Wall clock time and date at job start Thu Apr 9 2020 13:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.47211 * 109.47138 * 2 1 4 4 N 2.60803 * 109.46947 * 359.97438 * 2 1 3 5 5 N 1.46494 * 109.47535 * 120.00150 * 2 1 3 6 6 C 1.34783 * 119.99874 * 300.00242 * 5 2 1 7 7 O 1.21285 * 119.99910 * 359.97438 * 6 5 2 8 8 C 1.50697 * 119.99925 * 179.97438 * 6 5 2 9 9 N 1.46500 * 109.47181 * 179.97438 * 8 6 5 10 10 C 1.36942 * 120.00061 * 270.00389 * 9 8 6 11 11 H 1.08002 * 119.99575 * 192.55198 * 10 9 8 12 12 C 1.38804 * 119.99939 * 12.54836 * 10 9 8 13 13 N 1.31626 * 120.00165 * 25.36412 * 12 10 9 14 14 Si 1.86803 * 120.00177 * 205.35592 * 12 10 9 15 15 H 1.48501 * 109.46905 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46906 * 120.00183 * 14 12 10 17 17 H 1.48494 * 109.47215 * 240.00771 * 14 12 10 18 18 C 1.46499 * 119.99877 * 89.99732 * 9 8 6 19 19 C 1.53007 * 117.50098 * 194.08436 * 18 9 8 20 20 C 1.52998 * 60.00006 * 252.50990 * 19 18 9 21 21 C 1.52999 * 109.47463 * 240.00402 * 2 1 3 22 22 C 1.52991 * 117.50364 * 123.74216 * 21 2 1 23 23 C 1.53000 * 117.49948 * 55.08062 * 21 2 1 24 24 H 1.08999 * 109.46986 * 300.00102 * 1 2 3 25 25 H 1.08994 * 109.46944 * 59.99697 * 1 2 3 26 26 H 1.08995 * 109.46839 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00669 * 119.99869 * 5 2 1 28 28 H 1.08997 * 109.47245 * 59.99884 * 8 6 5 29 29 H 1.08998 * 109.47094 * 299.99485 * 8 6 5 30 30 H 0.96989 * 119.99895 * 175.13151 * 13 12 10 31 31 H 1.08996 * 115.55512 * 339.79251 * 18 9 8 32 32 H 1.09004 * 117.49594 * 0.02562 * 19 18 9 33 33 H 1.09000 * 117.50115 * 145.02270 * 19 18 9 34 34 H 1.09000 * 117.50141 * 252.50550 * 20 19 18 35 35 H 1.09002 * 117.51725 * 107.47674 * 20 19 18 36 36 H 1.08997 * 115.55034 * 269.41798 * 21 2 1 37 37 H 1.09006 * 117.50346 * 0.02562 * 22 21 2 38 38 H 1.09004 * 117.50280 * 145.02076 * 22 21 2 39 39 H 1.08998 * 117.50343 * 214.98416 * 23 21 2 40 40 H 1.09004 * 117.49923 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 7 2.0184 -0.6906 1.1961 6 6 1.6928 -0.2302 2.4203 7 8 0.9958 0.7562 2.5316 8 6 2.1948 -0.9409 3.6506 9 7 1.7070 -0.2499 4.8469 10 6 2.4478 0.7571 5.4058 11 1 2.1995 1.1281 6.3892 12 6 3.5178 1.3008 4.7085 13 7 3.5417 1.2475 3.3936 14 14 4.9238 2.1083 5.6362 15 1 4.6588 2.0379 7.0957 16 1 6.1916 1.3988 5.3289 17 1 5.0387 3.5295 5.2216 18 6 0.4267 -0.6362 5.4450 19 6 -0.1882 0.3151 6.4737 20 6 0.4244 -1.0111 6.9284 21 6 2.0401 -0.7211 -1.2493 22 6 2.9863 0.0487 -2.1726 23 6 1.5432 -0.2199 -2.6067 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 2.5761 -1.4792 1.1071 28 1 3.2847 -0.9413 3.6508 29 1 1.8310 -1.9684 3.6505 30 1 4.2528 1.6886 2.9032 31 1 -0.2550 -1.1767 4.7884 32 1 0.3598 1.2285 6.7050 33 1 -1.2746 0.4007 6.4937 34 1 -0.2589 -1.7980 7.2477 35 1 1.3757 -0.9707 7.4591 36 1 2.2062 -1.7927 -1.1386 37 1 3.2458 1.0690 -1.8900 38 1 3.7748 -0.5163 -2.6698 39 1 1.3829 -0.9615 -3.3892 40 1 0.8532 0.6240 -2.6098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573035432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:53 Heat of formation + Delta-G solvation = 89.060739 kcal Electronic energy + Delta-G solvation = -22404.032054 eV Core-core repulsion = 19222.568427 eV Total energy + Delta-G solvation = -3181.463627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.60263 -37.75878 -36.59556 -35.11144 -33.70258 -33.19413 -30.65869 -29.88362 -26.55904 -24.71504 -23.56532 -22.36395 -21.57003 -21.41034 -20.01750 -19.41281 -17.33521 -16.50296 -16.18906 -15.71945 -15.42452 -14.40570 -14.30903 -14.11896 -13.85519 -13.33620 -12.97863 -12.69908 -12.56882 -12.29869 -12.17603 -11.78850 -11.67823 -11.46736 -11.26461 -11.14185 -10.99641 -10.79924 -10.68273 -10.50427 -10.45421 -10.30480 -10.16644 -9.94431 -9.78459 -9.37822 -8.53661 -8.32264 -8.28927 -6.78773 -5.84341 -3.09983 3.20531 3.37063 3.45975 3.46374 3.48799 3.70034 4.09229 4.17390 4.44959 4.55318 4.71809 4.86400 4.89894 4.95516 5.19064 5.32118 5.42301 5.55582 5.57585 5.78480 5.85649 5.86163 6.01354 6.05492 6.05672 6.08470 6.16087 6.25297 6.45817 6.53186 6.57259 6.64421 6.91011 7.03241 7.10541 7.26681 7.81609 8.22311 8.29449 8.52950 9.12194 9.64760 9.83200 10.22175 11.24256 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.006475 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.116168 B = 4323.467666 C = 5299.847404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.313 3.687 3 C 0.218 3.782 4 N -0.426 5.426 5 N -0.739 5.739 6 C 0.529 3.471 7 O -0.510 6.510 8 C 0.169 3.831 9 N -0.536 5.536 10 C -0.255 4.255 11 H 0.080 0.920 12 C 0.005 3.995 13 N -0.887 5.887 14 Si 0.902 3.098 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.294 1.294 18 C 0.132 3.868 19 C -0.201 4.201 20 C -0.223 4.223 21 C -0.153 4.153 22 C -0.180 4.180 23 C -0.168 4.168 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.394 0.606 28 H 0.098 0.902 29 H 0.044 0.956 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 -10.428 -8.934 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.221 3.779 3 C -0.102 4.102 4 N -0.102 5.102 5 N -0.396 5.396 6 C 0.316 3.684 7 O -0.381 6.381 8 C 0.038 3.962 9 N -0.251 5.251 10 C -0.384 4.384 11 H 0.098 0.902 12 C -0.194 4.194 13 N -0.531 5.531 14 Si 0.733 3.267 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.221 1.221 18 C 0.022 3.978 19 C -0.240 4.240 20 C -0.264 4.264 21 C -0.172 4.172 22 C -0.217 4.217 23 C -0.205 4.205 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.227 0.773 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.879 -8.027 -8.885 12.586 hybrid contribution 1.035 0.062 0.368 1.100 sum -2.844 -7.965 -8.517 12.003 Atomic orbital electron populations 1.22188 0.92181 1.03180 1.03935 1.16826 0.94092 0.80867 0.86082 1.29066 0.93384 0.94850 0.92864 1.81025 1.08385 1.12719 1.08054 1.46500 1.56757 1.32195 1.04186 1.22141 0.78019 0.84952 0.83337 1.90525 1.37748 1.24411 1.85375 1.20584 1.00535 0.91335 0.83747 1.43519 1.17049 1.38121 1.26388 1.19148 1.06194 1.13897 0.99130 0.90205 1.24748 1.00096 0.99419 0.95129 1.69749 1.32951 1.45963 1.04436 0.86200 0.82694 0.78432 0.79377 1.20373 1.21613 1.22096 1.20893 0.88981 0.99852 0.88046 1.23108 0.98319 0.94997 1.07564 1.23405 1.01958 0.97907 1.03100 1.22412 1.05320 0.99757 0.89727 1.23181 0.93487 1.01943 1.03138 1.22994 0.97476 1.03507 0.96527 0.89421 0.92103 0.91046 0.77257 0.88446 0.93780 0.93534 0.89225 0.88592 0.90716 0.90723 0.89367 0.85696 0.88569 0.88294 0.88105 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.14 37.16 0.30 -1.94 16 2 C 0.31 4.85 0.86 -134.60 -0.12 4.74 16 3 C 0.22 4.39 10.47 -20.76 -0.22 4.17 16 4 N -0.43 -9.81 18.32 42.15 0.77 -9.04 16 5 N -0.74 -12.30 5.08 -50.22 -0.26 -12.56 16 6 C 0.53 11.36 5.20 -10.98 -0.06 11.31 16 7 O -0.51 -13.21 13.07 5.55 0.07 -13.13 16 8 C 0.17 3.61 5.48 -5.19 -0.03 3.58 16 9 N -0.54 -12.82 2.38 -167.02 -0.40 -13.22 16 10 C -0.25 -6.81 8.90 -15.06 -0.13 -6.95 16 11 H 0.08 2.16 6.27 -52.49 -0.33 1.83 16 12 C 0.00 0.13 4.83 -17.43 -0.08 0.05 16 13 N -0.89 -24.71 8.86 55.49 0.49 -24.22 16 14 Si 0.90 22.13 29.63 -169.99 -5.04 17.09 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 18 C 0.13 2.76 6.60 -67.93 -0.45 2.31 16 19 C -0.20 -4.02 9.77 -26.73 -0.26 -4.28 16 20 C -0.22 -4.12 10.13 -26.73 -0.27 -4.39 16 21 C -0.15 -1.71 5.33 -90.62 -0.48 -2.20 16 22 C -0.18 -2.09 9.67 -26.70 -0.26 -2.35 16 23 C -0.17 -1.64 9.55 -26.70 -0.26 -1.89 16 24 H 0.09 1.60 6.17 -51.93 -0.32 1.28 16 25 H 0.06 0.76 7.00 -51.93 -0.36 0.40 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.39 5.23 8.40 -40.82 -0.34 4.89 16 28 H 0.10 2.24 6.61 -51.93 -0.34 1.90 16 29 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.25 7.28 8.32 -40.82 -0.34 6.94 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.10 2.14 6.44 -51.93 -0.33 1.81 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.13 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.10 1.41 6.34 -51.93 -0.33 1.08 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.00 7.30 -51.93 -0.38 0.63 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -33.36 329.54 -7.37 -40.73 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.67 Total: 7.23 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.31 Total: 2.15 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.61 Total: -59.04 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.07 Total: -13.13 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.04 Total: 17.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.36 -7.37 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573035432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.788 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds