0.79818 0.77340 1.18629 1.22998 1.17427 1.60759 1.53459 1.07151 1.07682 1.21443 0.98081 0.88443 0.96956 1.21526 1.06497 0.87921 0.99810 1.21354 0.74632 0.90471 0.82979 1.90737 1.48933 1.75954 1.28473 1.43371 1.64910 1.05622 1.16302 1.19004 1.00029 0.85415 0.96391 1.21766 0.96855 0.97258 0.97275 1.22362 1.00204 0.92777 1.01801 1.23193 0.95847 1.01850 0.87590 1.67688 1.11854 1.14904 1.25183 1.22968 0.98395 0.87636 0.99658 0.92506 0.94342 0.90686 0.92124 0.95171 0.92574 0.84576 0.92629 0.98125 0.86190 0.84729 0.72612 0.85394 0.82300 0.79861 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 9.73 71.98 0.70 -3.58 16 2 C -0.12 -4.72 5.11 30.60 0.16 -4.57 16 3 C 0.19 8.58 1.58 44.17 0.07 8.65 16 4 H 0.02 0.87 6.74 -2.38 -0.02 0.85 16 5 C -0.55 -30.86 9.09 25.60 0.23 -30.63 16 6 H 0.03 2.15 7.96 -2.91 -0.02 2.13 16 7 C 0.01 0.79 5.45 84.66 0.46 1.25 16 8 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 9 Si 0.95 45.71 24.41 68.60 1.67 47.38 16 10 H -0.26 -11.75 6.83 99.48 0.68 -11.07 16 11 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 12 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 13 N -0.66 -24.32 5.75 -495.44 -2.85 -27.17 16 14 C 0.08 2.84 4.81 86.30 0.41 3.25 16 15 C -0.12 -2.60 6.00 29.85 0.18 -2.42 16 16 C 0.52 12.93 7.60 87.66 0.67 13.60 16 17 O -0.56 -19.86 13.68 -3.05 -0.04 -19.90 16 18 N -0.65 -11.45 5.35 -303.20 -1.62 -13.07 16 19 C 0.09 1.84 6.31 38.24 0.24 2.08 16 20 C -0.10 -2.40 8.77 22.58 0.20 -2.20 16 21 C -0.15 -2.78 10.11 22.34 0.23 -2.55 16 22 C 0.07 1.26 11.18 84.70 0.95 2.20 16 23 N -0.49 -10.00 10.35 -195.33 -2.02 -12.02 16 24 C 0.07 1.34 11.12 84.84 0.94 2.28 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 2.19 7.88 -2.39 -0.02 2.17 16 28 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.03 1.31 3.22 -2.39 -0.01 1.31 16 30 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.34 12.23 8.43 -89.69 -0.76 11.47 16 32 H 0.06 2.08 7.88 -2.39 -0.02 2.06 16 33 H 0.00 0.01 8.10 -2.39 -0.02 -0.01 16 34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.43 3.82 8.82 -92.71 -0.82 3.00 16 37 H 0.13 3.43 6.49 -2.91 -0.02 3.41 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -75.84 329.53 0.28 -75.57 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.60 Total: 21.31 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 5.44 Total: -12.62 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -6.19 Total: -111.74 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.04 Total: -19.90 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.67 Total: 47.38 kcal Total: -75.84 0.28 -75.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565723644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.635 kcal (2) G-P(sol) polarization free energy of solvation -75.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds